Wall clock time and date at job start Mon Mar 30 2020 05:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.56583 * 2 1 4 4 C 1.54490 * 110.50800 * 237.32514 * 2 1 3 5 5 O 1.44422 * 104.80093 * 217.38004 * 4 2 1 6 6 C 1.44430 * 105.27701 * 40.50895 * 5 4 2 7 7 C 1.54475 * 104.80107 * 319.48740 * 6 5 4 8 8 H 1.09002 * 110.50750 * 142.75879 * 7 6 5 9 9 C 1.50694 * 110.51617 * 265.33104 * 7 6 5 10 10 O 1.21298 * 120.00179 * 110.89822 * 9 7 6 11 11 N 1.34782 * 120.00097 * 290.90447 * 9 7 6 12 12 C 1.37097 * 119.99811 * 354.49270 * 11 9 7 13 13 H 1.08001 * 120.00403 * 127.06973 * 12 11 9 14 14 C 1.38947 * 119.99717 * 307.06735 * 12 11 9 15 15 N 1.31411 * 120.00143 * 156.67847 * 14 12 11 16 16 Si 1.86803 * 120.00269 * 336.67242 * 14 12 11 17 17 H 1.48502 * 109.46855 * 84.89377 * 16 14 12 18 18 H 1.48499 * 109.47453 * 204.89152 * 16 14 12 19 19 H 1.48493 * 109.46966 * 324.89547 * 16 14 12 20 20 C 1.46503 * 119.99999 * 174.48937 * 11 9 7 21 21 C 1.54272 * 110.03134 * 237.90936 * 20 11 9 22 22 C 1.54960 * 104.15914 * 217.13608 * 21 20 11 23 23 C 1.54899 * 102.77716 * 37.89000 * 22 21 20 24 24 C 1.53870 * 110.03282 * 120.69378 * 20 11 9 25 25 H 1.08999 * 109.47233 * 297.32295 * 1 2 3 26 26 H 1.09009 * 109.46890 * 57.31335 * 1 2 3 27 27 H 1.08997 * 109.47527 * 177.31492 * 1 2 3 28 28 H 1.08998 * 110.37005 * 98.54734 * 4 2 1 29 29 H 1.08997 * 110.46444 * 336.25495 * 4 2 1 30 30 H 1.09002 * 110.37216 * 200.65582 * 6 5 4 31 31 H 1.08999 * 110.36650 * 78.32180 * 6 5 4 32 32 H 0.97003 * 120.00589 * 180.02562 * 15 14 12 33 33 H 1.08995 * 110.01663 * 359.29601 * 20 11 9 34 34 H 1.09003 * 110.48629 * 335.78141 * 21 20 11 35 35 H 1.08995 * 110.48494 * 98.42291 * 21 20 11 36 36 H 1.09001 * 110.71995 * 279.57328 * 22 21 20 37 37 H 1.09000 * 110.92203 * 156.29496 * 22 21 20 38 38 H 1.09001 * 110.48062 * 203.40736 * 23 22 21 39 39 H 1.09000 * 110.60119 * 80.81660 * 23 22 21 40 40 H 1.08999 * 110.03059 * 238.57405 * 24 20 11 41 41 H 1.09007 * 110.03089 * 359.94794 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0712 -0.7812 -1.2180 5 8 3.2397 -1.4714 -0.7240 6 6 2.8756 -1.9423 0.5919 7 6 2.0714 -0.7814 1.2179 8 1 1.2505 -1.1678 1.8221 9 6 2.9708 0.0954 2.0505 10 8 3.2288 1.2222 1.6830 11 7 3.4886 -0.3725 3.2036 12 6 3.1089 -1.6020 3.6764 13 1 3.8576 -2.3388 3.9276 14 6 1.7609 -1.9003 3.8326 15 7 1.3606 -3.1519 3.8331 16 14 0.5174 -0.5221 4.0419 17 1 0.1074 -0.0183 2.7065 18 1 -0.6740 -1.0357 4.7643 19 1 1.1304 0.5834 4.8212 20 6 4.4572 0.4329 3.9516 21 6 5.7724 -0.3535 4.1302 22 6 6.2535 0.0304 5.5523 23 6 4.9300 0.1024 6.3539 24 6 3.9220 0.7230 5.3647 25 1 -0.3634 0.4717 0.9130 26 1 -0.3633 0.5550 -0.8650 27 1 -0.3634 -1.0265 -0.0481 28 1 2.3464 -0.0937 -2.0179 29 1 1.3292 -1.4968 -1.5721 30 1 3.7687 -2.1469 1.1823 31 1 2.2562 -2.8361 0.5170 32 1 0.4194 -3.3602 3.9417 33 1 4.6499 1.3681 3.4259 34 1 5.5873 -1.4258 4.0668 35 1 6.5046 -0.0470 3.3832 36 1 6.7522 0.9996 5.5422 37 1 6.9113 -0.7366 5.9610 38 1 5.0484 0.7413 7.2290 39 1 4.6073 -0.8952 6.6518 40 1 3.8556 1.7991 5.5251 41 1 2.9411 0.2654 5.4937 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705257462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:59 Heat of formation + Delta-G solvation = -98.798352 kcal Electronic energy + Delta-G solvation = -22520.645241 eV Core-core repulsion = 19399.657343 eV Total energy + Delta-G solvation = -3120.987898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67457 -39.87943 -38.24483 -36.08280 -34.49737 -33.72122 -31.09039 -29.55360 -28.61704 -27.19060 -26.53076 -24.57120 -22.40932 -21.62308 -20.94661 -20.64880 -19.04362 -17.64566 -17.57954 -17.01786 -16.67128 -16.21075 -16.04023 -15.80227 -15.51935 -15.11231 -14.78625 -14.25621 -14.11324 -13.98331 -13.75295 -13.24102 -13.22672 -13.06323 -12.80099 -12.47574 -12.22948 -12.16314 -11.87445 -11.84208 -11.76542 -11.73196 -11.41214 -11.40920 -11.27273 -10.95559 -10.80941 -10.35935 -9.43482 -8.53303 -6.23585 1.17204 1.27222 1.35121 1.77922 2.14802 2.59678 2.88024 3.07724 3.58178 3.76996 3.85047 3.90757 4.00321 4.13342 4.18180 4.32695 4.49718 4.52313 4.58770 4.64902 4.67295 4.71243 4.72035 4.80947 4.81614 4.88812 4.91700 5.02122 5.05705 5.12683 5.15229 5.21209 5.32089 5.38113 5.43170 5.54892 5.71911 5.83526 5.93446 6.47616 6.98505 7.35415 7.81274 8.58807 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019663 B = 0.009146 C = 0.007832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.624139 B = 3060.698872 C = 3574.202028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 H 0.082 0.918 4 C 0.053 3.947 5 O -0.398 6.398 6 C 0.085 3.915 7 C -0.131 4.131 8 H 0.101 0.899 9 C 0.487 3.513 10 O -0.615 6.615 11 N -0.465 5.465 12 C -0.332 4.332 13 H 0.081 0.919 14 C 0.065 3.935 15 N -0.874 5.874 16 Si 0.860 3.140 17 H -0.243 1.243 18 H -0.280 1.280 19 H -0.268 1.268 20 C 0.117 3.883 21 C -0.124 4.124 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.133 4.133 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.280 0.720 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.954 3.370 -1.652 3.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 H 0.100 0.900 4 C -0.024 4.024 5 O -0.317 6.317 6 C 0.008 3.992 7 C -0.152 4.152 8 H 0.119 0.881 9 C 0.277 3.723 10 O -0.502 6.502 11 N -0.186 5.186 12 C -0.459 4.459 13 H 0.098 0.902 14 C -0.142 4.142 15 N -0.509 5.509 16 Si 0.685 3.315 17 H -0.168 1.168 18 H -0.206 1.206 19 H -0.193 1.193 20 C 0.014 3.986 21 C -0.162 4.162 22 C -0.146 4.146 23 C -0.148 4.148 24 C -0.171 4.171 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.150 3.727 -1.889 4.334 hybrid contribution -1.118 0.414 0.646 1.355 sum 0.032 4.141 -1.243 4.324 Atomic orbital electron populations 1.21849 0.92668 1.02714 1.02380 1.22624 0.97601 1.00861 0.93428 0.89984 1.23649 0.87670 0.95186 0.95857 1.89043 1.37013 1.74201 1.31447 1.22986 0.99399 0.94597 0.82259 1.22684 0.98825 0.96569 0.97139 0.88128 1.20837 0.82676 0.87198 0.81547 1.90458 1.65196 1.21707 1.72802 1.43883 1.39496 1.17266 1.17910 1.18520 0.91873 0.88942 1.46612 0.90151 1.25743 0.98018 0.96315 0.94097 1.69791 1.17660 1.18481 1.44944 0.87374 0.80850 0.82528 0.80736 1.16848 1.20610 1.19340 1.21930 0.90044 0.94252 0.92375 1.22598 0.94940 1.00397 0.98262 1.22408 0.96749 1.02125 0.93322 1.22234 0.94519 1.00631 0.97432 1.22490 1.00087 0.99893 0.94660 0.93898 0.89454 0.91637 0.87565 0.90110 0.89913 0.91079 0.90952 0.91448 0.91879 0.91942 0.90233 0.90061 0.89958 0.92437 0.91974 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 8.82 71.98 0.64 -3.63 16 2 C -0.13 -4.67 3.30 -9.78 -0.03 -4.71 16 3 H 0.08 3.38 6.51 -2.39 -0.02 3.36 16 4 C 0.05 1.69 7.18 72.49 0.52 2.21 16 5 O -0.40 -15.86 11.65 -148.98 -1.74 -17.60 16 6 C 0.08 3.55 6.71 72.48 0.49 4.04 16 7 C -0.13 -5.72 1.61 -10.53 -0.02 -5.73 16 8 H 0.10 4.57 3.07 -2.39 -0.01 4.56 16 9 C 0.49 23.77 5.29 87.65 0.46 24.23 16 10 O -0.62 -32.30 14.65 -3.08 -0.05 -32.35 16 11 N -0.47 -22.00 1.84 -609.37 -1.12 -23.12 16 12 C -0.33 -16.35 6.53 84.04 0.55 -15.80 16 13 H 0.08 4.26 6.90 -2.91 -0.02 4.24 16 14 C 0.07 3.22 3.97 84.93 0.34 3.56 16 15 N -0.87 -44.63 13.96 21.66 0.30 -44.33 16 16 Si 0.86 39.41 24.26 68.60 1.66 41.07 16 17 H -0.24 -10.73 4.26 99.48 0.42 -10.31 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.27 -12.76 5.90 99.48 0.59 -12.17 16 20 C 0.12 4.92 3.29 45.72 0.15 5.07 16 21 C -0.12 -4.41 6.42 31.70 0.20 -4.21 16 22 C -0.11 -3.02 6.91 31.91 0.22 -2.80 16 23 C -0.11 -3.40 6.83 31.67 0.22 -3.18 16 24 C -0.13 -5.09 6.27 31.32 0.20 -4.90 16 25 H 0.04 1.45 6.41 -2.39 -0.02 1.44 16 26 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.06 1.86 8.09 -2.39 -0.02 1.84 16 28 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 29 H 0.08 2.18 7.83 -2.39 -0.02 2.16 16 30 H 0.08 3.79 7.07 -2.39 -0.02 3.77 16 31 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16 33 H 0.07 2.99 6.96 -2.39 -0.02 2.97 16 34 H 0.06 2.48 6.38 -2.39 -0.02 2.47 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 2.31 4.88 -2.38 -0.01 2.29 16 Total: -1.00 -58.46 302.45 3.61 -54.85 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.62 Total: 27.33 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 3.93 Total: -5.86 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -0.82 Total: -67.45 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -1.78 Total: -49.95 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.66 Total: 41.07 kcal Total: -58.46 3.61 -54.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705257462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.947 kcal (2) G-P(sol) polarization free energy of solvation -58.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds