Wall clock time and date at job start Mon Mar 30 2020 05:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.45783 * 2 1 4 4 C 1.54477 * 110.51146 * 237.39610 * 2 1 3 5 5 O 1.44429 * 104.80255 * 265.19524 * 4 2 1 6 6 C 1.44420 * 105.27676 * 319.49199 * 5 4 2 7 7 C 1.54476 * 104.80608 * 40.50781 * 6 5 4 8 8 H 1.09000 * 110.50986 * 94.66401 * 7 6 5 9 9 C 1.50695 * 110.51365 * 217.38015 * 7 6 5 10 10 O 1.21286 * 120.00131 * 114.64198 * 9 7 6 11 11 N 1.34776 * 119.99951 * 294.64065 * 9 7 6 12 12 C 1.46925 * 120.63150 * 0.02562 * 11 9 7 13 13 C 1.53190 * 108.77632 * 126.36885 * 12 11 9 14 14 C 1.53038 * 109.31390 * 54.63472 * 13 12 11 15 15 C 1.53035 * 109.53894 * 298.63523 * 14 13 12 16 16 H 1.09008 * 109.50175 * 301.41460 * 15 14 13 17 17 C 1.50701 * 109.49964 * 181.34935 * 15 14 13 18 18 H 1.07995 * 120.00022 * 239.99892 * 17 15 14 19 19 C 1.37872 * 119.99926 * 60.00105 * 17 15 14 20 20 N 1.31518 * 120.00322 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 119.99992 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47124 * 89.99887 * 21 19 17 23 23 H 1.48505 * 109.47223 * 209.99775 * 21 19 17 24 24 H 1.48504 * 109.47227 * 329.99703 * 21 19 17 25 25 C 1.46928 * 120.62934 * 179.72112 * 11 9 7 26 26 H 1.09002 * 109.46898 * 179.29423 * 1 2 3 27 27 H 1.08996 * 109.46975 * 299.30047 * 1 2 3 28 28 H 1.08997 * 109.46767 * 59.29997 * 1 2 3 29 29 H 1.08997 * 110.37734 * 24.02417 * 4 2 1 30 30 H 1.09004 * 110.37417 * 146.25770 * 4 2 1 31 31 H 1.08999 * 110.37378 * 159.34039 * 6 5 4 32 32 H 1.09002 * 110.36934 * 281.56521 * 6 5 4 33 33 H 1.09002 * 109.58375 * 246.15552 * 12 11 9 34 34 H 1.09005 * 109.58497 * 6.57974 * 12 11 9 35 35 H 1.09002 * 109.49922 * 174.58917 * 13 12 11 36 36 H 1.09007 * 109.49474 * 294.68085 * 13 12 11 37 37 H 1.09001 * 109.45827 * 58.65642 * 14 13 12 38 38 H 1.08997 * 109.45878 * 178.61376 * 14 13 12 39 39 H 0.96994 * 120.00454 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.59061 * 353.41530 * 25 11 9 41 41 H 1.08998 * 109.58834 * 113.84542 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0713 -0.7796 -1.2188 5 8 2.3102 -2.1159 -0.7257 6 6 2.8801 -1.9400 0.5896 7 6 2.0744 -0.7809 1.2171 8 1 1.2534 -1.1690 1.8200 9 6 2.9731 0.0973 2.0489 10 8 3.1740 1.2465 1.7172 11 7 3.5536 -0.3943 3.1615 12 6 3.3202 -1.7844 3.5759 13 6 4.6737 -2.4765 3.7647 14 6 5.5257 -1.6638 4.7424 15 6 5.7733 -0.2675 4.1671 16 1 6.2746 -0.3547 3.2031 17 6 6.6399 0.5207 5.1151 18 1 6.2733 1.4424 5.5423 19 6 7.9007 0.0653 5.4371 20 7 8.3475 -1.0569 4.9166 21 14 8.9746 1.0419 6.6128 22 1 8.7256 0.5873 8.0044 23 1 10.4040 0.8289 6.2708 24 1 8.6481 2.4861 6.4979 25 6 4.4371 0.4479 3.9794 26 1 -0.3633 -1.0276 -0.0127 27 1 -0.3633 0.5029 0.8962 28 1 -0.3633 0.5247 -0.8836 29 1 1.3302 -0.7969 -2.0179 30 1 3.0001 -0.3325 -1.5733 31 1 2.7602 -2.8485 1.1797 32 1 3.9344 -1.6739 0.5137 33 1 2.7687 -1.7978 4.5160 34 1 2.7483 -2.3038 2.8069 35 1 4.5174 -3.4785 4.1643 36 1 5.1854 -2.5430 2.8045 37 1 5.0023 -1.5768 5.6945 38 1 6.4800 -2.1671 4.8975 39 1 9.2343 -1.3775 5.1434 40 1 4.6020 1.4008 3.4767 41 1 3.9787 0.6206 4.9532 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705282826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:49 Heat of formation + Delta-G solvation = -93.221790 kcal Electronic energy + Delta-G solvation = -21575.809047 eV Core-core repulsion = 18455.062967 eV Total energy + Delta-G solvation = -3120.746080 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56629 -38.60795 -36.79596 -33.64635 -33.36592 -31.47915 -30.87713 -29.45787 -26.48608 -25.12837 -24.93930 -22.97967 -21.77100 -21.00854 -19.58076 -18.30942 -17.32615 -16.34783 -16.32805 -15.49502 -15.37770 -14.95338 -14.56757 -14.24340 -13.77023 -13.57226 -13.25763 -12.92021 -12.76646 -12.55598 -12.37047 -12.29318 -12.08771 -11.73402 -11.05415 -11.03212 -10.99614 -10.89686 -10.77254 -10.70868 -10.33330 -9.99549 -9.84515 -9.78076 -9.50343 -9.33084 -8.86900 -8.42117 -7.97085 -6.05126 -4.12454 2.91945 3.27599 3.34217 3.36165 3.41680 3.93873 4.36412 4.40032 4.65070 4.75414 4.96349 5.06130 5.13192 5.23998 5.29854 5.44039 5.56522 5.57143 5.63013 5.68277 5.73749 5.74968 5.81730 5.99252 6.07180 6.17980 6.27920 6.34753 6.43431 6.61201 6.68202 6.76827 6.91746 7.11526 7.28605 7.65404 7.86158 7.94645 8.03782 8.33151 8.55162 8.91114 9.52782 11.00440 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033937 B = 0.004794 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.853681 B = 5839.126675 C = 6100.620544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 H 0.108 0.892 4 C 0.048 3.952 5 O -0.373 6.373 6 C 0.057 3.943 7 C -0.140 4.140 8 H 0.106 0.894 9 C 0.516 3.484 10 O -0.547 6.547 11 N -0.600 5.600 12 C 0.102 3.898 13 C -0.136 4.136 14 C -0.113 4.113 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.515 4.515 18 H 0.057 0.943 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.117 3.883 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.036 0.964 38 H 0.096 0.904 39 H 0.261 0.739 40 H 0.079 0.921 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.387 -3.572 -6.992 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.139 4.139 3 H 0.126 0.874 4 C -0.028 4.028 5 O -0.292 6.292 6 C -0.021 4.021 7 C -0.162 4.162 8 H 0.124 0.876 9 C 0.303 3.697 10 O -0.426 6.426 11 N -0.331 5.331 12 C -0.021 4.021 13 C -0.174 4.174 14 C -0.151 4.151 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.553 4.553 18 H 0.075 0.925 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.004 4.004 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.156 -3.276 -7.259 15.378 hybrid contribution 0.721 0.536 0.925 1.290 sum -12.435 -2.740 -6.333 14.221 Atomic orbital electron populations 1.21797 0.93927 1.01909 1.02013 1.22539 0.96696 1.01947 0.92686 0.87371 1.23532 1.00272 0.82623 0.96422 1.89104 1.83031 1.26222 1.30821 1.23515 0.97169 0.97538 0.83830 1.22745 0.98996 0.96800 0.97645 0.87635 1.20184 0.80733 0.87784 0.81001 1.90636 1.63000 1.18656 1.70276 1.48279 1.46762 1.13029 1.25029 1.21919 0.98556 0.81784 0.99858 1.22018 0.95201 0.98540 1.01613 1.21631 1.00049 0.98002 0.95375 1.18889 0.89743 0.92163 0.97155 0.95331 1.21061 0.99470 1.07710 1.27089 0.92484 1.24929 0.97648 0.95047 0.96125 1.69866 1.18256 1.20781 1.43839 0.86576 0.79682 0.80548 0.81104 1.20672 1.21218 1.19852 1.21925 0.91278 0.94421 0.92746 0.92358 0.92388 0.92270 0.88964 0.92017 0.88085 0.91393 0.91757 0.90872 0.92304 0.92308 0.94545 0.88556 0.92941 0.90290 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.95 37.16 0.33 -1.04 16 2 C -0.12 -1.48 3.30 -89.05 -0.29 -1.77 16 3 H 0.11 1.56 6.50 -51.93 -0.34 1.22 16 4 C 0.05 0.57 7.18 37.93 0.27 0.84 16 5 O -0.37 -5.01 11.65 -35.23 -0.41 -5.43 16 6 C 0.06 0.74 6.10 37.93 0.23 0.97 16 7 C -0.14 -1.87 2.20 -90.21 -0.20 -2.07 16 8 H 0.11 1.21 7.44 -51.93 -0.39 0.82 16 9 C 0.52 9.06 6.95 -10.99 -0.08 8.98 16 10 O -0.55 -11.44 14.69 5.55 0.08 -11.36 16 11 N -0.60 -10.76 2.98 -173.05 -0.52 -11.27 16 12 C 0.10 1.51 6.00 -3.71 -0.02 1.49 16 13 C -0.14 -2.31 6.08 -26.61 -0.16 -2.47 16 14 C -0.11 -2.46 4.96 -26.69 -0.13 -2.59 16 15 C 0.04 0.96 2.23 -91.89 -0.21 0.75 16 16 H 0.03 0.78 8.14 -51.92 -0.42 0.35 16 17 C -0.51 -13.78 8.57 -34.44 -0.30 -14.07 16 18 H 0.06 1.51 7.75 -52.49 -0.41 1.11 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.68 11.31 55.43 0.63 -24.05 16 21 Si 0.89 20.93 29.54 -169.99 -5.02 15.90 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 25 C 0.12 2.49 5.63 -3.95 -0.02 2.47 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.88 7.87 -51.93 -0.41 0.47 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 1.12 6.57 -51.93 -0.34 0.78 16 32 H 0.07 1.00 7.86 -51.93 -0.41 0.59 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.87 4.01 -51.93 -0.21 0.66 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 2.40 6.04 -51.93 -0.31 2.09 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.08 1.82 7.01 -51.93 -0.36 1.45 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 315.73 15.07 4.76 4.76 Total: -1.00 -29.62 315.73 -7.68 -37.30 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.54 Total: 1.04 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -0.67 Total: -6.89 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.11 Total: -35.33 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.33 Total: -16.79 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.62 -7.68 -37.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705282826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.922 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds