Wall clock time and date at job start Mon Mar 30 2020 04:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.31887 * 2 1 4 4 C 1.53228 * 109.32186 * 240.55566 * 2 1 3 5 5 C 1.51450 * 108.38309 * 156.99007 * 4 2 1 6 6 O 1.21278 * 120.10025 * 249.52208 * 5 4 2 7 7 N 1.33818 * 119.80118 * 69.50506 * 5 4 2 8 8 C 1.46500 * 120.01246 * 180.24930 * 7 5 4 9 9 C 1.53003 * 109.46932 * 264.52479 * 8 7 5 10 10 C 1.50703 * 115.55069 * 278.20477 * 9 8 7 11 11 H 1.07999 * 120.00019 * 145.42527 * 10 9 8 12 12 C 1.37876 * 119.99637 * 325.42363 * 10 9 8 13 13 N 1.31515 * 120.00503 * 341.38167 * 12 10 9 14 14 Si 1.86800 * 119.99423 * 161.37888 * 12 10 9 15 15 H 1.48496 * 109.47690 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46869 * 120.00145 * 14 12 10 17 17 H 1.48500 * 109.47299 * 239.99534 * 14 12 10 18 18 C 1.53002 * 117.49813 * 132.49648 * 9 8 7 19 19 C 1.52997 * 60.00123 * 252.50977 * 18 9 8 20 20 C 1.47208 * 119.97699 * 0.22740 * 7 5 4 21 21 C 1.53140 * 108.57237 * 289.86770 * 20 7 5 22 22 H 1.09008 * 109.21948 * 324.09568 * 21 20 7 23 23 C 1.53001 * 109.25695 * 204.64099 * 21 20 7 24 24 O 1.41709 * 110.57146 * 84.35401 * 21 20 7 25 25 H 1.08994 * 109.47742 * 300.36647 * 1 2 3 26 26 H 1.09005 * 109.46935 * 60.37302 * 1 2 3 27 27 H 1.09004 * 109.46782 * 180.36092 * 1 2 3 28 28 H 1.09003 * 109.67745 * 276.70857 * 4 2 1 29 29 H 1.08995 * 109.68221 * 37.26354 * 4 2 1 30 30 H 1.09004 * 109.47334 * 24.52249 * 8 7 5 31 31 H 1.08994 * 109.47323 * 144.52668 * 8 7 5 32 32 H 0.96995 * 120.00267 * 185.01592 * 13 12 10 33 33 H 1.09002 * 117.49533 * 0.02562 * 18 9 8 34 34 H 1.08998 * 117.49735 * 145.01929 * 18 9 8 35 35 H 1.08998 * 117.49887 * 252.51413 * 19 18 9 36 36 H 1.09002 * 117.51701 * 107.47761 * 19 18 9 37 37 H 1.09004 * 109.62238 * 170.14505 * 20 7 5 38 38 H 1.08994 * 109.77608 * 49.67837 * 20 7 5 39 39 H 1.08992 * 109.46735 * 298.91090 * 23 21 20 40 40 H 1.08996 * 109.46960 * 58.91650 * 23 21 20 41 41 H 1.09001 * 109.46841 * 178.91187 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8906 1.0287 0.0000 4 6 2.0369 -0.7108 -1.2592 5 6 3.4433 -0.2280 -1.5467 6 8 3.6603 0.4730 -2.5123 7 7 4.4459 -0.5768 -0.7319 8 6 5.8071 -0.1079 -1.0025 9 6 6.5695 -1.1794 -1.7846 10 6 7.1546 -2.2950 -0.9575 11 1 7.1979 -3.2976 -1.3566 12 6 7.6346 -2.0357 0.3087 13 7 7.9254 -0.8027 0.6621 14 14 7.8717 -3.4357 1.5225 15 1 7.4750 -4.7166 0.8845 16 1 9.2994 -3.5052 1.9252 17 1 7.0300 -3.1983 2.7226 18 6 7.3527 -0.7294 -3.0196 19 6 6.0592 -1.5300 -3.1838 20 6 4.1803 -1.4316 0.4369 21 6 3.3833 -0.6210 1.4629 22 1 3.7247 0.4141 1.4460 23 6 3.6145 -1.2058 2.8577 24 8 1.9989 -0.6614 1.1627 25 1 -0.3634 0.5195 0.8866 26 1 -0.3633 0.5081 -0.8934 27 1 -0.3633 -1.0277 0.0065 28 1 2.0452 -1.7883 -1.0943 29 1 1.3876 -0.4728 -2.1017 30 1 5.7654 0.8097 -1.5895 31 1 6.3186 0.0867 -0.0599 32 1 8.3309 -0.6285 1.5258 33 1 7.3250 0.3300 -3.2747 34 1 8.2914 -1.2403 -3.2340 35 1 6.1470 -2.5676 -3.5061 36 1 5.1801 -0.9977 -3.5469 37 1 5.1242 -1.7527 0.8775 38 1 3.6030 -2.3044 0.1319 39 1 3.2657 -2.2381 2.8811 40 1 4.6785 -1.1763 3.0922 41 1 3.0640 -0.6194 3.5934 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695481972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:54 Heat of formation + Delta-G solvation = -72.286562 kcal Electronic energy + Delta-G solvation = -22292.550632 eV Core-core repulsion = 19172.712372 eV Total energy + Delta-G solvation = -3119.838260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.61800 -39.28627 -38.34068 -36.10231 -34.52156 -34.28120 -31.85951 -29.65261 -27.87099 -27.66746 -26.22947 -23.36468 -23.01219 -22.25942 -21.23084 -20.06863 -18.49351 -18.18266 -17.75132 -17.15249 -16.65258 -16.51575 -15.61030 -15.49217 -15.08698 -14.89022 -14.53788 -14.30983 -13.94509 -13.64497 -13.47571 -13.24790 -12.97666 -12.88540 -12.83674 -12.75748 -12.50140 -12.40344 -12.22279 -12.12913 -12.05650 -11.72499 -11.57523 -11.09086 -10.80617 -10.71234 -10.65699 -10.01107 -9.41232 -8.12629 -6.17671 1.39809 1.47513 1.57116 1.63844 2.16515 2.41600 2.48063 2.92460 3.44506 3.63880 3.81407 3.95687 4.01279 4.03404 4.11657 4.25398 4.40265 4.49458 4.53257 4.54408 4.65016 4.74166 4.76858 4.78142 4.87739 4.92293 5.01931 5.03997 5.07675 5.08940 5.22811 5.26028 5.34164 5.41721 5.46939 5.72338 5.92877 6.33705 6.40778 6.67387 6.78223 7.24787 7.39597 8.88621 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017943 B = 0.008893 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.151073 B = 3147.896297 C = 4294.263056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.103 3.897 3 H 0.041 0.959 4 C -0.161 4.161 5 C 0.493 3.507 6 O -0.598 6.598 7 N -0.586 5.586 8 C 0.143 3.857 9 C 0.025 3.975 10 C -0.504 4.504 11 H 0.048 0.952 12 C 0.045 3.955 13 N -0.894 5.894 14 Si 0.934 3.066 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.256 1.256 18 C -0.202 4.202 19 C -0.194 4.194 20 C 0.086 3.914 21 C 0.084 3.916 22 H 0.044 0.956 23 C -0.135 4.135 24 O -0.383 6.383 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.030 0.970 31 H 0.118 0.882 32 H 0.269 0.731 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.770 -0.779 5.427 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.045 3.955 3 H 0.059 0.941 4 C -0.201 4.201 5 C 0.282 3.718 6 O -0.481 6.481 7 N -0.314 5.314 8 C 0.021 3.979 9 C 0.024 3.976 10 C -0.541 4.541 11 H 0.066 0.934 12 C -0.156 4.156 13 N -0.531 5.531 14 Si 0.758 3.242 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.180 1.180 18 C -0.241 4.241 19 C -0.231 4.231 20 C -0.037 4.037 21 C 0.025 3.975 22 H 0.062 0.938 23 C -0.193 4.193 24 O -0.303 6.303 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.136 0.864 30 H 0.048 0.952 31 H 0.135 0.865 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.746 -0.397 5.262 13.796 hybrid contribution 1.152 -0.389 -0.240 1.240 sum -11.594 -0.786 5.022 12.659 Atomic orbital electron populations 1.21764 0.89323 1.04106 1.03731 1.21868 0.97210 0.93787 0.82679 0.94071 1.22809 0.91788 1.03536 1.01991 1.21371 0.88603 0.80056 0.81780 1.90612 1.85774 1.41160 1.30543 1.48022 1.08034 1.48946 1.26404 1.21273 0.80083 0.93408 1.03103 1.19455 0.96433 0.96217 0.85480 1.20629 1.40962 0.93148 0.99371 0.93385 1.25451 0.93945 0.97420 0.98833 1.69850 1.40199 1.20360 1.22691 0.85904 0.78091 0.80222 0.79943 1.19796 1.21230 1.18033 1.22945 0.94549 0.97490 1.09092 1.22768 0.96806 0.98710 1.04849 1.22615 1.01894 0.93333 0.85844 1.22353 0.80991 0.98406 0.95732 0.93768 1.21708 1.02306 1.02461 0.92775 1.87010 1.23447 1.76117 1.43733 0.90857 0.89344 0.90555 0.87522 0.86382 0.95176 0.86454 0.92068 0.91693 0.90725 0.90892 0.91052 0.88954 0.89756 0.90601 0.91200 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.44 71.98 0.68 -1.63 16 2 C 0.10 2.62 3.05 30.67 0.09 2.72 16 3 H 0.04 1.18 7.89 -2.38 -0.02 1.16 16 4 C -0.16 -4.62 5.05 30.16 0.15 -4.47 16 5 C 0.49 19.73 6.43 88.05 0.57 20.29 16 6 O -0.60 -28.38 15.18 -3.02 -0.05 -28.43 16 7 N -0.59 -24.29 2.44 -820.14 -2.00 -26.29 16 8 C 0.14 6.95 5.07 86.38 0.44 7.39 16 9 C 0.03 1.28 1.97 -52.92 -0.10 1.18 16 10 C -0.50 -26.25 8.72 25.60 0.22 -26.03 16 11 H 0.05 2.57 7.88 -2.91 -0.02 2.55 16 12 C 0.04 2.21 3.85 84.65 0.33 2.53 16 13 N -0.89 -45.48 10.87 21.45 0.23 -45.25 16 14 Si 0.93 38.43 29.53 68.60 2.03 40.46 16 15 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.29 -11.93 7.11 99.48 0.71 -11.23 16 17 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 18 C -0.20 -9.96 9.88 30.59 0.30 -9.65 16 19 C -0.19 -9.32 9.73 30.59 0.30 -9.03 16 20 C 0.09 3.07 5.37 86.29 0.46 3.53 16 21 C 0.08 2.52 3.12 30.64 0.10 2.61 16 22 H 0.04 1.46 8.07 -2.38 -0.02 1.44 16 23 C -0.14 -3.34 9.42 71.98 0.68 -2.66 16 24 O -0.38 -10.52 9.51 -148.80 -1.42 -11.94 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 1.28 8.11 -2.38 -0.02 1.26 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.11 2.85 7.11 -2.39 -0.02 2.83 16 29 H 0.12 2.97 7.92 -2.39 -0.02 2.95 16 30 H 0.03 1.55 7.05 -2.38 -0.02 1.53 16 31 H 0.12 5.99 5.15 -2.39 -0.01 5.98 16 32 H 0.27 12.88 8.32 -92.71 -0.77 12.11 16 33 H 0.06 3.13 8.07 -2.39 -0.02 3.11 16 34 H 0.07 3.63 8.14 -2.39 -0.02 3.61 16 35 H 0.07 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.07 3.52 6.40 -2.39 -0.02 3.50 16 37 H 0.09 3.67 6.03 -2.39 -0.01 3.66 16 38 H 0.08 2.78 7.07 -2.39 -0.02 2.76 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.83 8.09 -2.39 -0.02 1.81 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -60.13 321.96 4.01 -56.12 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 1.00 Total: 28.54 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 4.21 Total: -13.22 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -1.77 Total: -71.54 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -1.46 Total: -40.36 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -60.13 4.01 -56.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695481972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.164 kcal (2) G-P(sol) polarization free energy of solvation -60.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds