Wall clock time and date at job start Mon Mar 30 2020 05:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 110.46026 * 2 1 4 4 C 1.54483 * 110.62576 * 237.31398 * 2 1 3 5 5 O 1.44420 * 104.80226 * 265.27785 * 4 2 1 6 6 C 1.44421 * 105.27936 * 319.49079 * 5 4 2 7 7 C 1.54480 * 104.80134 * 40.51129 * 6 5 4 8 8 H 1.08994 * 110.62580 * 94.72630 * 7 6 5 9 9 C 1.50702 * 110.50922 * 217.37969 * 7 6 5 10 10 O 1.21283 * 120.00262 * 114.64545 * 9 7 6 11 11 N 1.34777 * 119.99928 * 294.36451 * 9 7 6 12 12 C 1.46923 * 120.63273 * 0.28271 * 11 9 7 13 13 C 1.53192 * 108.77564 * 233.58447 * 12 11 9 14 14 C 1.53043 * 109.31235 * 305.36054 * 13 12 11 15 15 C 1.53036 * 109.53620 * 61.36579 * 14 13 12 16 16 H 1.08994 * 109.49976 * 58.61995 * 15 14 13 17 17 C 1.50705 * 109.49780 * 178.68453 * 15 14 13 18 18 H 1.08000 * 119.99560 * 119.99795 * 17 15 14 19 19 C 1.37871 * 119.99961 * 300.00047 * 17 15 14 20 20 N 1.31509 * 119.99808 * 359.97438 * 19 17 15 21 21 Si 1.86804 * 119.99943 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47153 * 89.99871 * 21 19 17 23 23 H 1.48500 * 109.47138 * 209.99862 * 21 19 17 24 24 H 1.48494 * 109.46867 * 329.99949 * 21 19 17 25 25 C 1.46929 * 120.63092 * 179.97438 * 11 9 7 26 26 H 1.08997 * 109.46854 * 297.39789 * 1 2 3 27 27 H 1.09004 * 109.46407 * 57.39302 * 1 2 3 28 28 H 1.08993 * 109.47060 * 177.39294 * 1 2 3 29 29 H 1.09004 * 110.37016 * 24.11126 * 4 2 1 30 30 H 1.09001 * 110.36888 * 146.44440 * 4 2 1 31 31 H 1.09003 * 110.37067 * 281.68321 * 6 5 4 32 32 H 1.08996 * 110.37667 * 159.34603 * 6 5 4 33 33 H 1.09003 * 109.58523 * 353.36859 * 12 11 9 34 34 H 1.08996 * 109.59476 * 113.79560 * 12 11 9 35 35 H 1.08998 * 109.49840 * 65.31182 * 13 12 11 36 36 H 1.09006 * 109.49996 * 185.40914 * 13 12 11 37 37 H 1.08996 * 109.46188 * 181.38449 * 14 13 12 38 38 H 1.09005 * 109.46046 * 301.36136 * 14 13 12 39 39 H 0.97005 * 120.00010 * 180.02562 * 20 19 17 40 40 H 1.09007 * 109.58815 * 246.20444 * 25 11 9 41 41 H 1.08999 * 109.58776 * 6.63087 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9111 1.0212 0.0000 4 6 2.0743 -0.7808 -1.2169 5 8 2.3118 -2.1166 -0.7219 6 6 2.8786 -1.9395 0.5946 7 6 2.0714 -0.7798 1.2190 8 1 1.2491 -1.1653 1.8217 9 6 2.9682 0.0991 2.0523 10 8 3.1700 1.2480 1.7201 11 7 3.5415 -0.3899 3.1697 12 6 3.3067 -1.7794 3.5851 13 6 2.8105 -1.7837 5.0344 14 6 3.8078 -1.0251 5.9131 15 6 3.9052 0.4271 5.4402 16 1 2.9209 0.8926 5.4893 17 6 4.8630 1.1815 6.3260 18 1 5.7448 1.6386 5.9018 19 6 4.6137 1.2878 7.6778 20 7 3.5398 0.7315 8.1941 21 14 5.8014 2.2223 8.7759 22 1 5.3965 3.6495 8.8413 23 1 5.7776 1.6379 10.1409 24 1 7.1740 2.1221 8.2184 25 6 4.4187 0.4546 3.9921 26 1 -0.3633 0.4729 0.9124 27 1 -0.3632 0.5538 -0.8658 28 1 -0.3633 -1.0265 -0.0467 29 1 1.3350 -0.7987 -2.0177 30 1 3.0049 -0.3352 -1.5683 31 1 3.9327 -1.6716 0.5210 32 1 2.7574 -2.8475 1.1852 33 1 2.5535 -2.2314 2.9397 34 1 4.2366 -2.3438 3.5157 35 1 1.8363 -1.2976 5.0869 36 1 2.7240 -2.8117 5.3864 37 1 3.4696 -1.0476 6.9490 38 1 4.7878 -1.4969 5.8407 39 1 3.3641 0.8066 9.1451 40 1 5.4374 0.0684 3.9551 41 1 4.3995 1.4772 3.6153 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705282823.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:46 Heat of formation + Delta-G solvation = -113.264179 kcal Electronic energy + Delta-G solvation = -21477.574726 eV Core-core repulsion = 18355.959543 eV Total energy + Delta-G solvation = -3121.615183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.78529 -39.85495 -38.31409 -35.44042 -34.37927 -33.18664 -32.24899 -30.81006 -27.37631 -27.02779 -26.36153 -24.14138 -23.40166 -22.17974 -20.95203 -19.85511 -18.68243 -18.15229 -17.44020 -16.87475 -16.63571 -16.40769 -16.06581 -15.55448 -15.12870 -14.91736 -14.61613 -14.52272 -14.09337 -13.87131 -13.71128 -13.46992 -13.27867 -13.03582 -12.85880 -12.69600 -12.57037 -12.02295 -11.97336 -11.89548 -11.83533 -11.70985 -11.58354 -11.25104 -10.88016 -10.76919 -10.69550 -10.44455 -9.53118 -8.11939 -6.27166 1.40132 1.41414 1.50998 1.55508 2.02408 2.42602 2.94420 3.14846 3.33644 3.56400 3.77599 3.94381 4.07291 4.10543 4.21514 4.24745 4.36462 4.51630 4.55500 4.59050 4.68706 4.72628 4.75709 4.79925 4.84467 4.86163 4.94360 5.01401 5.10401 5.16497 5.26493 5.31978 5.46725 5.54536 5.60280 5.73352 5.92018 6.12492 6.33268 6.51034 6.82200 7.14485 7.41200 8.91677 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.036303 B = 0.004592 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.096236 B = 6096.711727 C = 6319.963298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 H 0.081 0.919 4 C 0.051 3.949 5 O -0.379 6.379 6 C 0.061 3.939 7 C -0.135 4.135 8 H 0.126 0.874 9 C 0.511 3.489 10 O -0.590 6.590 11 N -0.604 5.604 12 C 0.105 3.895 13 C -0.128 4.128 14 C -0.106 4.106 15 C 0.042 3.958 16 H -0.015 1.015 17 C -0.539 4.539 18 H 0.052 0.948 19 C 0.018 3.982 20 N -0.913 5.913 21 Si 0.954 3.046 22 H -0.280 1.280 23 H -0.280 1.280 24 H -0.267 1.267 25 C 0.129 3.871 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.039 0.961 39 H 0.262 0.738 40 H 0.063 0.937 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.474 -9.049 -14.381 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.141 4.141 3 H 0.100 0.900 4 C -0.026 4.026 5 O -0.298 6.298 6 C -0.016 4.016 7 C -0.157 4.157 8 H 0.143 0.857 9 C 0.300 3.700 10 O -0.471 6.471 11 N -0.334 5.334 12 C -0.016 4.016 13 C -0.166 4.166 14 C -0.145 4.145 15 C 0.022 3.978 16 H 0.004 0.996 17 C -0.577 4.577 18 H 0.070 0.930 19 C -0.181 4.181 20 N -0.552 5.552 21 Si 0.780 3.220 22 H -0.206 1.206 23 H -0.205 1.205 24 H -0.192 1.192 25 C 0.007 3.993 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.135 0.865 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.147 0.853 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.492 -8.700 -14.488 17.486 hybrid contribution 0.685 1.291 1.324 1.972 sum -3.806 -7.409 -13.164 15.578 Atomic orbital electron populations 1.21779 0.92181 1.02920 1.02412 1.22546 0.98235 1.00519 0.92817 0.90030 1.23608 1.00733 0.81784 0.96447 1.89102 1.83142 1.26788 1.30730 1.23532 0.96086 0.97920 0.84066 1.22809 0.98777 0.96616 0.97465 0.85664 1.20973 0.80289 0.87713 0.81020 1.90617 1.64102 1.20611 1.71764 1.48342 1.47175 1.14204 1.23716 1.22130 1.02749 0.80642 0.96127 1.21923 0.98547 1.01200 0.94946 1.21430 0.97187 0.95195 1.00649 1.18958 0.94332 0.94369 0.90105 0.99647 1.21444 1.08736 1.34087 0.93468 0.93008 1.25668 0.96873 0.96238 0.99321 1.70003 1.27293 1.45005 1.12901 0.85617 0.79638 0.78603 0.78167 1.20632 1.20512 1.19155 1.21669 0.92523 0.93818 0.91290 0.93256 0.90761 0.91002 0.86517 0.92427 0.92489 0.85345 0.87004 0.89481 0.93711 0.88985 0.91956 0.94268 0.92922 0.91852 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.95 71.99 0.64 -1.86 16 2 C -0.12 -2.82 3.30 -9.77 -0.03 -2.85 16 3 H 0.08 2.36 6.50 -2.39 -0.02 2.35 16 4 C 0.05 1.00 7.19 72.49 0.52 1.52 16 5 O -0.38 -8.25 11.65 -148.98 -1.74 -9.99 16 6 C 0.06 1.24 6.12 72.49 0.44 1.68 16 7 C -0.14 -3.30 2.19 -10.52 -0.02 -3.32 16 8 H 0.13 2.65 7.18 -2.39 -0.02 2.63 16 9 C 0.51 17.69 6.95 87.66 0.61 18.30 16 10 O -0.59 -25.41 14.69 -3.04 -0.04 -25.45 16 11 N -0.60 -21.19 2.97 -817.98 -2.43 -23.62 16 12 C 0.10 2.78 5.74 86.36 0.50 3.28 16 13 C -0.13 -4.16 6.08 30.67 0.19 -3.97 16 14 C -0.11 -4.69 4.96 30.62 0.15 -4.54 16 15 C 0.04 2.08 2.27 -11.30 -0.03 2.06 16 16 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 17 C -0.54 -29.80 8.56 25.60 0.22 -29.58 16 18 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 19 C 0.02 1.00 5.30 84.65 0.45 1.45 16 20 N -0.91 -52.04 11.31 21.44 0.24 -51.79 16 21 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 C 0.13 5.64 5.69 86.52 0.49 6.13 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.12 1.74 7.88 -2.39 -0.02 1.72 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.26 7.86 -2.39 -0.02 1.24 16 32 H 0.13 1.88 6.86 -2.39 -0.02 1.86 16 33 H 0.11 2.11 4.49 -2.39 -0.01 2.10 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 37 H 0.06 3.18 6.04 -2.39 -0.01 3.17 16 38 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 40 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 41 H 0.05 2.51 7.00 -2.39 -0.02 2.50 16 Total: -1.00 -67.49 316.06 3.20 -64.29 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.00 Total: 12.75 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 4.13 Total: -11.71 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -2.18 Total: -75.41 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -1.78 Total: -35.44 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -67.49 3.20 -64.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705282823.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.978 kcal (2) G-P(sol) polarization free energy of solvation -67.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds