Wall clock time and date at job start Mon Mar 30 2020 05:07:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 110.56583 * 2 1
4 4 C 1.54490 * 110.50800 * 237.32514 * 2 1 3
5 5 O 1.44422 * 104.80093 * 217.38004 * 4 2 1
6 6 C 1.44430 * 105.27701 * 40.50895 * 5 4 2
7 7 C 1.54475 * 104.80107 * 319.48740 * 6 5 4
8 8 H 1.09002 * 110.50750 * 142.75879 * 7 6 5
9 9 C 1.50694 * 110.51617 * 265.33104 * 7 6 5
10 10 O 1.21298 * 120.00179 * 110.89822 * 9 7 6
11 11 N 1.34782 * 120.00097 * 290.90447 * 9 7 6
12 12 C 1.37097 * 119.99811 * 354.49270 * 11 9 7
13 13 H 1.08001 * 120.00403 * 127.06973 * 12 11 9
14 14 C 1.38947 * 119.99717 * 307.06735 * 12 11 9
15 15 N 1.31411 * 120.00143 * 156.67847 * 14 12 11
16 16 Si 1.86803 * 120.00269 * 336.67242 * 14 12 11
17 17 H 1.48502 * 109.46855 * 84.89377 * 16 14 12
18 18 H 1.48499 * 109.47453 * 204.89152 * 16 14 12
19 19 H 1.48493 * 109.46966 * 324.89547 * 16 14 12
20 20 C 1.46503 * 119.99999 * 174.48937 * 11 9 7
21 21 C 1.54272 * 110.03134 * 237.90936 * 20 11 9
22 22 C 1.54960 * 104.15914 * 217.13608 * 21 20 11
23 23 C 1.54899 * 102.77716 * 37.89000 * 22 21 20
24 24 C 1.53870 * 110.03282 * 120.69378 * 20 11 9
25 25 H 1.08999 * 109.47233 * 297.32295 * 1 2 3
26 26 H 1.09009 * 109.46890 * 57.31335 * 1 2 3
27 27 H 1.08997 * 109.47527 * 177.31492 * 1 2 3
28 28 H 1.08998 * 110.37005 * 98.54734 * 4 2 1
29 29 H 1.08997 * 110.46444 * 336.25495 * 4 2 1
30 30 H 1.09002 * 110.37216 * 200.65582 * 6 5 4
31 31 H 1.08999 * 110.36650 * 78.32180 * 6 5 4
32 32 H 0.97003 * 120.00589 * 180.02562 * 15 14 12
33 33 H 1.08995 * 110.01663 * 359.29601 * 20 11 9
34 34 H 1.09003 * 110.48629 * 335.78141 * 21 20 11
35 35 H 1.08995 * 110.48494 * 98.42291 * 21 20 11
36 36 H 1.09001 * 110.71995 * 279.57328 * 22 21 20
37 37 H 1.09000 * 110.92203 * 156.29496 * 22 21 20
38 38 H 1.09001 * 110.48062 * 203.40736 * 23 22 21
39 39 H 1.09000 * 110.60119 * 80.81660 * 23 22 21
40 40 H 1.08999 * 110.03059 * 238.57405 * 24 20 11
41 41 H 1.09007 * 110.03089 * 359.94794 * 24 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9129 1.0205 0.0000
4 6 2.0712 -0.7812 -1.2180
5 8 3.2397 -1.4714 -0.7240
6 6 2.8756 -1.9423 0.5919
7 6 2.0714 -0.7814 1.2179
8 1 1.2505 -1.1678 1.8221
9 6 2.9708 0.0954 2.0505
10 8 3.2288 1.2222 1.6830
11 7 3.4886 -0.3725 3.2036
12 6 3.1089 -1.6020 3.6764
13 1 3.8576 -2.3388 3.9276
14 6 1.7609 -1.9003 3.8326
15 7 1.3606 -3.1519 3.8331
16 14 0.5174 -0.5221 4.0419
17 1 0.1074 -0.0183 2.7065
18 1 -0.6740 -1.0357 4.7643
19 1 1.1304 0.5834 4.8212
20 6 4.4572 0.4329 3.9516
21 6 5.7724 -0.3535 4.1302
22 6 6.2535 0.0304 5.5523
23 6 4.9300 0.1024 6.3539
24 6 3.9220 0.7230 5.3647
25 1 -0.3634 0.4717 0.9130
26 1 -0.3633 0.5550 -0.8650
27 1 -0.3634 -1.0265 -0.0481
28 1 2.3464 -0.0937 -2.0179
29 1 1.3292 -1.4968 -1.5721
30 1 3.7687 -2.1469 1.1823
31 1 2.2562 -2.8361 0.5170
32 1 0.4194 -3.3602 3.9417
33 1 4.6499 1.3681 3.4259
34 1 5.5873 -1.4258 4.0668
35 1 6.5046 -0.0470 3.3832
36 1 6.7522 0.9996 5.5422
37 1 6.9113 -0.7366 5.9610
38 1 5.0484 0.7413 7.2290
39 1 4.6073 -0.8952 6.6518
40 1 3.8556 1.7991 5.5251
41 1 2.9411 0.2654 5.4937
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000705257462.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:07:59
Heat of formation + Delta-G solvation = -98.798352 kcal
Electronic energy + Delta-G solvation = -22520.645241 eV
Core-core repulsion = 19399.657343 eV
Total energy + Delta-G solvation = -3120.987898 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.67457 -39.87943 -38.24483 -36.08280 -34.49737 -33.72122 -31.09039 -29.55360
-28.61704 -27.19060 -26.53076 -24.57120 -22.40932 -21.62308 -20.94661 -20.64880
-19.04362 -17.64566 -17.57954 -17.01786 -16.67128 -16.21075 -16.04023 -15.80227
-15.51935 -15.11231 -14.78625 -14.25621 -14.11324 -13.98331 -13.75295 -13.24102
-13.22672 -13.06323 -12.80099 -12.47574 -12.22948 -12.16314 -11.87445 -11.84208
-11.76542 -11.73196 -11.41214 -11.40920 -11.27273 -10.95559 -10.80941 -10.35935
-9.43482 -8.53303 -6.23585 1.17204 1.27222 1.35121 1.77922 2.14802
2.59678 2.88024 3.07724 3.58178 3.76996 3.85047 3.90757 4.00321
4.13342 4.18180 4.32695 4.49718 4.52313 4.58770 4.64902 4.67295
4.71243 4.72035 4.80947 4.81614 4.88812 4.91700 5.02122 5.05705
5.12683 5.15229 5.21209 5.32089 5.38113 5.43170 5.54892 5.71911
5.83526 5.93446 6.47616 6.98505 7.35415 7.81274 8.58807
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.019663 B = 0.009146 C = 0.007832
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1423.624139 B = 3060.698872 C = 3574.202028
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.126 4.126
3 H 0.082 0.918
4 C 0.053 3.947
5 O -0.398 6.398
6 C 0.085 3.915
7 C -0.131 4.131
8 H 0.101 0.899
9 C 0.487 3.513
10 O -0.615 6.615
11 N -0.465 5.465
12 C -0.332 4.332
13 H 0.081 0.919
14 C 0.065 3.935
15 N -0.874 5.874
16 Si 0.860 3.140
17 H -0.243 1.243
18 H -0.280 1.280
19 H -0.268 1.268
20 C 0.117 3.883
21 C -0.124 4.124
22 C -0.108 4.108
23 C -0.111 4.111
24 C -0.133 4.133
25 H 0.042 0.958
26 H 0.087 0.913
27 H 0.065 0.935
28 H 0.106 0.894
29 H 0.081 0.919
30 H 0.083 0.917
31 H 0.071 0.929
32 H 0.280 0.720
33 H 0.067 0.933
34 H 0.063 0.937
35 H 0.062 0.938
36 H 0.079 0.921
37 H 0.081 0.919
38 H 0.082 0.918
39 H 0.057 0.943
40 H 0.062 0.938
41 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.954 3.370 -1.652 3.873
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.145 4.145
3 H 0.100 0.900
4 C -0.024 4.024
5 O -0.317 6.317
6 C 0.008 3.992
7 C -0.152 4.152
8 H 0.119 0.881
9 C 0.277 3.723
10 O -0.502 6.502
11 N -0.186 5.186
12 C -0.459 4.459
13 H 0.098 0.902
14 C -0.142 4.142
15 N -0.509 5.509
16 Si 0.685 3.315
17 H -0.168 1.168
18 H -0.206 1.206
19 H -0.193 1.193
20 C 0.014 3.986
21 C -0.162 4.162
22 C -0.146 4.146
23 C -0.148 4.148
24 C -0.171 4.171
25 H 0.061 0.939
26 H 0.105 0.895
27 H 0.084 0.916
28 H 0.124 0.876
29 H 0.099 0.901
30 H 0.101 0.899
31 H 0.089 0.911
32 H 0.090 0.910
33 H 0.086 0.914
34 H 0.081 0.919
35 H 0.081 0.919
36 H 0.098 0.902
37 H 0.099 0.901
38 H 0.100 0.900
39 H 0.076 0.924
40 H 0.080 0.920
41 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 1.150 3.727 -1.889 4.334
hybrid contribution -1.118 0.414 0.646 1.355
sum 0.032 4.141 -1.243 4.324
Atomic orbital electron populations
1.21849 0.92668 1.02714 1.02380 1.22624 0.97601 1.00861 0.93428
0.89984 1.23649 0.87670 0.95186 0.95857 1.89043 1.37013 1.74201
1.31447 1.22986 0.99399 0.94597 0.82259 1.22684 0.98825 0.96569
0.97139 0.88128 1.20837 0.82676 0.87198 0.81547 1.90458 1.65196
1.21707 1.72802 1.43883 1.39496 1.17266 1.17910 1.18520 0.91873
0.88942 1.46612 0.90151 1.25743 0.98018 0.96315 0.94097 1.69791
1.17660 1.18481 1.44944 0.87374 0.80850 0.82528 0.80736 1.16848
1.20610 1.19340 1.21930 0.90044 0.94252 0.92375 1.22598 0.94940
1.00397 0.98262 1.22408 0.96749 1.02125 0.93322 1.22234 0.94519
1.00631 0.97432 1.22490 1.00087 0.99893 0.94660 0.93898 0.89454
0.91637 0.87565 0.90110 0.89913 0.91079 0.90952 0.91448 0.91879
0.91942 0.90233 0.90061 0.89958 0.92437 0.91974 0.92937
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.27 8.82 71.98 0.64 -3.63 16
2 C -0.13 -4.67 3.30 -9.78 -0.03 -4.71 16
3 H 0.08 3.38 6.51 -2.39 -0.02 3.36 16
4 C 0.05 1.69 7.18 72.49 0.52 2.21 16
5 O -0.40 -15.86 11.65 -148.98 -1.74 -17.60 16
6 C 0.08 3.55 6.71 72.48 0.49 4.04 16
7 C -0.13 -5.72 1.61 -10.53 -0.02 -5.73 16
8 H 0.10 4.57 3.07 -2.39 -0.01 4.56 16
9 C 0.49 23.77 5.29 87.65 0.46 24.23 16
10 O -0.62 -32.30 14.65 -3.08 -0.05 -32.35 16
11 N -0.47 -22.00 1.84 -609.37 -1.12 -23.12 16
12 C -0.33 -16.35 6.53 84.04 0.55 -15.80 16
13 H 0.08 4.26 6.90 -2.91 -0.02 4.24 16
14 C 0.07 3.22 3.97 84.93 0.34 3.56 16
15 N -0.87 -44.63 13.96 21.66 0.30 -44.33 16
16 Si 0.86 39.41 24.26 68.60 1.66 41.07 16
17 H -0.24 -10.73 4.26 99.48 0.42 -10.31 16
18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16
19 H -0.27 -12.76 5.90 99.48 0.59 -12.17 16
20 C 0.12 4.92 3.29 45.72 0.15 5.07 16
21 C -0.12 -4.41 6.42 31.70 0.20 -4.21 16
22 C -0.11 -3.02 6.91 31.91 0.22 -2.80 16
23 C -0.11 -3.40 6.83 31.67 0.22 -3.18 16
24 C -0.13 -5.09 6.27 31.32 0.20 -4.90 16
25 H 0.04 1.45 6.41 -2.39 -0.02 1.44 16
26 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16
27 H 0.06 1.86 8.09 -2.39 -0.02 1.84 16
28 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16
29 H 0.08 2.18 7.83 -2.39 -0.02 2.16 16
30 H 0.08 3.79 7.07 -2.39 -0.02 3.77 16
31 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16
32 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16
33 H 0.07 2.99 6.96 -2.39 -0.02 2.97 16
34 H 0.06 2.48 6.38 -2.39 -0.02 2.47 16
35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16
36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16
38 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16
39 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16
40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16
41 H 0.05 2.31 4.88 -2.38 -0.01 2.29 16
Total: -1.00 -58.46 302.45 3.61 -54.85
By element:
Atomic # 1 Polarization: 26.72 SS G_CDS: 0.62 Total: 27.33 kcal
Atomic # 6 Polarization: -9.79 SS G_CDS: 3.93 Total: -5.86 kcal
Atomic # 7 Polarization: -66.63 SS G_CDS: -0.82 Total: -67.45 kcal
Atomic # 8 Polarization: -48.17 SS G_CDS: -1.78 Total: -49.95 kcal
Atomic # 14 Polarization: 39.41 SS G_CDS: 1.66 Total: 41.07 kcal
Total: -58.46 3.61 -54.85 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000705257462.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.947 kcal
(2) G-P(sol) polarization free energy of solvation -58.464 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.411 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.798 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds