Wall clock time and date at job start Mon Mar 30 2020 04:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.22368 * 2 1 4 4 C 1.53138 * 109.25643 * 240.54620 * 2 1 3 5 5 N 1.47198 * 108.57920 * 155.36996 * 4 2 1 6 6 C 1.46504 * 120.01076 * 250.16943 * 5 4 2 7 7 C 1.53004 * 109.46998 * 271.46430 * 6 5 4 8 8 C 1.50703 * 115.54874 * 185.80060 * 7 6 5 9 9 H 1.07995 * 119.99523 * 144.62029 * 8 7 6 10 10 C 1.37872 * 120.00066 * 324.62620 * 8 7 6 11 11 N 1.31514 * 120.00331 * 350.25882 * 10 8 7 12 12 Si 1.86801 * 120.00214 * 170.25816 * 10 8 7 13 13 H 1.48510 * 109.46661 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47289 * 119.99537 * 12 10 8 15 15 H 1.48496 * 109.47341 * 240.00044 * 12 10 8 16 16 C 1.52998 * 117.49704 * 40.13296 * 7 6 5 17 17 C 1.52995 * 117.49807 * 331.47643 * 7 6 5 18 18 C 1.33821 * 119.98207 * 70.14410 * 5 4 2 19 19 O 1.21285 * 120.10180 * 179.73645 * 18 5 4 20 20 C 1.51448 * 119.79358 * 359.75877 * 18 5 4 21 21 C 1.53230 * 108.41001 * 290.48606 * 20 18 5 22 22 H 1.08999 * 109.32035 * 322.48319 * 21 20 18 23 23 C 1.53000 * 109.31612 * 203.03995 * 21 20 18 24 24 O 1.41707 * 109.26278 * 119.46448 * 2 1 3 25 25 H 1.09000 * 109.46876 * 179.45677 * 1 2 3 26 26 H 1.09006 * 109.46507 * 299.45283 * 1 2 3 27 27 H 1.08995 * 109.47072 * 59.45397 * 1 2 3 28 28 H 1.09002 * 109.61953 * 35.64036 * 4 2 1 29 29 H 1.08997 * 109.76827 * 275.19127 * 4 2 1 30 30 H 1.08999 * 109.46827 * 31.46400 * 6 5 4 31 31 H 1.08995 * 109.47193 * 151.46613 * 6 5 4 32 32 H 0.97003 * 120.00332 * 185.01026 * 11 10 8 33 33 H 1.08997 * 117.50121 * 0.02562 * 16 7 6 34 34 H 1.08996 * 117.49736 * 145.01870 * 16 7 6 35 35 H 1.09000 * 117.49518 * 214.98114 * 17 7 6 36 36 H 1.09000 * 117.50032 * 359.97438 * 17 7 6 37 37 H 1.08997 * 109.68475 * 50.22405 * 20 18 5 38 38 H 1.09002 * 109.68453 * 170.74560 * 20 18 5 39 39 H 1.08996 * 109.47489 * 60.00233 * 23 21 20 40 40 H 1.09010 * 109.46576 * 179.97438 * 23 21 20 41 41 H 1.08998 * 109.47446 * 299.99524 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8889 1.0292 0.0000 4 6 2.0351 -0.7109 -1.2588 5 7 3.3871 -0.2166 -1.5661 6 6 3.6075 0.6341 -2.7383 7 6 3.8939 -0.2434 -3.9586 8 6 4.2763 0.4956 -5.2151 9 1 5.0008 0.0691 -5.8930 10 6 3.7013 1.7161 -5.4991 11 7 2.6862 2.1474 -4.7829 12 14 4.3641 2.7572 -6.9013 13 1 5.5005 2.0521 -7.5470 14 1 3.2897 2.9827 -7.9013 15 1 4.8289 4.0640 -6.3708 16 6 3.0739 -1.5255 -4.1148 17 6 4.5486 -1.6041 -3.7122 18 6 4.4149 -0.5440 -0.7741 19 8 5.5306 -0.1419 -1.0279 20 6 4.1805 -1.4187 0.4399 21 6 3.3816 -0.6132 1.4698 22 1 3.7195 0.4230 1.4580 23 6 3.6138 -1.2015 2.8630 24 8 1.9975 -0.6580 1.1647 25 1 -0.3633 -1.0276 -0.0097 26 1 -0.3632 0.5054 0.8949 27 1 -0.3633 0.5223 -0.8850 28 1 1.3680 -0.4952 -2.0935 29 1 2.0690 -1.7866 -1.0862 30 1 2.7171 1.2349 -2.9237 31 1 4.4577 1.2912 -2.5557 32 1 2.2352 2.9707 -5.0272 33 1 2.3301 -1.7438 -3.3486 34 1 2.8113 -1.8348 -5.1265 35 1 5.2556 -1.9650 -4.4592 36 1 4.7756 -1.8740 -2.6809 37 1 3.6169 -2.3055 0.1501 38 1 5.1376 -1.7159 0.8686 39 1 4.6753 -1.1527 3.1057 40 1 3.0468 -0.6298 3.5978 41 1 3.2849 -2.2405 2.8781 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695481979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:58 Heat of formation + Delta-G solvation = -70.692909 kcal Electronic energy + Delta-G solvation = -22040.045515 eV Core-core repulsion = 18920.276360 eV Total energy + Delta-G solvation = -3119.769154 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.77428 -39.32279 -38.39233 -35.96172 -34.53659 -34.20289 -31.85204 -29.70285 -28.20267 -27.45976 -26.32002 -23.47372 -22.90988 -22.22740 -21.28338 -19.96008 -18.42591 -18.38808 -17.76823 -17.29341 -16.81956 -16.51392 -15.71980 -15.23131 -15.06200 -14.91273 -14.31169 -14.21882 -13.95798 -13.79647 -13.41395 -13.22140 -13.10833 -12.88610 -12.82521 -12.80145 -12.57815 -12.46271 -12.38980 -12.15333 -11.97256 -11.73737 -11.57268 -11.10717 -10.82769 -10.69511 -10.65377 -10.03175 -9.46239 -8.16390 -6.24787 1.37170 1.41787 1.52116 1.62055 2.12491 2.38837 2.47985 2.94705 3.40871 3.60731 3.79242 3.92262 4.00368 4.00800 4.10261 4.26605 4.37528 4.46068 4.52907 4.56233 4.57528 4.68805 4.76069 4.80878 4.88546 4.96407 5.02596 5.03096 5.09600 5.14467 5.24297 5.29043 5.34869 5.40421 5.52247 5.68389 5.89230 6.33438 6.35873 6.60304 6.73538 7.23476 7.36613 8.85539 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025699 B = 0.006070 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.279020 B = 4611.561770 C = 4979.265066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.081 3.919 3 H 0.041 0.959 4 C 0.080 3.920 5 N -0.603 5.603 6 C 0.171 3.829 7 C 0.012 3.988 8 C -0.515 4.515 9 H 0.046 0.954 10 C 0.031 3.969 11 N -0.901 5.901 12 Si 0.957 3.043 13 H -0.276 1.276 14 H -0.271 1.271 15 H -0.279 1.279 16 C -0.185 4.185 17 C -0.198 4.198 18 C 0.493 3.507 19 O -0.596 6.596 20 C -0.161 4.161 21 C 0.104 3.896 22 H 0.038 0.962 23 C -0.133 4.133 24 O -0.383 6.383 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.025 0.975 32 H 0.268 0.732 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.268 -5.936 13.393 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.022 3.978 3 H 0.059 0.941 4 C -0.042 4.042 5 N -0.333 5.333 6 C 0.049 3.951 7 C 0.011 3.989 8 C -0.553 4.553 9 H 0.064 0.936 10 C -0.170 4.170 11 N -0.539 5.539 12 Si 0.782 3.218 13 H -0.201 1.201 14 H -0.197 1.197 15 H -0.204 1.204 16 C -0.222 4.222 17 C -0.235 4.235 18 C 0.282 3.718 19 O -0.478 6.478 20 C -0.201 4.201 21 C 0.046 3.954 22 H 0.056 0.944 23 C -0.190 4.190 24 O -0.302 6.302 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.920 -5.611 13.410 15.696 hybrid contribution 0.920 0.794 -1.456 1.896 sum -5.000 -4.817 11.955 13.825 Atomic orbital electron populations 1.21720 0.89784 1.04106 1.03466 1.22410 0.97019 0.94377 0.83967 0.94104 1.22786 0.82635 0.99795 0.99012 1.48363 1.08759 1.49897 1.26315 1.20971 1.01857 0.90994 0.81309 1.19483 0.98744 0.86078 0.94584 1.20807 1.24597 1.04085 1.05802 0.93579 1.25613 0.94677 0.97744 0.98974 1.69796 1.20763 1.23394 1.39974 0.85520 0.78582 0.78516 0.79135 1.20073 1.19679 1.20438 1.23013 0.92354 1.06680 1.00191 1.22730 0.95788 1.05867 0.99129 1.21400 0.83954 0.81236 0.85169 1.90675 1.25135 1.57058 1.74943 1.22823 1.04771 0.99264 0.93210 1.21834 0.80634 0.97575 0.95401 0.94413 1.21766 1.03081 1.02350 0.91798 1.87024 1.23610 1.76071 1.43517 0.90277 0.90805 0.90181 0.88214 0.88811 0.87269 0.95641 0.92266 0.88994 0.91303 0.91916 0.91104 0.86991 0.86662 0.89604 0.90865 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.41 71.98 0.68 -1.93 16 2 C 0.08 2.11 3.12 30.64 0.10 2.20 16 3 H 0.04 1.24 8.07 -2.39 -0.02 1.22 16 4 C 0.08 2.39 3.59 86.29 0.31 2.70 16 5 N -0.60 -23.61 1.73 -820.15 -1.42 -25.03 16 6 C 0.17 8.38 4.69 86.38 0.40 8.79 16 7 C 0.01 0.64 2.37 -52.93 -0.13 0.52 16 8 C -0.52 -29.24 9.05 25.60 0.23 -29.00 16 9 H 0.05 2.67 7.83 -2.91 -0.02 2.65 16 10 C 0.03 1.66 5.26 84.65 0.45 2.10 16 11 N -0.90 -48.66 10.72 21.45 0.23 -48.43 16 12 Si 0.96 43.41 29.55 68.60 2.03 45.44 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 16 C -0.18 -8.25 9.62 30.62 0.29 -7.95 16 17 C -0.20 -9.35 9.53 30.61 0.29 -9.06 16 18 C 0.49 19.44 4.95 88.04 0.44 19.88 16 19 O -0.60 -29.41 16.40 -3.04 -0.05 -29.46 16 20 C -0.16 -4.39 5.05 30.16 0.15 -4.23 16 21 C 0.10 2.52 3.05 30.67 0.09 2.61 16 22 H 0.04 1.06 7.90 -2.39 -0.02 1.05 16 23 C -0.13 -2.20 9.44 71.98 0.68 -1.52 16 24 O -0.38 -9.48 9.52 -148.82 -1.42 -10.89 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.30 8.14 -2.38 -0.02 1.29 16 27 H 0.08 1.54 8.11 -2.39 -0.02 1.52 16 28 H 0.10 3.06 7.03 -2.39 -0.02 3.04 16 29 H 0.09 2.46 7.06 -2.39 -0.02 2.44 16 30 H 0.11 5.57 5.91 -2.39 -0.01 5.56 16 31 H 0.03 1.43 7.37 -2.39 -0.02 1.41 16 32 H 0.27 13.58 8.32 -92.71 -0.77 12.81 16 33 H 0.09 3.55 5.44 -2.39 -0.01 3.54 16 34 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.07 3.25 5.68 -2.39 -0.01 3.24 16 37 H 0.11 2.68 7.11 -2.39 -0.02 2.67 16 38 H 0.12 2.84 7.93 -2.39 -0.02 2.83 16 39 H 0.09 1.22 8.12 -2.39 -0.02 1.20 16 40 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -66.23 319.10 4.36 -61.86 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 1.01 Total: 21.42 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 3.99 Total: -14.91 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.19 Total: -73.46 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -1.47 Total: -40.36 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -66.23 4.36 -61.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695481979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.829 kcal (2) G-P(sol) polarization free energy of solvation -66.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds