Wall clock time and date at job start Mon Mar 30 2020 05:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.57049 * 2 1 4 4 C 1.54806 * 110.55021 * 122.83561 * 2 1 3 5 5 O 1.44427 * 104.79887 * 142.65929 * 4 2 1 6 6 C 1.44415 * 105.27881 * 319.41546 * 5 4 2 7 7 C 1.54475 * 104.80572 * 40.51137 * 6 5 4 8 8 H 1.08997 * 110.51307 * 94.80342 * 7 6 5 9 9 C 1.50699 * 110.51309 * 217.37676 * 7 6 5 10 10 O 1.21292 * 119.99760 * 49.95833 * 9 7 6 11 11 N 1.34780 * 120.00132 * 229.95926 * 9 7 6 12 12 C 1.37093 * 120.00002 * 359.97438 * 11 9 7 13 13 H 1.08002 * 120.00057 * 127.71335 * 12 11 9 14 14 C 1.38950 * 120.00214 * 307.71604 * 12 11 9 15 15 N 1.31417 * 119.99756 * 338.80508 * 14 12 11 16 16 Si 1.86798 * 120.00355 * 158.81300 * 14 12 11 17 17 H 1.48499 * 109.46766 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47235 * 119.99498 * 16 14 12 19 19 H 1.48505 * 109.46933 * 239.99673 * 16 14 12 20 20 C 1.46504 * 119.99899 * 180.02562 * 11 9 7 21 21 C 1.54259 * 110.07657 * 120.22861 * 20 11 9 22 22 C 1.54893 * 104.19458 * 95.69507 * 21 20 11 23 23 C 1.54881 * 102.75209 * 37.94148 * 22 21 20 24 24 C 1.53882 * 110.02906 * 237.42216 * 20 11 9 25 25 H 1.08987 * 109.47591 * 187.81128 * 1 2 3 26 26 H 1.09004 * 109.47018 * 307.82077 * 1 2 3 27 27 H 1.09000 * 109.46720 * 67.80998 * 1 2 3 28 28 H 1.09001 * 110.43687 * 23.80317 * 4 2 1 29 29 H 1.08995 * 110.39949 * 261.51143 * 4 2 1 30 30 H 1.08995 * 110.37581 * 281.67941 * 6 5 4 31 31 H 1.09009 * 110.46818 * 159.38957 * 6 5 4 32 32 H 0.96995 * 119.99939 * 175.47384 * 15 14 12 33 33 H 1.09004 * 110.01771 * 358.80727 * 20 11 9 34 34 H 1.09001 * 110.48842 * 214.37030 * 21 20 11 35 35 H 1.09001 * 110.48806 * 337.01829 * 21 20 11 36 36 H 1.09006 * 110.75521 * 279.62458 * 22 21 20 37 37 H 1.09001 * 110.91446 * 156.33115 * 22 21 20 38 38 H 1.08997 * 110.48951 * 203.37958 * 23 22 21 39 39 H 1.09002 * 110.48507 * 80.73322 * 23 22 21 40 40 H 1.09000 * 110.03124 * 359.94823 * 24 20 11 41 41 H 1.08995 * 110.03203 * 121.37933 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9130 1.0205 0.0000 4 6 2.0734 -0.7860 1.2180 5 8 3.2425 -1.4736 0.7215 6 6 2.8779 -1.9424 -0.5949 7 6 2.0714 -0.7815 -1.2180 8 1 2.7201 -0.1465 -1.8214 9 6 0.9345 -1.3154 -2.0506 10 8 0.1837 -2.1485 -1.5886 11 7 0.7520 -0.8673 -3.3085 12 6 1.6003 0.0747 -3.8305 13 1 2.0804 -0.0991 -4.7822 14 6 1.8426 1.2530 -3.1350 15 7 0.9890 1.6665 -2.2254 16 14 3.3815 2.2494 -3.4931 17 1 4.1737 1.5733 -4.5517 18 1 2.9959 3.6073 -3.9540 19 1 4.1986 2.3593 -2.2580 20 6 -0.3537 -1.3860 -4.1177 21 6 -1.2927 -0.2343 -4.5317 22 6 -0.8033 0.1651 -5.9459 23 6 -0.4388 -1.2002 -6.5799 24 6 0.1892 -2.0003 -5.4200 25 1 -0.3634 -1.0180 0.1396 26 1 -0.3633 0.6302 0.8118 27 1 -0.3633 0.3881 -0.9516 28 1 1.3320 -1.5035 1.5695 29 1 2.3480 -0.1012 2.0203 30 1 2.2598 -2.8371 -0.5214 31 1 3.7698 -2.1458 -1.1877 32 1 1.1895 2.4528 -1.6941 33 1 -0.9087 -2.1361 -3.5542 34 1 -2.3260 -0.5792 -4.5690 35 1 -1.1941 0.6047 -3.8428 36 1 0.0743 0.8087 -5.8836 37 1 -1.5986 0.6527 -6.5097 38 1 0.2829 -1.0662 -7.3856 39 1 -1.3342 -1.7011 -6.9478 40 1 1.2752 -1.9116 -5.4503 41 1 -0.1023 -3.0483 -5.4883 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705257457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:54 Heat of formation + Delta-G solvation = -83.281097 kcal Electronic energy + Delta-G solvation = -22755.311878 eV Core-core repulsion = 19634.996859 eV Total energy + Delta-G solvation = -3120.315019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.78520 -38.14917 -36.38051 -34.12104 -32.53801 -31.21612 -29.25845 -27.91605 -27.07063 -25.34534 -24.70450 -22.61936 -20.82523 -19.95791 -19.23276 -18.68297 -16.55649 -16.04583 -15.55312 -15.22964 -14.64742 -14.56320 -14.44403 -14.21466 -13.64624 -13.33397 -12.83003 -12.65304 -12.23688 -11.75600 -11.55806 -11.40173 -11.30284 -11.09123 -10.74427 -10.68045 -10.52493 -10.46630 -10.36581 -10.24125 -10.13202 -9.95503 -9.84540 -9.76933 -9.69928 -9.22887 -8.71239 -8.22317 -7.34256 -6.39307 -4.18748 3.08664 3.21586 3.22758 3.96558 4.09609 4.56904 4.81581 4.84461 5.37695 5.41336 5.50526 5.58474 5.63926 5.81753 5.99320 6.04472 6.15452 6.20848 6.26436 6.31855 6.33192 6.35831 6.43097 6.46675 6.54469 6.58688 6.60984 6.64810 6.75713 6.87859 6.95627 7.07698 7.10068 7.19332 7.24018 7.35780 7.41526 7.62623 8.00806 8.63606 8.91491 9.58947 10.01173 10.60054 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018299 B = 0.009617 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.799220 B = 2910.790787 C = 3642.379200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 H 0.076 0.924 4 C 0.044 3.956 5 O -0.385 6.385 6 C 0.055 3.945 7 C -0.118 4.118 8 H 0.110 0.890 9 C 0.528 3.472 10 O -0.607 6.607 11 N -0.443 5.443 12 C -0.339 4.339 13 H 0.081 0.919 14 C 0.058 3.942 15 N -0.844 5.844 16 Si 0.891 3.109 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.276 1.276 20 C 0.132 3.868 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.127 4.127 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.269 0.731 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 -1.188 -1.683 2.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 H 0.094 0.906 4 C -0.033 4.033 5 O -0.304 6.304 6 C -0.022 4.022 7 C -0.140 4.140 8 H 0.128 0.872 9 C 0.318 3.682 10 O -0.493 6.493 11 N -0.162 5.162 12 C -0.467 4.467 13 H 0.099 0.901 14 C -0.150 4.150 15 N -0.478 5.478 16 Si 0.717 3.283 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.202 1.202 20 C 0.028 3.972 21 C -0.158 4.158 22 C -0.152 4.152 23 C -0.156 4.156 24 C -0.165 4.165 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.223 -1.438 -1.290 1.945 hybrid contribution 0.591 0.886 -0.272 1.099 sum 0.368 -0.552 -1.562 1.697 Atomic orbital electron populations 1.22032 0.93737 1.01114 1.03236 1.22039 0.97478 0.98613 0.91532 0.90559 1.23696 0.87632 0.94879 0.97090 1.88985 1.35730 1.74329 1.31372 1.23408 0.98769 0.96827 0.83245 1.22475 0.97627 0.97039 0.96819 0.87217 1.19798 0.85265 0.80524 0.82638 1.90477 1.49265 1.36976 1.72624 1.43404 1.24905 1.36485 1.11449 1.19093 1.22880 0.96490 1.08278 0.90125 1.25440 0.97119 0.95572 0.96863 1.69985 1.31804 1.23613 1.22392 0.86462 0.82889 0.79934 0.79054 1.19074 1.20710 1.20151 1.21543 0.89032 0.95191 0.91433 1.22519 0.96490 0.99598 0.97213 1.22426 1.00713 0.96522 0.95566 1.22280 0.99229 0.96775 0.97351 1.22436 1.01467 0.97810 0.94827 0.92346 0.95334 0.88605 0.92648 0.90297 0.91896 0.89802 0.92077 0.90573 0.93495 0.89801 0.90283 0.93535 0.92695 0.92914 0.90972 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 7.68 37.16 0.29 -2.80 16 2 C -0.08 -1.61 2.67 -88.88 -0.24 -1.84 16 3 H 0.08 1.61 7.51 -51.93 -0.39 1.22 16 4 C 0.04 0.82 7.19 38.11 0.27 1.10 16 5 O -0.39 -7.80 11.65 -35.23 -0.41 -8.21 16 6 C 0.05 1.11 7.14 37.93 0.27 1.38 16 7 C -0.12 -2.62 2.33 -90.21 -0.21 -2.83 16 8 H 0.11 2.54 4.67 -51.93 -0.24 2.30 16 9 C 0.53 12.59 4.38 -10.98 -0.05 12.54 16 10 O -0.61 -15.56 13.55 5.55 0.08 -15.48 16 11 N -0.44 -10.23 2.31 -106.54 -0.25 -10.47 16 12 C -0.34 -7.83 6.22 -14.94 -0.09 -7.92 16 13 H 0.08 1.87 7.13 -52.49 -0.37 1.50 16 14 C 0.06 1.33 3.13 -17.47 -0.05 1.27 16 15 N -0.84 -19.85 8.77 55.50 0.49 -19.36 16 16 Si 0.89 18.37 29.15 -169.99 -4.96 13.41 16 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 20 C 0.13 2.78 3.35 -66.81 -0.22 2.55 16 21 C -0.12 -2.36 6.12 -25.07 -0.15 -2.52 16 22 C -0.11 -2.01 6.56 -24.74 -0.16 -2.17 16 23 C -0.12 -1.89 6.83 -25.07 -0.17 -2.06 16 24 C -0.13 -2.30 6.24 -25.61 -0.16 -2.46 16 25 H 0.06 1.32 6.30 -51.94 -0.33 0.99 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.10 2.32 5.49 -51.93 -0.28 2.04 16 28 H 0.06 1.02 7.75 -51.93 -0.40 0.62 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.32 7.34 -51.93 -0.38 0.94 16 31 H 0.08 1.54 8.14 -51.92 -0.42 1.12 16 32 H 0.27 6.13 8.22 -40.82 -0.34 5.80 16 33 H 0.08 1.71 6.94 -51.93 -0.36 1.35 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.91 8.02 -51.93 -0.42 1.50 16 36 H 0.08 1.53 7.29 -51.93 -0.38 1.15 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.39 6.81 -51.93 -0.35 1.03 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 305.19 15.07 4.60 4.60 Total: -1.00 -25.25 305.19 -7.56 -32.81 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.42 Total: 8.46 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.68 Total: -5.77 kcal Atomic # 7 Polarization: -30.07 SS G_CDS: 0.24 Total: -29.83 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.34 Total: -23.69 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -4.96 Total: 13.41 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -25.25 -7.56 -32.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705257457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.468 kcal (2) G-P(sol) polarization free energy of solvation -25.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds