Wall clock time and date at job start Mon Mar 30 2020 04:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.22368 * 2 1 4 4 C 1.53138 * 109.25643 * 240.54620 * 2 1 3 5 5 N 1.47198 * 108.57920 * 155.36996 * 4 2 1 6 6 C 1.46504 * 120.01076 * 250.16943 * 5 4 2 7 7 C 1.53004 * 109.46998 * 271.46430 * 6 5 4 8 8 C 1.50703 * 115.54874 * 185.80060 * 7 6 5 9 9 H 1.07995 * 119.99523 * 144.62029 * 8 7 6 10 10 C 1.37872 * 120.00066 * 324.62620 * 8 7 6 11 11 N 1.31514 * 120.00331 * 350.25882 * 10 8 7 12 12 Si 1.86801 * 120.00214 * 170.25816 * 10 8 7 13 13 H 1.48510 * 109.46661 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47289 * 119.99537 * 12 10 8 15 15 H 1.48496 * 109.47341 * 240.00044 * 12 10 8 16 16 C 1.52998 * 117.49704 * 40.13296 * 7 6 5 17 17 C 1.52995 * 117.49807 * 331.47643 * 7 6 5 18 18 C 1.33821 * 119.98207 * 70.14410 * 5 4 2 19 19 O 1.21285 * 120.10180 * 179.73645 * 18 5 4 20 20 C 1.51448 * 119.79358 * 359.75877 * 18 5 4 21 21 C 1.53230 * 108.41001 * 290.48606 * 20 18 5 22 22 H 1.08999 * 109.32035 * 322.48319 * 21 20 18 23 23 C 1.53000 * 109.31612 * 203.03995 * 21 20 18 24 24 O 1.41707 * 109.26278 * 119.46448 * 2 1 3 25 25 H 1.09000 * 109.46876 * 179.45677 * 1 2 3 26 26 H 1.09006 * 109.46507 * 299.45283 * 1 2 3 27 27 H 1.08995 * 109.47072 * 59.45397 * 1 2 3 28 28 H 1.09002 * 109.61953 * 35.64036 * 4 2 1 29 29 H 1.08997 * 109.76827 * 275.19127 * 4 2 1 30 30 H 1.08999 * 109.46827 * 31.46400 * 6 5 4 31 31 H 1.08995 * 109.47193 * 151.46613 * 6 5 4 32 32 H 0.97003 * 120.00332 * 185.01026 * 11 10 8 33 33 H 1.08997 * 117.50121 * 0.02562 * 16 7 6 34 34 H 1.08996 * 117.49736 * 145.01870 * 16 7 6 35 35 H 1.09000 * 117.49518 * 214.98114 * 17 7 6 36 36 H 1.09000 * 117.50032 * 359.97438 * 17 7 6 37 37 H 1.08997 * 109.68475 * 50.22405 * 20 18 5 38 38 H 1.09002 * 109.68453 * 170.74560 * 20 18 5 39 39 H 1.08996 * 109.47489 * 60.00233 * 23 21 20 40 40 H 1.09010 * 109.46576 * 179.97438 * 23 21 20 41 41 H 1.08998 * 109.47446 * 299.99524 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8889 1.0292 0.0000 4 6 2.0351 -0.7109 -1.2588 5 7 3.3871 -0.2166 -1.5661 6 6 3.6075 0.6341 -2.7383 7 6 3.8939 -0.2434 -3.9586 8 6 4.2763 0.4956 -5.2151 9 1 5.0008 0.0691 -5.8930 10 6 3.7013 1.7161 -5.4991 11 7 2.6862 2.1474 -4.7829 12 14 4.3641 2.7572 -6.9013 13 1 5.5005 2.0521 -7.5470 14 1 3.2897 2.9827 -7.9013 15 1 4.8289 4.0640 -6.3708 16 6 3.0739 -1.5255 -4.1148 17 6 4.5486 -1.6041 -3.7122 18 6 4.4149 -0.5440 -0.7741 19 8 5.5306 -0.1419 -1.0279 20 6 4.1805 -1.4187 0.4399 21 6 3.3816 -0.6132 1.4698 22 1 3.7195 0.4230 1.4580 23 6 3.6138 -1.2015 2.8630 24 8 1.9975 -0.6580 1.1647 25 1 -0.3633 -1.0276 -0.0097 26 1 -0.3632 0.5054 0.8949 27 1 -0.3633 0.5223 -0.8850 28 1 1.3680 -0.4952 -2.0935 29 1 2.0690 -1.7866 -1.0862 30 1 2.7171 1.2349 -2.9237 31 1 4.4577 1.2912 -2.5557 32 1 2.2352 2.9707 -5.0272 33 1 2.3301 -1.7438 -3.3486 34 1 2.8113 -1.8348 -5.1265 35 1 5.2556 -1.9650 -4.4592 36 1 4.7756 -1.8740 -2.6809 37 1 3.6169 -2.3055 0.1501 38 1 5.1376 -1.7159 0.8686 39 1 4.6753 -1.1527 3.1057 40 1 3.0468 -0.6298 3.5978 41 1 3.2849 -2.2405 2.8781 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695481979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:58 Heat of formation + Delta-G solvation = -53.428952 kcal Electronic energy + Delta-G solvation = -22039.296893 eV Core-core repulsion = 18920.276360 eV Total energy + Delta-G solvation = -3119.020533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33130 -37.97039 -36.60467 -34.52495 -33.25493 -32.17713 -30.68485 -28.46571 -26.68353 -25.71916 -24.68220 -22.34111 -21.31254 -20.89287 -19.48949 -18.30811 -17.01197 -16.73564 -16.39288 -15.71547 -15.24963 -14.68552 -14.29337 -13.76784 -13.68099 -13.47382 -13.10740 -12.80364 -12.50168 -12.33110 -12.10877 -11.98544 -11.74622 -11.71400 -11.41437 -11.24299 -11.02220 -11.00457 -10.72163 -10.56341 -10.40822 -10.15985 -9.72407 -9.58672 -9.21074 -8.96944 -8.75970 -8.08005 -7.80556 -6.12725 -4.13770 3.15064 3.23871 3.32989 3.38312 3.51535 3.65917 4.33688 4.68629 4.90502 4.97061 5.03347 5.09234 5.12361 5.25606 5.49300 5.50683 5.54877 5.57526 5.64076 5.70870 5.82791 5.94579 6.00012 6.07620 6.10002 6.18062 6.24853 6.47136 6.52990 6.77250 6.83628 7.00051 7.11359 7.24587 7.39134 7.49262 7.66191 7.87801 8.14674 8.38279 8.77023 8.86899 9.45751 10.90486 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025699 B = 0.006070 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.279020 B = 4611.561770 C = 4979.265066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.077 3.923 3 H 0.062 0.938 4 C 0.083 3.917 5 N -0.603 5.603 6 C 0.149 3.851 7 C 0.045 3.955 8 C -0.481 4.481 9 H 0.062 0.938 10 C 0.068 3.932 11 N -0.889 5.889 12 Si 0.899 3.101 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.281 1.281 16 C -0.208 4.208 17 C -0.203 4.203 18 C 0.503 3.497 19 O -0.544 6.544 20 C -0.174 4.174 21 C 0.105 3.895 22 H 0.056 0.944 23 C -0.140 4.140 24 O -0.387 6.387 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.263 0.737 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 -4.852 12.133 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.018 3.982 3 H 0.080 0.920 4 C -0.041 4.041 5 N -0.334 5.334 6 C 0.029 3.971 7 C 0.043 3.957 8 C -0.519 4.519 9 H 0.080 0.920 10 C -0.134 4.134 11 N -0.528 5.528 12 Si 0.727 3.273 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.207 1.207 16 C -0.246 4.246 17 C -0.240 4.240 18 C 0.290 3.710 19 O -0.422 6.422 20 C -0.214 4.214 21 C 0.047 3.953 22 H 0.074 0.926 23 C -0.197 4.197 24 O -0.307 6.307 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.092 0.908 30 H 0.139 0.861 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.443 -4.504 12.129 13.680 hybrid contribution 0.462 0.447 -1.073 1.251 sum -3.981 -4.057 11.055 12.431 Atomic orbital electron populations 1.21737 0.92301 1.02928 1.02761 1.22465 0.95220 0.95832 0.84667 0.92023 1.22543 0.84910 0.98589 0.98081 1.48351 1.06871 1.50597 1.27591 1.21581 1.04466 0.91134 0.79965 1.19363 0.96480 0.85143 0.94688 1.20612 1.23981 1.02629 1.04667 0.91952 1.24983 0.94554 0.97157 0.96705 1.69722 1.20562 1.23164 1.39316 0.86410 0.79104 0.80272 0.81552 1.19665 1.20975 1.20707 1.23043 0.92410 1.09487 0.99628 1.22798 0.95142 1.07003 0.99085 1.20435 0.84911 0.81446 0.84225 1.90704 1.23062 1.54964 1.73496 1.22815 1.03309 0.99827 0.95479 1.21705 0.81106 0.98480 0.93995 0.92560 1.21774 1.01947 1.01800 0.94228 1.86985 1.23416 1.76382 1.43953 0.91739 0.91898 0.90414 0.87935 0.90780 0.86092 0.91343 0.92682 0.91666 0.90876 0.91218 0.91602 0.88811 0.88102 0.90893 0.91730 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.41 37.16 0.35 -1.20 16 2 C 0.08 1.06 3.12 -26.66 -0.08 0.98 16 3 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 4 C 0.08 1.30 3.59 -3.59 -0.01 1.29 16 5 N -0.60 -11.77 1.73 -172.99 -0.30 -12.07 16 6 C 0.15 3.53 4.69 -4.04 -0.02 3.51 16 7 C 0.04 1.12 2.37 -155.66 -0.37 0.75 16 8 C -0.48 -13.27 9.05 -34.44 -0.31 -13.58 16 9 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 10 C 0.07 1.81 5.26 -17.82 -0.09 1.72 16 11 N -0.89 -23.72 10.72 55.43 0.59 -23.13 16 12 Si 0.90 20.91 29.55 -169.99 -5.02 15.89 16 13 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 16 C -0.21 -4.71 9.62 -26.70 -0.26 -4.97 16 17 C -0.20 -4.77 9.53 -26.70 -0.25 -5.02 16 18 C 0.50 9.90 4.95 -11.04 -0.05 9.85 16 19 O -0.54 -13.01 16.40 5.55 0.09 -12.91 16 20 C -0.17 -2.55 5.05 -27.40 -0.14 -2.69 16 21 C 0.11 1.39 3.05 -26.61 -0.08 1.31 16 22 H 0.06 0.81 7.90 -51.93 -0.41 0.40 16 23 C -0.14 -1.39 9.44 37.16 0.35 -1.04 16 24 O -0.39 -5.31 9.52 -35.19 -0.33 -5.65 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 28 H 0.10 1.65 7.03 -51.93 -0.37 1.29 16 29 H 0.07 1.09 7.06 -51.93 -0.37 0.72 16 30 H 0.12 2.99 5.91 -51.93 -0.31 2.68 16 31 H 0.07 1.83 7.37 -51.93 -0.38 1.44 16 32 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 33 H 0.06 1.33 5.44 -51.93 -0.28 1.04 16 34 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 35 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.07 1.51 5.68 -51.93 -0.29 1.22 16 37 H 0.09 1.28 7.11 -51.93 -0.37 0.92 16 38 H 0.10 1.36 7.93 -51.93 -0.41 0.95 16 39 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 40 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 319.10 15.07 4.81 4.81 Total: -1.00 -29.87 319.10 -7.67 -37.54 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.53 Total: 4.60 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -0.97 Total: -9.09 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.29 Total: -35.19 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.24 Total: -18.56 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.87 -7.67 -37.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695481979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.884 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds