Wall clock time and date at job start Mon Mar 30 2020 05:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 110.46026 * 2 1 4 4 C 1.54483 * 110.62576 * 237.31398 * 2 1 3 5 5 O 1.44420 * 104.80226 * 265.27785 * 4 2 1 6 6 C 1.44421 * 105.27936 * 319.49079 * 5 4 2 7 7 C 1.54480 * 104.80134 * 40.51129 * 6 5 4 8 8 H 1.08994 * 110.62580 * 94.72630 * 7 6 5 9 9 C 1.50702 * 110.50922 * 217.37969 * 7 6 5 10 10 O 1.21283 * 120.00262 * 114.64545 * 9 7 6 11 11 N 1.34777 * 119.99928 * 294.36451 * 9 7 6 12 12 C 1.46923 * 120.63273 * 0.28271 * 11 9 7 13 13 C 1.53192 * 108.77564 * 233.58447 * 12 11 9 14 14 C 1.53043 * 109.31235 * 305.36054 * 13 12 11 15 15 C 1.53036 * 109.53620 * 61.36579 * 14 13 12 16 16 H 1.08994 * 109.49976 * 58.61995 * 15 14 13 17 17 C 1.50705 * 109.49780 * 178.68453 * 15 14 13 18 18 H 1.08000 * 119.99560 * 119.99795 * 17 15 14 19 19 C 1.37871 * 119.99961 * 300.00047 * 17 15 14 20 20 N 1.31509 * 119.99808 * 359.97438 * 19 17 15 21 21 Si 1.86804 * 119.99943 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47153 * 89.99871 * 21 19 17 23 23 H 1.48500 * 109.47138 * 209.99862 * 21 19 17 24 24 H 1.48494 * 109.46867 * 329.99949 * 21 19 17 25 25 C 1.46929 * 120.63092 * 179.97438 * 11 9 7 26 26 H 1.08997 * 109.46854 * 297.39789 * 1 2 3 27 27 H 1.09004 * 109.46407 * 57.39302 * 1 2 3 28 28 H 1.08993 * 109.47060 * 177.39294 * 1 2 3 29 29 H 1.09004 * 110.37016 * 24.11126 * 4 2 1 30 30 H 1.09001 * 110.36888 * 146.44440 * 4 2 1 31 31 H 1.09003 * 110.37067 * 281.68321 * 6 5 4 32 32 H 1.08996 * 110.37667 * 159.34603 * 6 5 4 33 33 H 1.09003 * 109.58523 * 353.36859 * 12 11 9 34 34 H 1.08996 * 109.59476 * 113.79560 * 12 11 9 35 35 H 1.08998 * 109.49840 * 65.31182 * 13 12 11 36 36 H 1.09006 * 109.49996 * 185.40914 * 13 12 11 37 37 H 1.08996 * 109.46188 * 181.38449 * 14 13 12 38 38 H 1.09005 * 109.46046 * 301.36136 * 14 13 12 39 39 H 0.97005 * 120.00010 * 180.02562 * 20 19 17 40 40 H 1.09007 * 109.58815 * 246.20444 * 25 11 9 41 41 H 1.08999 * 109.58776 * 6.63087 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0743 -0.7808 -1.2169 5 8 2.3118 -2.1166 -0.7219 6 6 2.8786 -1.9395 0.5946 7 6 2.0714 -0.7798 1.2190 8 1 1.2491 -1.1653 1.8217 9 6 2.9682 0.0991 2.0523 10 8 3.1700 1.2480 1.7201 11 7 3.5415 -0.3899 3.1697 12 6 3.3067 -1.7794 3.5851 13 6 2.8105 -1.7837 5.0344 14 6 3.8078 -1.0251 5.9131 15 6 3.9052 0.4271 5.4402 16 1 2.9209 0.8926 5.4893 17 6 4.8630 1.1815 6.3260 18 1 5.7448 1.6386 5.9018 19 6 4.6137 1.2878 7.6778 20 7 3.5398 0.7315 8.1941 21 14 5.8014 2.2223 8.7759 22 1 5.3965 3.6495 8.8413 23 1 5.7776 1.6379 10.1409 24 1 7.1740 2.1221 8.2184 25 6 4.4187 0.4546 3.9921 26 1 -0.3633 0.4729 0.9124 27 1 -0.3632 0.5538 -0.8658 28 1 -0.3633 -1.0265 -0.0467 29 1 1.3350 -0.7987 -2.0177 30 1 3.0049 -0.3352 -1.5683 31 1 3.9327 -1.6716 0.5210 32 1 2.7574 -2.8475 1.1852 33 1 2.5535 -2.2314 2.9397 34 1 4.2366 -2.3438 3.5157 35 1 1.8363 -1.2976 5.0869 36 1 2.7240 -2.8117 5.3864 37 1 3.4696 -1.0476 6.9490 38 1 4.7878 -1.4969 5.8407 39 1 3.3641 0.8066 9.1451 40 1 5.4374 0.0684 3.9551 41 1 4.3995 1.4772 3.6153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705282823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:47 Heat of formation + Delta-G solvation = -94.739762 kcal Electronic energy + Delta-G solvation = -21476.771447 eV Core-core repulsion = 18355.959543 eV Total energy + Delta-G solvation = -3120.811904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56588 -38.63695 -36.76965 -33.63909 -33.38123 -31.51304 -30.79471 -29.47611 -26.50116 -25.12841 -24.94875 -23.02023 -21.78122 -20.97502 -19.52208 -18.45407 -17.23666 -16.45764 -16.29156 -15.49870 -15.36791 -14.97794 -14.70515 -14.17186 -13.68176 -13.60354 -13.19984 -12.94594 -12.77380 -12.67837 -12.35999 -12.27654 -12.05281 -11.77884 -11.08238 -11.03956 -10.99849 -10.89395 -10.78464 -10.70867 -10.34634 -9.99690 -9.84911 -9.83336 -9.51707 -9.32465 -8.86777 -8.42407 -7.96657 -6.05151 -4.12437 2.91955 3.28030 3.34288 3.35864 3.41434 3.88858 4.34745 4.40066 4.64457 4.73721 4.94361 5.03069 5.10945 5.24442 5.29788 5.42518 5.54943 5.57033 5.59193 5.62054 5.72738 5.74714 5.81434 6.03390 6.06899 6.18004 6.28311 6.34124 6.42525 6.60747 6.64010 6.75083 6.90329 7.11791 7.28595 7.65389 7.86113 7.94607 8.03530 8.33301 8.55071 8.91063 9.52765 11.00359 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.036303 B = 0.004592 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.096236 B = 6096.711727 C = 6319.963298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 H 0.108 0.892 4 C 0.049 3.951 5 O -0.373 6.373 6 C 0.058 3.942 7 C -0.141 4.141 8 H 0.108 0.892 9 C 0.516 3.484 10 O -0.547 6.547 11 N -0.600 5.600 12 C 0.104 3.896 13 C -0.135 4.135 14 C -0.113 4.113 15 C 0.041 3.959 16 H 0.029 0.971 17 C -0.515 4.515 18 H 0.057 0.943 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.116 3.884 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.036 0.964 39 H 0.261 0.739 40 H 0.056 0.944 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 -6.982 -13.243 15.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.138 4.138 3 H 0.126 0.874 4 C -0.028 4.028 5 O -0.292 6.292 6 C -0.019 4.019 7 C -0.163 4.163 8 H 0.126 0.874 9 C 0.303 3.697 10 O -0.426 6.426 11 N -0.331 5.331 12 C -0.019 4.019 13 C -0.173 4.173 14 C -0.151 4.151 15 C 0.022 3.978 16 H 0.047 0.953 17 C -0.554 4.554 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.005 4.005 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.225 -6.605 -13.339 15.472 hybrid contribution 0.618 0.590 0.974 1.295 sum -3.607 -6.015 -12.365 14.216 Atomic orbital electron populations 1.21804 0.93841 1.01936 1.02182 1.22539 0.96859 1.01903 0.92526 0.87364 1.23536 1.00183 0.82540 0.96523 1.89101 1.83162 1.26336 1.30600 1.23460 0.96843 0.97642 0.83973 1.22759 0.99186 0.96715 0.97644 0.87405 1.20172 0.80609 0.87735 0.81178 1.90635 1.62762 1.18454 1.70734 1.48285 1.47683 1.13233 1.23912 1.21878 1.00437 0.82271 0.97272 1.22010 1.00850 1.00356 0.94129 1.21637 0.95724 0.96157 1.01559 1.19054 0.97178 0.93253 0.88346 0.95262 1.21075 1.08320 1.33424 0.92531 0.92481 1.24930 0.95339 0.95442 0.98054 1.69868 1.26013 1.44222 1.12680 0.86575 0.81439 0.80073 0.79814 1.20651 1.21231 1.19869 1.22130 0.91538 0.94198 0.92603 0.92188 0.92284 0.92346 0.88907 0.92119 0.91790 0.88192 0.91012 0.91703 0.92353 0.92342 0.88576 0.94528 0.92952 0.92600 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.95 37.16 0.33 -1.12 16 2 C -0.12 -1.47 3.30 -89.05 -0.29 -1.76 16 3 H 0.11 1.56 6.50 -51.93 -0.34 1.22 16 4 C 0.05 0.54 7.19 37.94 0.27 0.81 16 5 O -0.37 -4.71 11.65 -35.23 -0.41 -5.12 16 6 C 0.06 0.69 6.12 37.93 0.23 0.92 16 7 C -0.14 -1.88 2.19 -90.20 -0.20 -2.08 16 8 H 0.11 1.33 7.18 -51.93 -0.37 0.95 16 9 C 0.52 9.04 6.95 -10.98 -0.08 8.97 16 10 O -0.55 -11.44 14.69 5.55 0.08 -11.36 16 11 N -0.60 -10.74 2.97 -172.47 -0.51 -11.26 16 12 C 0.10 1.54 5.74 -3.71 -0.02 1.52 16 13 C -0.14 -2.32 6.08 -26.61 -0.16 -2.48 16 14 C -0.11 -2.47 4.96 -26.69 -0.13 -2.60 16 15 C 0.04 0.99 2.27 -91.41 -0.21 0.78 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.51 -13.79 8.56 -34.44 -0.29 -14.09 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.71 11.31 55.43 0.63 -24.08 16 21 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.12 2.47 5.69 -3.46 -0.02 2.45 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.84 7.88 -51.93 -0.41 0.43 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.80 7.86 -51.93 -0.41 0.39 16 32 H 0.10 0.99 6.86 -51.93 -0.36 0.64 16 33 H 0.07 0.85 4.49 -51.93 -0.23 0.62 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.10 2.40 6.04 -51.93 -0.31 2.09 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.81 7.00 -51.93 -0.36 1.45 16 LS Contribution 316.06 15.07 4.76 4.76 Total: -1.00 -29.66 316.06 -7.70 -37.36 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.56 Total: 0.84 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -0.66 Total: -7.05 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.12 Total: -35.34 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.33 Total: -16.47 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.66 -7.70 -37.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705282823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.380 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds