Wall clock time and date at job start Mon Mar 30 2020 05:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.56583 * 2 1 4 4 C 1.54490 * 110.50800 * 237.32514 * 2 1 3 5 5 O 1.44422 * 104.80093 * 217.38004 * 4 2 1 6 6 C 1.44430 * 105.27701 * 40.50895 * 5 4 2 7 7 C 1.54475 * 104.80107 * 319.48740 * 6 5 4 8 8 H 1.09002 * 110.50750 * 142.75879 * 7 6 5 9 9 C 1.50694 * 110.51617 * 265.33104 * 7 6 5 10 10 O 1.21298 * 120.00179 * 110.89822 * 9 7 6 11 11 N 1.34782 * 120.00097 * 290.90447 * 9 7 6 12 12 C 1.37097 * 119.99811 * 354.49270 * 11 9 7 13 13 H 1.08001 * 120.00403 * 127.06973 * 12 11 9 14 14 C 1.38947 * 119.99717 * 307.06735 * 12 11 9 15 15 N 1.31411 * 120.00143 * 156.67847 * 14 12 11 16 16 Si 1.86803 * 120.00269 * 336.67242 * 14 12 11 17 17 H 1.48502 * 109.46855 * 84.89377 * 16 14 12 18 18 H 1.48499 * 109.47453 * 204.89152 * 16 14 12 19 19 H 1.48493 * 109.46966 * 324.89547 * 16 14 12 20 20 C 1.46503 * 119.99999 * 174.48937 * 11 9 7 21 21 C 1.54272 * 110.03134 * 237.90936 * 20 11 9 22 22 C 1.54960 * 104.15914 * 217.13608 * 21 20 11 23 23 C 1.54899 * 102.77716 * 37.89000 * 22 21 20 24 24 C 1.53870 * 110.03282 * 120.69378 * 20 11 9 25 25 H 1.08999 * 109.47233 * 297.32295 * 1 2 3 26 26 H 1.09009 * 109.46890 * 57.31335 * 1 2 3 27 27 H 1.08997 * 109.47527 * 177.31492 * 1 2 3 28 28 H 1.08998 * 110.37005 * 98.54734 * 4 2 1 29 29 H 1.08997 * 110.46444 * 336.25495 * 4 2 1 30 30 H 1.09002 * 110.37216 * 200.65582 * 6 5 4 31 31 H 1.08999 * 110.36650 * 78.32180 * 6 5 4 32 32 H 0.97003 * 120.00589 * 180.02562 * 15 14 12 33 33 H 1.08995 * 110.01663 * 359.29601 * 20 11 9 34 34 H 1.09003 * 110.48629 * 335.78141 * 21 20 11 35 35 H 1.08995 * 110.48494 * 98.42291 * 21 20 11 36 36 H 1.09001 * 110.71995 * 279.57328 * 22 21 20 37 37 H 1.09000 * 110.92203 * 156.29496 * 22 21 20 38 38 H 1.09001 * 110.48062 * 203.40736 * 23 22 21 39 39 H 1.09000 * 110.60119 * 80.81660 * 23 22 21 40 40 H 1.08999 * 110.03059 * 238.57405 * 24 20 11 41 41 H 1.09007 * 110.03089 * 359.94794 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0712 -0.7812 -1.2180 5 8 3.2397 -1.4714 -0.7240 6 6 2.8756 -1.9423 0.5919 7 6 2.0714 -0.7814 1.2179 8 1 1.2505 -1.1678 1.8221 9 6 2.9708 0.0954 2.0505 10 8 3.2288 1.2222 1.6830 11 7 3.4886 -0.3725 3.2036 12 6 3.1089 -1.6020 3.6764 13 1 3.8576 -2.3388 3.9276 14 6 1.7609 -1.9003 3.8326 15 7 1.3606 -3.1519 3.8331 16 14 0.5174 -0.5221 4.0419 17 1 0.1074 -0.0183 2.7065 18 1 -0.6740 -1.0357 4.7643 19 1 1.1304 0.5834 4.8212 20 6 4.4572 0.4329 3.9516 21 6 5.7724 -0.3535 4.1302 22 6 6.2535 0.0304 5.5523 23 6 4.9300 0.1024 6.3539 24 6 3.9220 0.7230 5.3647 25 1 -0.3634 0.4717 0.9130 26 1 -0.3633 0.5550 -0.8650 27 1 -0.3634 -1.0265 -0.0481 28 1 2.3464 -0.0937 -2.0179 29 1 1.3292 -1.4968 -1.5721 30 1 3.7687 -2.1469 1.1823 31 1 2.2562 -2.8361 0.5170 32 1 0.4194 -3.3602 3.9417 33 1 4.6499 1.3681 3.4259 34 1 5.5873 -1.4258 4.0668 35 1 6.5046 -0.0470 3.3832 36 1 6.7522 0.9996 5.5422 37 1 6.9113 -0.7366 5.9610 38 1 5.0484 0.7413 7.2290 39 1 4.6073 -0.8952 6.6518 40 1 3.8556 1.7991 5.5251 41 1 2.9411 0.2654 5.4937 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705257462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:59 Heat of formation + Delta-G solvation = -82.729245 kcal Electronic energy + Delta-G solvation = -22519.948432 eV Core-core repulsion = 19399.657343 eV Total energy + Delta-G solvation = -3120.291089 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.94272 -38.28838 -36.57791 -34.25391 -32.96997 -31.84054 -29.49332 -28.09509 -27.03173 -25.80194 -24.65070 -22.89976 -20.83484 -20.22195 -19.31145 -18.90935 -17.25842 -15.92285 -15.85920 -15.39822 -15.01355 -14.68038 -14.45568 -14.08944 -13.77043 -13.47122 -13.11211 -12.75826 -12.56090 -12.37509 -12.07486 -11.75136 -11.61255 -11.24401 -11.13731 -10.88664 -10.71435 -10.58851 -10.52770 -10.30751 -10.18892 -10.09646 -9.99465 -9.75613 -9.63585 -9.28799 -8.98745 -8.52161 -7.56531 -6.58000 -4.28108 3.03717 3.16021 3.24358 3.66269 4.05173 4.34665 4.60333 4.79493 5.12295 5.22279 5.28321 5.36064 5.48677 5.51876 5.79388 5.84130 5.90847 6.00275 6.03359 6.05441 6.14802 6.15461 6.20499 6.25609 6.27404 6.40538 6.43659 6.44283 6.45829 6.52026 6.61646 6.75373 6.82315 6.86121 6.94308 7.04750 7.39857 7.62271 7.77447 8.43743 8.92621 9.25245 9.70035 10.51075 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.009146 C = 0.007832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.624139 B = 3060.698872 C = 3574.202028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 H 0.102 0.898 4 C 0.053 3.947 5 O -0.383 6.383 6 C 0.076 3.924 7 C -0.126 4.126 8 H 0.111 0.889 9 C 0.499 3.501 10 O -0.591 6.591 11 N -0.463 5.463 12 C -0.342 4.342 13 H 0.100 0.900 14 C 0.081 3.919 15 N -0.850 5.850 16 Si 0.832 3.168 17 H -0.253 1.253 18 H -0.285 1.285 19 H -0.257 1.257 20 C 0.129 3.871 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.132 4.132 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.276 0.724 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 2.930 -1.393 3.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.144 4.144 3 H 0.120 0.880 4 C -0.024 4.024 5 O -0.302 6.302 6 C -0.001 4.001 7 C -0.147 4.147 8 H 0.128 0.872 9 C 0.289 3.711 10 O -0.475 6.475 11 N -0.184 5.184 12 C -0.469 4.469 13 H 0.117 0.883 14 C -0.128 4.128 15 N -0.484 5.484 16 Si 0.657 3.343 17 H -0.179 1.179 18 H -0.211 1.211 19 H -0.181 1.181 20 C 0.025 3.975 21 C -0.165 4.165 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.170 4.170 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.181 3.293 -1.636 3.863 hybrid contribution -1.174 0.528 0.585 1.414 sum 0.007 3.822 -1.051 3.964 Atomic orbital electron populations 1.21867 0.94850 1.01612 1.01720 1.22600 0.95737 1.02200 0.93878 0.88002 1.23410 0.88106 0.94561 0.96328 1.89067 1.35242 1.73813 1.32036 1.23171 1.00419 0.94538 0.81948 1.22629 0.99445 0.96214 0.96404 0.87174 1.20370 0.82344 0.87135 0.81263 1.90487 1.64085 1.20729 1.72228 1.43767 1.39406 1.17405 1.17842 1.18774 0.92255 0.88868 1.47025 0.88253 1.25555 0.97354 0.95595 0.94250 1.69762 1.17105 1.17645 1.43927 0.87820 0.81857 0.84110 0.80496 1.17878 1.21052 1.18104 1.21682 0.89178 0.94658 0.91947 1.22646 0.96134 1.02072 0.95672 1.22428 0.97016 1.00353 0.96030 1.22259 0.95063 1.00966 0.97107 1.22497 1.00687 0.99129 0.94698 0.92192 0.92748 0.92715 0.89899 0.92867 0.87784 0.91876 0.91386 0.90090 0.90012 0.92607 0.92319 0.92163 0.92871 0.91296 0.93094 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.82 37.16 0.33 -2.04 16 2 C -0.13 -2.40 3.30 -89.05 -0.29 -2.70 16 3 H 0.10 2.12 6.51 -51.93 -0.34 1.79 16 4 C 0.05 0.92 7.18 37.94 0.27 1.19 16 5 O -0.38 -7.83 11.65 -35.23 -0.41 -8.24 16 6 C 0.08 1.60 6.71 37.93 0.25 1.85 16 7 C -0.13 -2.75 1.61 -90.21 -0.15 -2.90 16 8 H 0.11 2.51 3.07 -51.93 -0.16 2.35 16 9 C 0.50 12.01 5.29 -10.99 -0.06 11.95 16 10 O -0.59 -15.27 14.65 5.54 0.08 -15.19 16 11 N -0.46 -10.75 1.84 -106.54 -0.20 -10.95 16 12 C -0.34 -8.25 6.53 -14.93 -0.10 -8.35 16 13 H 0.10 2.55 6.90 -52.49 -0.36 2.18 16 14 C 0.08 1.98 3.97 -17.47 -0.07 1.91 16 15 N -0.85 -21.64 13.96 55.50 0.77 -20.87 16 16 Si 0.83 19.19 24.26 -169.99 -4.12 15.07 16 17 H -0.25 -5.67 4.26 56.52 0.24 -5.43 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.26 -6.07 5.90 56.52 0.33 -5.74 16 20 C 0.13 2.69 3.29 -66.81 -0.22 2.47 16 21 C -0.13 -2.29 6.42 -25.03 -0.16 -2.46 16 22 C -0.12 -1.83 6.91 -24.69 -0.17 -2.00 16 23 C -0.12 -1.89 6.83 -25.07 -0.17 -2.07 16 24 C -0.13 -2.55 6.27 -25.62 -0.16 -2.71 16 25 H 0.06 1.07 6.41 -51.93 -0.33 0.73 16 26 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.05 0.81 7.83 -51.93 -0.41 0.41 16 30 H 0.10 2.32 7.07 -51.93 -0.37 1.95 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 33 H 0.08 1.77 6.96 -51.93 -0.36 1.41 16 34 H 0.08 1.59 6.38 -51.93 -0.33 1.26 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.76 4.88 -51.92 -0.25 1.50 16 LS Contribution 302.45 15.07 4.56 4.56 Total: -1.00 -26.99 302.45 -6.51 -33.50 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.50 Total: 7.96 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -0.69 Total: -5.84 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.58 Total: -31.81 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.33 Total: -23.43 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.12 Total: 15.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.99 -6.51 -33.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705257462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.227 kcal (2) G-P(sol) polarization free energy of solvation -26.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds