Wall clock time and date at job start Mon Mar 30 2020 04:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.31887 * 2 1 4 4 C 1.53228 * 109.32186 * 240.55566 * 2 1 3 5 5 C 1.51450 * 108.38309 * 156.99007 * 4 2 1 6 6 O 1.21278 * 120.10025 * 249.52208 * 5 4 2 7 7 N 1.33818 * 119.80118 * 69.50506 * 5 4 2 8 8 C 1.46500 * 120.01246 * 180.24930 * 7 5 4 9 9 C 1.53003 * 109.46932 * 264.52479 * 8 7 5 10 10 C 1.50703 * 115.55069 * 278.20477 * 9 8 7 11 11 H 1.07999 * 120.00019 * 145.42527 * 10 9 8 12 12 C 1.37876 * 119.99637 * 325.42363 * 10 9 8 13 13 N 1.31515 * 120.00503 * 341.38167 * 12 10 9 14 14 Si 1.86800 * 119.99423 * 161.37888 * 12 10 9 15 15 H 1.48496 * 109.47690 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46869 * 120.00145 * 14 12 10 17 17 H 1.48500 * 109.47299 * 239.99534 * 14 12 10 18 18 C 1.53002 * 117.49813 * 132.49648 * 9 8 7 19 19 C 1.52997 * 60.00123 * 252.50977 * 18 9 8 20 20 C 1.47208 * 119.97699 * 0.22740 * 7 5 4 21 21 C 1.53140 * 108.57237 * 289.86770 * 20 7 5 22 22 H 1.09008 * 109.21948 * 324.09568 * 21 20 7 23 23 C 1.53001 * 109.25695 * 204.64099 * 21 20 7 24 24 O 1.41709 * 110.57146 * 84.35401 * 21 20 7 25 25 H 1.08994 * 109.47742 * 300.36647 * 1 2 3 26 26 H 1.09005 * 109.46935 * 60.37302 * 1 2 3 27 27 H 1.09004 * 109.46782 * 180.36092 * 1 2 3 28 28 H 1.09003 * 109.67745 * 276.70857 * 4 2 1 29 29 H 1.08995 * 109.68221 * 37.26354 * 4 2 1 30 30 H 1.09004 * 109.47334 * 24.52249 * 8 7 5 31 31 H 1.08994 * 109.47323 * 144.52668 * 8 7 5 32 32 H 0.96995 * 120.00267 * 185.01592 * 13 12 10 33 33 H 1.09002 * 117.49533 * 0.02562 * 18 9 8 34 34 H 1.08998 * 117.49735 * 145.01929 * 18 9 8 35 35 H 1.08998 * 117.49887 * 252.51413 * 19 18 9 36 36 H 1.09002 * 117.51701 * 107.47761 * 19 18 9 37 37 H 1.09004 * 109.62238 * 170.14505 * 20 7 5 38 38 H 1.08994 * 109.77608 * 49.67837 * 20 7 5 39 39 H 1.08992 * 109.46735 * 298.91090 * 23 21 20 40 40 H 1.08996 * 109.46960 * 58.91650 * 23 21 20 41 41 H 1.09001 * 109.46841 * 178.91187 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8906 1.0287 0.0000 4 6 2.0369 -0.7108 -1.2592 5 6 3.4433 -0.2280 -1.5467 6 8 3.6603 0.4730 -2.5123 7 7 4.4459 -0.5768 -0.7319 8 6 5.8071 -0.1079 -1.0025 9 6 6.5695 -1.1794 -1.7846 10 6 7.1546 -2.2950 -0.9575 11 1 7.1979 -3.2976 -1.3566 12 6 7.6346 -2.0357 0.3087 13 7 7.9254 -0.8027 0.6621 14 14 7.8717 -3.4357 1.5225 15 1 7.4750 -4.7166 0.8845 16 1 9.2994 -3.5052 1.9252 17 1 7.0300 -3.1983 2.7226 18 6 7.3527 -0.7294 -3.0196 19 6 6.0592 -1.5300 -3.1838 20 6 4.1803 -1.4316 0.4369 21 6 3.3833 -0.6210 1.4629 22 1 3.7247 0.4141 1.4460 23 6 3.6145 -1.2058 2.8577 24 8 1.9989 -0.6614 1.1627 25 1 -0.3634 0.5195 0.8866 26 1 -0.3633 0.5081 -0.8934 27 1 -0.3633 -1.0277 0.0065 28 1 2.0452 -1.7883 -1.0943 29 1 1.3876 -0.4728 -2.1017 30 1 5.7654 0.8097 -1.5895 31 1 6.3186 0.0867 -0.0599 32 1 8.3309 -0.6285 1.5258 33 1 7.3250 0.3300 -3.2747 34 1 8.2914 -1.2403 -3.2340 35 1 6.1470 -2.5676 -3.5061 36 1 5.1801 -0.9977 -3.5469 37 1 5.1242 -1.7527 0.8775 38 1 3.6030 -2.3044 0.1319 39 1 3.2657 -2.2381 2.8811 40 1 4.6785 -1.1763 3.0922 41 1 3.0640 -0.6194 3.5934 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695481972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:54 Heat of formation + Delta-G solvation = -56.977054 kcal Electronic energy + Delta-G solvation = -22291.886762 eV Core-core repulsion = 19172.712372 eV Total energy + Delta-G solvation = -3119.174390 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.14045 -37.85079 -36.51292 -34.60107 -33.21325 -32.32091 -30.59454 -28.39217 -26.34502 -25.85092 -24.59821 -22.19732 -21.10056 -20.99613 -19.40912 -18.41214 -16.96152 -16.60302 -16.35030 -15.56012 -15.00951 -14.75034 -14.23351 -13.74943 -13.55662 -13.50920 -13.05338 -13.00656 -12.57754 -12.25956 -11.96204 -11.89272 -11.77386 -11.63811 -11.33168 -11.19842 -10.95316 -10.94496 -10.65365 -10.49297 -10.30835 -10.19118 -9.76634 -9.47520 -9.19704 -9.03666 -8.74399 -8.08884 -7.73545 -6.20011 -4.17066 3.11525 3.20436 3.24276 3.29494 3.61911 3.74724 4.23923 4.77191 4.86138 4.97666 5.14693 5.20603 5.24640 5.40216 5.57199 5.58437 5.62309 5.65183 5.75706 5.84005 5.98780 6.06156 6.14051 6.15233 6.20262 6.30534 6.44153 6.47552 6.61088 6.77160 6.84561 7.04128 7.11442 7.30304 7.42658 7.56000 7.59313 7.86610 8.20600 8.42792 8.76299 8.86406 9.36777 10.81130 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017943 B = 0.008893 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.151073 B = 3147.896297 C = 4294.263056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.173 4.173 5 C 0.502 3.498 6 O -0.558 6.558 7 N -0.582 5.582 8 C 0.131 3.869 9 C 0.037 3.963 10 C -0.480 4.480 11 H 0.061 0.939 12 C 0.070 3.930 13 N -0.876 5.876 14 Si 0.877 3.123 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.277 1.277 18 C -0.196 4.196 19 C -0.207 4.207 20 C 0.086 3.914 21 C 0.077 3.923 22 H 0.059 0.941 23 C -0.140 4.140 24 O -0.388 6.388 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.131 0.869 32 H 0.264 0.736 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.002 0.218 3.960 11.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.047 3.953 3 H 0.073 0.927 4 C -0.213 4.213 5 C 0.289 3.711 6 O -0.438 6.438 7 N -0.311 5.311 8 C 0.010 3.990 9 C 0.035 3.965 10 C -0.517 4.517 11 H 0.079 0.921 12 C -0.132 4.132 13 N -0.514 5.514 14 Si 0.704 3.296 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.202 1.202 18 C -0.235 4.235 19 C -0.244 4.244 20 C -0.038 4.038 21 C 0.018 3.982 22 H 0.077 0.923 23 C -0.197 4.197 24 O -0.308 6.308 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.148 0.852 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.956 0.607 3.776 11.605 hybrid contribution 0.558 -0.739 0.255 0.960 sum -10.399 -0.132 4.031 11.154 Atomic orbital electron populations 1.21768 0.92567 1.02980 1.02400 1.21683 0.94913 0.94923 0.83764 0.92713 1.22788 0.95102 1.02978 1.00441 1.20478 0.86976 0.80876 0.82726 1.90639 1.84894 1.39390 1.28915 1.47969 1.08994 1.48725 1.25391 1.21657 0.78341 0.94483 1.04492 1.19320 0.96075 0.95910 0.85158 1.20614 1.39296 0.93609 0.98215 0.92130 1.24936 0.94837 0.95407 0.98055 1.69766 1.40500 1.18867 1.22227 0.86764 0.78243 0.83141 0.81446 1.19489 1.20885 1.20238 1.22923 0.94401 0.97379 1.08776 1.22886 0.97417 0.98752 1.05367 1.22508 1.02246 0.92844 0.86210 1.22479 0.80772 0.99604 0.95299 0.92261 1.21729 1.02385 1.01624 0.94003 1.86977 1.24361 1.76101 1.43363 0.91800 0.90970 0.91619 0.88661 0.88214 0.92958 0.85204 0.92523 0.91741 0.90617 0.91373 0.90395 0.87045 0.90889 0.91713 0.90517 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.44 37.16 0.35 -1.12 16 2 C 0.11 1.46 3.05 -26.62 -0.08 1.38 16 3 H 0.05 0.82 7.89 -51.93 -0.41 0.41 16 4 C -0.17 -2.64 5.05 -27.40 -0.14 -2.78 16 5 C 0.50 10.08 6.43 -11.04 -0.07 10.01 16 6 O -0.56 -13.03 15.18 5.56 0.08 -12.94 16 7 N -0.58 -11.97 2.44 -172.99 -0.42 -12.39 16 8 C 0.13 3.09 5.07 -4.04 -0.02 3.07 16 9 C 0.04 0.91 1.97 -155.65 -0.31 0.60 16 10 C -0.48 -12.40 8.72 -34.44 -0.30 -12.70 16 11 H 0.06 1.61 7.88 -52.49 -0.41 1.19 16 12 C 0.07 1.73 3.85 -17.82 -0.07 1.66 16 13 N -0.88 -22.25 10.87 55.43 0.60 -21.65 16 14 Si 0.88 19.07 29.53 -169.99 -5.02 14.05 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 18 C -0.20 -4.72 9.88 -26.73 -0.26 -4.99 16 19 C -0.21 -4.90 9.73 -26.73 -0.26 -5.16 16 20 C 0.09 1.56 5.37 -3.58 -0.02 1.54 16 21 C 0.08 1.21 3.12 -26.66 -0.08 1.12 16 22 H 0.06 0.99 8.07 -51.92 -0.42 0.57 16 23 C -0.14 -1.89 9.42 37.16 0.35 -1.54 16 24 O -0.39 -5.81 9.51 -35.18 -0.33 -6.14 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.10 1.40 7.11 -51.93 -0.37 1.03 16 29 H 0.10 1.38 7.92 -51.93 -0.41 0.97 16 30 H 0.05 1.29 7.05 -51.93 -0.37 0.93 16 31 H 0.13 3.22 5.15 -51.93 -0.27 2.96 16 32 H 0.26 6.37 8.32 -40.82 -0.34 6.03 16 33 H 0.06 1.51 8.07 -51.93 -0.42 1.09 16 34 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.08 1.89 6.40 -51.93 -0.33 1.55 16 37 H 0.11 2.24 6.03 -51.93 -0.31 1.93 16 38 H 0.07 1.26 7.07 -51.93 -0.37 0.89 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 321.96 15.07 4.85 4.85 Total: -1.00 -28.00 321.96 -7.75 -35.75 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.60 Total: 7.38 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -0.91 Total: -8.90 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.18 Total: -34.04 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.25 Total: -19.09 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.00 -7.75 -35.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695481972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.225 kcal (2) G-P(sol) polarization free energy of solvation -28.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds