Wall clock time and date at job start Mon Mar 30 2020 05:07:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 110.56583 * 2 1
4 4 C 1.54490 * 110.50800 * 237.32514 * 2 1 3
5 5 O 1.44422 * 104.80093 * 217.38004 * 4 2 1
6 6 C 1.44430 * 105.27701 * 40.50895 * 5 4 2
7 7 C 1.54475 * 104.80107 * 319.48740 * 6 5 4
8 8 H 1.09002 * 110.50750 * 142.75879 * 7 6 5
9 9 C 1.50694 * 110.51617 * 265.33104 * 7 6 5
10 10 O 1.21298 * 120.00179 * 110.89822 * 9 7 6
11 11 N 1.34782 * 120.00097 * 290.90447 * 9 7 6
12 12 C 1.37097 * 119.99811 * 354.49270 * 11 9 7
13 13 H 1.08001 * 120.00403 * 127.06973 * 12 11 9
14 14 C 1.38947 * 119.99717 * 307.06735 * 12 11 9
15 15 N 1.31411 * 120.00143 * 156.67847 * 14 12 11
16 16 Si 1.86803 * 120.00269 * 336.67242 * 14 12 11
17 17 H 1.48502 * 109.46855 * 84.89377 * 16 14 12
18 18 H 1.48499 * 109.47453 * 204.89152 * 16 14 12
19 19 H 1.48493 * 109.46966 * 324.89547 * 16 14 12
20 20 C 1.46503 * 119.99999 * 174.48937 * 11 9 7
21 21 C 1.54272 * 110.03134 * 237.90936 * 20 11 9
22 22 C 1.54960 * 104.15914 * 217.13608 * 21 20 11
23 23 C 1.54899 * 102.77716 * 37.89000 * 22 21 20
24 24 C 1.53870 * 110.03282 * 120.69378 * 20 11 9
25 25 H 1.08999 * 109.47233 * 297.32295 * 1 2 3
26 26 H 1.09009 * 109.46890 * 57.31335 * 1 2 3
27 27 H 1.08997 * 109.47527 * 177.31492 * 1 2 3
28 28 H 1.08998 * 110.37005 * 98.54734 * 4 2 1
29 29 H 1.08997 * 110.46444 * 336.25495 * 4 2 1
30 30 H 1.09002 * 110.37216 * 200.65582 * 6 5 4
31 31 H 1.08999 * 110.36650 * 78.32180 * 6 5 4
32 32 H 0.97003 * 120.00589 * 180.02562 * 15 14 12
33 33 H 1.08995 * 110.01663 * 359.29601 * 20 11 9
34 34 H 1.09003 * 110.48629 * 335.78141 * 21 20 11
35 35 H 1.08995 * 110.48494 * 98.42291 * 21 20 11
36 36 H 1.09001 * 110.71995 * 279.57328 * 22 21 20
37 37 H 1.09000 * 110.92203 * 156.29496 * 22 21 20
38 38 H 1.09001 * 110.48062 * 203.40736 * 23 22 21
39 39 H 1.09000 * 110.60119 * 80.81660 * 23 22 21
40 40 H 1.08999 * 110.03059 * 238.57405 * 24 20 11
41 41 H 1.09007 * 110.03089 * 359.94794 * 24 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9129 1.0205 0.0000
4 6 2.0712 -0.7812 -1.2180
5 8 3.2397 -1.4714 -0.7240
6 6 2.8756 -1.9423 0.5919
7 6 2.0714 -0.7814 1.2179
8 1 1.2505 -1.1678 1.8221
9 6 2.9708 0.0954 2.0505
10 8 3.2288 1.2222 1.6830
11 7 3.4886 -0.3725 3.2036
12 6 3.1089 -1.6020 3.6764
13 1 3.8576 -2.3388 3.9276
14 6 1.7609 -1.9003 3.8326
15 7 1.3606 -3.1519 3.8331
16 14 0.5174 -0.5221 4.0419
17 1 0.1074 -0.0183 2.7065
18 1 -0.6740 -1.0357 4.7643
19 1 1.1304 0.5834 4.8212
20 6 4.4572 0.4329 3.9516
21 6 5.7724 -0.3535 4.1302
22 6 6.2535 0.0304 5.5523
23 6 4.9300 0.1024 6.3539
24 6 3.9220 0.7230 5.3647
25 1 -0.3634 0.4717 0.9130
26 1 -0.3633 0.5550 -0.8650
27 1 -0.3634 -1.0265 -0.0481
28 1 2.3464 -0.0937 -2.0179
29 1 1.3292 -1.4968 -1.5721
30 1 3.7687 -2.1469 1.1823
31 1 2.2562 -2.8361 0.5170
32 1 0.4194 -3.3602 3.9417
33 1 4.6499 1.3681 3.4259
34 1 5.5873 -1.4258 4.0668
35 1 6.5046 -0.0470 3.3832
36 1 6.7522 0.9996 5.5422
37 1 6.9113 -0.7366 5.9610
38 1 5.0484 0.7413 7.2290
39 1 4.6073 -0.8952 6.6518
40 1 3.8556 1.7991 5.5251
41 1 2.9411 0.2654 5.4937
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000705257462.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:07:59
Heat of formation + Delta-G solvation = -82.729245 kcal
Electronic energy + Delta-G solvation = -22519.948432 eV
Core-core repulsion = 19399.657343 eV
Total energy + Delta-G solvation = -3120.291089 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-39.94272 -38.28838 -36.57791 -34.25391 -32.96997 -31.84054 -29.49332 -28.09509
-27.03173 -25.80194 -24.65070 -22.89976 -20.83484 -20.22195 -19.31145 -18.90935
-17.25842 -15.92285 -15.85920 -15.39822 -15.01355 -14.68038 -14.45568 -14.08944
-13.77043 -13.47122 -13.11211 -12.75826 -12.56090 -12.37509 -12.07486 -11.75136
-11.61255 -11.24401 -11.13731 -10.88664 -10.71435 -10.58851 -10.52770 -10.30751
-10.18892 -10.09646 -9.99465 -9.75613 -9.63585 -9.28799 -8.98745 -8.52161
-7.56531 -6.58000 -4.28108 3.03717 3.16021 3.24358 3.66269 4.05173
4.34665 4.60333 4.79493 5.12295 5.22279 5.28321 5.36064 5.48677
5.51876 5.79388 5.84130 5.90847 6.00275 6.03359 6.05441 6.14802
6.15461 6.20499 6.25609 6.27404 6.40538 6.43659 6.44283 6.45829
6.52026 6.61646 6.75373 6.82315 6.86121 6.94308 7.04750 7.39857
7.62271 7.77447 8.43743 8.92621 9.25245 9.70035 10.51075
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.019663 B = 0.009146 C = 0.007832
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1423.624139 B = 3060.698872 C = 3574.202028
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.125 4.125
3 H 0.102 0.898
4 C 0.053 3.947
5 O -0.383 6.383
6 C 0.076 3.924
7 C -0.126 4.126
8 H 0.111 0.889
9 C 0.499 3.501
10 O -0.591 6.591
11 N -0.463 5.463
12 C -0.342 4.342
13 H 0.100 0.900
14 C 0.081 3.919
15 N -0.850 5.850
16 Si 0.832 3.168
17 H -0.253 1.253
18 H -0.285 1.285
19 H -0.257 1.257
20 C 0.129 3.871
21 C -0.127 4.127
22 C -0.120 4.120
23 C -0.116 4.116
24 C -0.132 4.132
25 H 0.059 0.941
26 H 0.053 0.947
27 H 0.054 0.946
28 H 0.083 0.917
29 H 0.053 0.947
30 H 0.104 0.896
31 H 0.063 0.937
32 H 0.276 0.724
33 H 0.081 0.919
34 H 0.081 0.919
35 H 0.055 0.945
36 H 0.058 0.942
37 H 0.060 0.940
38 H 0.053 0.947
39 H 0.068 0.932
40 H 0.050 0.950
41 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.985 2.930 -1.393 3.391
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.144 4.144
3 H 0.120 0.880
4 C -0.024 4.024
5 O -0.302 6.302
6 C -0.001 4.001
7 C -0.147 4.147
8 H 0.128 0.872
9 C 0.289 3.711
10 O -0.475 6.475
11 N -0.184 5.184
12 C -0.469 4.469
13 H 0.117 0.883
14 C -0.128 4.128
15 N -0.484 5.484
16 Si 0.657 3.343
17 H -0.179 1.179
18 H -0.211 1.211
19 H -0.181 1.181
20 C 0.025 3.975
21 C -0.165 4.165
22 C -0.158 4.158
23 C -0.154 4.154
24 C -0.170 4.170
25 H 0.078 0.922
26 H 0.073 0.927
27 H 0.073 0.927
28 H 0.101 0.899
29 H 0.071 0.929
30 H 0.122 0.878
31 H 0.081 0.919
32 H 0.086 0.914
33 H 0.099 0.901
34 H 0.100 0.900
35 H 0.074 0.926
36 H 0.077 0.923
37 H 0.078 0.922
38 H 0.071 0.929
39 H 0.087 0.913
40 H 0.069 0.931
41 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 1.181 3.293 -1.636 3.863
hybrid contribution -1.174 0.528 0.585 1.414
sum 0.007 3.822 -1.051 3.964
Atomic orbital electron populations
1.21867 0.94850 1.01612 1.01720 1.22600 0.95737 1.02200 0.93878
0.88002 1.23410 0.88106 0.94561 0.96328 1.89067 1.35242 1.73813
1.32036 1.23171 1.00419 0.94538 0.81948 1.22629 0.99445 0.96214
0.96404 0.87174 1.20370 0.82344 0.87135 0.81263 1.90487 1.64085
1.20729 1.72228 1.43767 1.39406 1.17405 1.17842 1.18774 0.92255
0.88868 1.47025 0.88253 1.25555 0.97354 0.95595 0.94250 1.69762
1.17105 1.17645 1.43927 0.87820 0.81857 0.84110 0.80496 1.17878
1.21052 1.18104 1.21682 0.89178 0.94658 0.91947 1.22646 0.96134
1.02072 0.95672 1.22428 0.97016 1.00353 0.96030 1.22259 0.95063
1.00966 0.97107 1.22497 1.00687 0.99129 0.94698 0.92192 0.92748
0.92715 0.89899 0.92867 0.87784 0.91876 0.91386 0.90090 0.90012
0.92607 0.92319 0.92163 0.92871 0.91296 0.93094 0.90146
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.37 8.82 37.16 0.33 -2.04 16
2 C -0.13 -2.40 3.30 -89.05 -0.29 -2.70 16
3 H 0.10 2.12 6.51 -51.93 -0.34 1.79 16
4 C 0.05 0.92 7.18 37.94 0.27 1.19 16
5 O -0.38 -7.83 11.65 -35.23 -0.41 -8.24 16
6 C 0.08 1.60 6.71 37.93 0.25 1.85 16
7 C -0.13 -2.75 1.61 -90.21 -0.15 -2.90 16
8 H 0.11 2.51 3.07 -51.93 -0.16 2.35 16
9 C 0.50 12.01 5.29 -10.99 -0.06 11.95 16
10 O -0.59 -15.27 14.65 5.54 0.08 -15.19 16
11 N -0.46 -10.75 1.84 -106.54 -0.20 -10.95 16
12 C -0.34 -8.25 6.53 -14.93 -0.10 -8.35 16
13 H 0.10 2.55 6.90 -52.49 -0.36 2.18 16
14 C 0.08 1.98 3.97 -17.47 -0.07 1.91 16
15 N -0.85 -21.64 13.96 55.50 0.77 -20.87 16
16 Si 0.83 19.19 24.26 -169.99 -4.12 15.07 16
17 H -0.25 -5.67 4.26 56.52 0.24 -5.43 16
18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
19 H -0.26 -6.07 5.90 56.52 0.33 -5.74 16
20 C 0.13 2.69 3.29 -66.81 -0.22 2.47 16
21 C -0.13 -2.29 6.42 -25.03 -0.16 -2.46 16
22 C -0.12 -1.83 6.91 -24.69 -0.17 -2.00 16
23 C -0.12 -1.89 6.83 -25.07 -0.17 -2.07 16
24 C -0.13 -2.55 6.27 -25.62 -0.16 -2.71 16
25 H 0.06 1.07 6.41 -51.93 -0.33 0.73 16
26 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16
27 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16
28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16
29 H 0.05 0.81 7.83 -51.93 -0.41 0.41 16
30 H 0.10 2.32 7.07 -51.93 -0.37 1.95 16
31 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16
32 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16
33 H 0.08 1.77 6.96 -51.93 -0.36 1.41 16
34 H 0.08 1.59 6.38 -51.93 -0.33 1.26 16
35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16
38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
41 H 0.08 1.76 4.88 -51.92 -0.25 1.50 16
LS Contribution 302.45 15.07 4.56 4.56
Total: -1.00 -26.99 302.45 -6.51 -33.50
By element:
Atomic # 1 Polarization: 14.46 SS G_CDS: -6.50 Total: 7.96 kcal
Atomic # 6 Polarization: -5.15 SS G_CDS: -0.69 Total: -5.84 kcal
Atomic # 7 Polarization: -32.39 SS G_CDS: 0.58 Total: -31.81 kcal
Atomic # 8 Polarization: -23.10 SS G_CDS: -0.33 Total: -23.43 kcal
Atomic # 14 Polarization: 19.19 SS G_CDS: -4.12 Total: 15.07 kcal
Total LS contribution 4.56 Total: 4.56 kcal
Total: -26.99 -6.51 -33.50 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000705257462.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.227 kcal
(2) G-P(sol) polarization free energy of solvation -26.992 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.220 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.502 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.729 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds