Wall clock time and date at job start Mon Mar 30 2020 05:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.57049 * 2 1 4 4 C 1.54806 * 110.55021 * 122.83561 * 2 1 3 5 5 O 1.44427 * 104.79887 * 142.65929 * 4 2 1 6 6 C 1.44415 * 105.27881 * 319.41546 * 5 4 2 7 7 C 1.54475 * 104.80572 * 40.51137 * 6 5 4 8 8 H 1.08997 * 110.51307 * 94.80342 * 7 6 5 9 9 C 1.50699 * 110.51309 * 217.37676 * 7 6 5 10 10 O 1.21292 * 119.99760 * 49.95833 * 9 7 6 11 11 N 1.34780 * 120.00132 * 229.95926 * 9 7 6 12 12 C 1.37093 * 120.00002 * 359.97438 * 11 9 7 13 13 H 1.08002 * 120.00057 * 127.71335 * 12 11 9 14 14 C 1.38950 * 120.00214 * 307.71604 * 12 11 9 15 15 N 1.31417 * 119.99756 * 338.80508 * 14 12 11 16 16 Si 1.86798 * 120.00355 * 158.81300 * 14 12 11 17 17 H 1.48499 * 109.46766 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47235 * 119.99498 * 16 14 12 19 19 H 1.48505 * 109.46933 * 239.99673 * 16 14 12 20 20 C 1.46504 * 119.99899 * 180.02562 * 11 9 7 21 21 C 1.54259 * 110.07657 * 120.22861 * 20 11 9 22 22 C 1.54893 * 104.19458 * 95.69507 * 21 20 11 23 23 C 1.54881 * 102.75209 * 37.94148 * 22 21 20 24 24 C 1.53882 * 110.02906 * 237.42216 * 20 11 9 25 25 H 1.08987 * 109.47591 * 187.81128 * 1 2 3 26 26 H 1.09004 * 109.47018 * 307.82077 * 1 2 3 27 27 H 1.09000 * 109.46720 * 67.80998 * 1 2 3 28 28 H 1.09001 * 110.43687 * 23.80317 * 4 2 1 29 29 H 1.08995 * 110.39949 * 261.51143 * 4 2 1 30 30 H 1.08995 * 110.37581 * 281.67941 * 6 5 4 31 31 H 1.09009 * 110.46818 * 159.38957 * 6 5 4 32 32 H 0.96995 * 119.99939 * 175.47384 * 15 14 12 33 33 H 1.09004 * 110.01771 * 358.80727 * 20 11 9 34 34 H 1.09001 * 110.48842 * 214.37030 * 21 20 11 35 35 H 1.09001 * 110.48806 * 337.01829 * 21 20 11 36 36 H 1.09006 * 110.75521 * 279.62458 * 22 21 20 37 37 H 1.09001 * 110.91446 * 156.33115 * 22 21 20 38 38 H 1.08997 * 110.48951 * 203.37958 * 23 22 21 39 39 H 1.09002 * 110.48507 * 80.73322 * 23 22 21 40 40 H 1.09000 * 110.03124 * 359.94823 * 24 20 11 41 41 H 1.08995 * 110.03203 * 121.37933 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9130 1.0205 0.0000 4 6 2.0734 -0.7860 1.2180 5 8 3.2425 -1.4736 0.7215 6 6 2.8779 -1.9424 -0.5949 7 6 2.0714 -0.7815 -1.2180 8 1 2.7201 -0.1465 -1.8214 9 6 0.9345 -1.3154 -2.0506 10 8 0.1837 -2.1485 -1.5886 11 7 0.7520 -0.8673 -3.3085 12 6 1.6003 0.0747 -3.8305 13 1 2.0804 -0.0991 -4.7822 14 6 1.8426 1.2530 -3.1350 15 7 0.9890 1.6665 -2.2254 16 14 3.3815 2.2494 -3.4931 17 1 4.1737 1.5733 -4.5517 18 1 2.9959 3.6073 -3.9540 19 1 4.1986 2.3593 -2.2580 20 6 -0.3537 -1.3860 -4.1177 21 6 -1.2927 -0.2343 -4.5317 22 6 -0.8033 0.1651 -5.9459 23 6 -0.4388 -1.2002 -6.5799 24 6 0.1892 -2.0003 -5.4200 25 1 -0.3634 -1.0180 0.1396 26 1 -0.3633 0.6302 0.8118 27 1 -0.3633 0.3881 -0.9516 28 1 1.3320 -1.5035 1.5695 29 1 2.3480 -0.1012 2.0203 30 1 2.2598 -2.8371 -0.5214 31 1 3.7698 -2.1458 -1.1877 32 1 1.1895 2.4528 -1.6941 33 1 -0.9087 -2.1361 -3.5542 34 1 -2.3260 -0.5792 -4.5690 35 1 -1.1941 0.6047 -3.8428 36 1 0.0743 0.8087 -5.8836 37 1 -1.5986 0.6527 -6.5097 38 1 0.2829 -1.0662 -7.3856 39 1 -1.3342 -1.7011 -6.9478 40 1 1.2752 -1.9116 -5.4503 41 1 -0.1023 -3.0483 -5.4883 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705257457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:53 Heat of formation + Delta-G solvation = -96.422438 kcal Electronic energy + Delta-G solvation = -22755.881729 eV Core-core repulsion = 19634.996859 eV Total energy + Delta-G solvation = -3120.884870 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.51450 -39.76338 -38.05349 -35.89982 -34.20734 -32.99567 -30.92136 -29.40808 -28.66455 -26.99292 -26.49588 -24.28112 -22.49810 -21.38863 -20.94015 -20.37091 -18.33853 -17.72626 -17.23660 -16.91079 -16.34181 -16.16607 -16.03439 -15.78416 -15.36876 -14.95150 -14.53275 -14.19534 -13.92680 -13.48311 -13.23050 -13.04465 -12.98899 -12.80450 -12.46241 -12.30394 -12.15571 -11.99508 -11.84990 -11.80365 -11.73596 -11.62752 -11.46110 -11.39210 -11.20838 -10.86857 -10.47889 -10.07240 -9.15261 -8.17415 -6.01629 1.42568 1.52314 1.58649 2.15990 2.36311 2.93265 3.06457 3.16085 3.83857 3.90184 3.96328 4.03335 4.16197 4.19914 4.35816 4.42891 4.63417 4.68177 4.69093 4.76542 4.81545 4.84024 4.87740 4.91122 4.92671 4.96557 5.13852 5.17160 5.19585 5.23411 5.27311 5.45657 5.50941 5.53979 5.55252 5.69060 5.76446 5.86371 6.22220 6.81159 7.10843 7.75906 8.19855 8.81407 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018299 B = 0.009617 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.799220 B = 2910.790787 C = 3642.379200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 H 0.073 0.927 4 C 0.047 3.953 5 O -0.388 6.388 6 C 0.059 3.941 7 C -0.121 4.121 8 H 0.099 0.901 9 C 0.517 3.483 10 O -0.634 6.634 11 N -0.446 5.446 12 C -0.347 4.347 13 H 0.080 0.920 14 C 0.034 3.966 15 N -0.858 5.858 16 Si 0.942 3.058 17 H -0.262 1.262 18 H -0.284 1.284 19 H -0.278 1.278 20 C 0.121 3.879 21 C -0.115 4.115 22 C -0.109 4.109 23 C -0.107 4.107 24 C -0.122 4.122 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.110 0.890 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.269 0.731 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -0.976 -2.380 2.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.096 4.096 3 H 0.091 0.909 4 C -0.029 4.029 5 O -0.307 6.307 6 C -0.018 4.018 7 C -0.142 4.142 8 H 0.117 0.883 9 C 0.308 3.692 10 O -0.523 6.523 11 N -0.164 5.164 12 C -0.475 4.475 13 H 0.097 0.903 14 C -0.172 4.172 15 N -0.493 5.493 16 Si 0.767 3.233 17 H -0.186 1.186 18 H -0.210 1.210 19 H -0.204 1.204 20 C 0.017 3.983 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.160 4.160 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.128 0.872 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.325 -1.222 -2.010 2.374 hybrid contribution 0.352 0.832 -0.051 0.905 sum 0.677 -0.390 -2.061 2.204 Atomic orbital electron populations 1.21815 0.94367 1.00195 1.02312 1.22026 0.96837 0.98588 0.92144 0.90902 1.23768 0.87315 0.95083 0.96760 1.88981 1.36219 1.74401 1.31125 1.23370 0.99145 0.95687 0.83567 1.22466 0.97065 0.97657 0.97014 0.88329 1.20135 0.85616 0.80398 0.83096 1.90447 1.50383 1.38270 1.73205 1.43562 1.25167 1.36166 1.11508 1.19141 1.23299 0.96660 1.08365 0.90271 1.25910 0.98630 0.96063 0.96632 1.70080 1.32597 1.23788 1.22813 0.85680 0.80396 0.78521 0.78722 1.18611 1.21042 1.20364 1.21745 0.88935 0.95290 0.92305 1.22429 0.97274 0.97746 0.97889 1.22348 1.00482 0.97378 0.94398 1.22244 1.00491 0.95175 0.96590 1.22376 1.00612 0.98893 0.94128 0.93952 0.93242 0.91613 0.92427 0.87223 0.92877 0.87927 0.92118 0.92750 0.91851 0.93524 0.92475 0.91119 0.91020 0.90484 0.92334 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.59 7.68 71.98 0.55 -5.04 16 2 C -0.08 -3.15 2.67 -9.66 -0.03 -3.17 16 3 H 0.07 3.03 7.51 -2.39 -0.02 3.01 16 4 C 0.05 1.69 7.19 72.60 0.52 2.21 16 5 O -0.39 -15.08 11.65 -148.98 -1.74 -16.82 16 6 C 0.06 2.38 7.14 72.48 0.52 2.90 16 7 C -0.12 -5.34 2.33 -10.53 -0.02 -5.37 16 8 H 0.10 4.56 4.67 -2.39 -0.01 4.55 16 9 C 0.52 25.16 4.38 87.66 0.38 25.55 16 10 O -0.63 -33.44 13.55 -3.07 -0.04 -33.48 16 11 N -0.45 -20.95 2.31 -609.36 -1.41 -22.36 16 12 C -0.35 -16.10 6.22 84.04 0.52 -15.57 16 13 H 0.08 3.67 7.13 -2.91 -0.02 3.65 16 14 C 0.03 1.57 3.13 84.93 0.27 1.84 16 15 N -0.86 -40.78 8.77 21.66 0.19 -40.59 16 16 Si 0.94 37.32 29.15 68.60 2.00 39.32 16 17 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 18 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 20 C 0.12 5.14 3.35 45.72 0.15 5.30 16 21 C -0.12 -4.53 6.12 31.67 0.19 -4.34 16 22 C -0.11 -3.63 6.56 31.88 0.21 -3.42 16 23 C -0.11 -3.14 6.83 31.67 0.22 -2.92 16 24 C -0.12 -4.28 6.24 31.32 0.20 -4.09 16 25 H 0.04 1.94 6.30 -2.39 -0.02 1.92 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.07 3.26 5.49 -2.39 -0.01 3.25 16 28 H 0.06 2.05 7.75 -2.39 -0.02 2.03 16 29 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.05 2.23 7.34 -2.39 -0.02 2.21 16 31 H 0.10 3.66 8.14 -2.38 -0.02 3.64 16 32 H 0.27 12.31 8.22 -92.71 -0.76 11.55 16 33 H 0.05 2.51 6.94 -2.38 -0.02 2.49 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.05 2.18 8.02 -2.39 -0.02 2.16 16 36 H 0.06 2.16 7.29 -2.38 -0.02 2.15 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 2.21 6.81 -2.39 -0.02 2.19 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -54.31 305.19 3.71 -50.61 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 1.02 Total: 29.47 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 3.68 Total: -6.14 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -1.22 Total: -62.95 kcal Atomic # 8 Polarization: -48.52 SS G_CDS: -1.78 Total: -50.30 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.00 Total: 39.32 kcal Total: -54.31 3.71 -50.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705257457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.816 kcal (2) G-P(sol) polarization free energy of solvation -54.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds