Wall clock time and date at job start Mon Mar 30 2020 05:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.45783 * 2 1 4 4 C 1.54477 * 110.51146 * 237.39610 * 2 1 3 5 5 O 1.44429 * 104.80255 * 265.19524 * 4 2 1 6 6 C 1.44420 * 105.27676 * 319.49199 * 5 4 2 7 7 C 1.54476 * 104.80608 * 40.50781 * 6 5 4 8 8 H 1.09000 * 110.50986 * 94.66401 * 7 6 5 9 9 C 1.50695 * 110.51365 * 217.38015 * 7 6 5 10 10 O 1.21286 * 120.00131 * 114.64198 * 9 7 6 11 11 N 1.34776 * 119.99951 * 294.64065 * 9 7 6 12 12 C 1.46925 * 120.63150 * 0.02562 * 11 9 7 13 13 C 1.53190 * 108.77632 * 126.36885 * 12 11 9 14 14 C 1.53038 * 109.31390 * 54.63472 * 13 12 11 15 15 C 1.53035 * 109.53894 * 298.63523 * 14 13 12 16 16 H 1.09008 * 109.50175 * 301.41460 * 15 14 13 17 17 C 1.50701 * 109.49964 * 181.34935 * 15 14 13 18 18 H 1.07995 * 120.00022 * 239.99892 * 17 15 14 19 19 C 1.37872 * 119.99926 * 60.00105 * 17 15 14 20 20 N 1.31518 * 120.00322 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 119.99992 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47124 * 89.99887 * 21 19 17 23 23 H 1.48505 * 109.47223 * 209.99775 * 21 19 17 24 24 H 1.48504 * 109.47227 * 329.99703 * 21 19 17 25 25 C 1.46928 * 120.62934 * 179.72112 * 11 9 7 26 26 H 1.09002 * 109.46898 * 179.29423 * 1 2 3 27 27 H 1.08996 * 109.46975 * 299.30047 * 1 2 3 28 28 H 1.08997 * 109.46767 * 59.29997 * 1 2 3 29 29 H 1.08997 * 110.37734 * 24.02417 * 4 2 1 30 30 H 1.09004 * 110.37417 * 146.25770 * 4 2 1 31 31 H 1.08999 * 110.37378 * 159.34039 * 6 5 4 32 32 H 1.09002 * 110.36934 * 281.56521 * 6 5 4 33 33 H 1.09002 * 109.58375 * 246.15552 * 12 11 9 34 34 H 1.09005 * 109.58497 * 6.57974 * 12 11 9 35 35 H 1.09002 * 109.49922 * 174.58917 * 13 12 11 36 36 H 1.09007 * 109.49474 * 294.68085 * 13 12 11 37 37 H 1.09001 * 109.45827 * 58.65642 * 14 13 12 38 38 H 1.08997 * 109.45878 * 178.61376 * 14 13 12 39 39 H 0.96994 * 120.00454 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.59061 * 353.41530 * 25 11 9 41 41 H 1.08998 * 109.58834 * 113.84542 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0713 -0.7796 -1.2188 5 8 2.3102 -2.1159 -0.7257 6 6 2.8801 -1.9400 0.5896 7 6 2.0744 -0.7809 1.2171 8 1 1.2534 -1.1690 1.8200 9 6 2.9731 0.0973 2.0489 10 8 3.1740 1.2465 1.7172 11 7 3.5536 -0.3943 3.1615 12 6 3.3202 -1.7844 3.5759 13 6 4.6737 -2.4765 3.7647 14 6 5.5257 -1.6638 4.7424 15 6 5.7733 -0.2675 4.1671 16 1 6.2746 -0.3547 3.2031 17 6 6.6399 0.5207 5.1151 18 1 6.2733 1.4424 5.5423 19 6 7.9007 0.0653 5.4371 20 7 8.3475 -1.0569 4.9166 21 14 8.9746 1.0419 6.6128 22 1 8.7256 0.5873 8.0044 23 1 10.4040 0.8289 6.2708 24 1 8.6481 2.4861 6.4979 25 6 4.4371 0.4479 3.9794 26 1 -0.3633 -1.0276 -0.0127 27 1 -0.3633 0.5029 0.8962 28 1 -0.3633 0.5247 -0.8836 29 1 1.3302 -0.7969 -2.0179 30 1 3.0001 -0.3325 -1.5733 31 1 2.7602 -2.8485 1.1797 32 1 3.9344 -1.6739 0.5137 33 1 2.7687 -1.7978 4.5160 34 1 2.7483 -2.3038 2.8069 35 1 4.5174 -3.4785 4.1643 36 1 5.1854 -2.5430 2.8045 37 1 5.0023 -1.5768 5.6945 38 1 6.4800 -2.1671 4.8975 39 1 9.2343 -1.3775 5.1434 40 1 4.6020 1.4008 3.4767 41 1 3.9787 0.6206 4.9532 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705282826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:48 Heat of formation + Delta-G solvation = -111.775649 kcal Electronic energy + Delta-G solvation = -21576.613603 eV Core-core repulsion = 18455.062967 eV Total energy + Delta-G solvation = -3121.550636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.81522 -39.86197 -38.34938 -35.45197 -34.38343 -33.16709 -32.33684 -30.81402 -27.37354 -27.03144 -26.37968 -24.14199 -23.38401 -22.25961 -20.99282 -19.73343 -18.77115 -18.14927 -17.45020 -16.81371 -16.72985 -16.43051 -16.03571 -15.60439 -15.09476 -15.04768 -14.64357 -14.45890 -14.08403 -13.80836 -13.72744 -13.48362 -13.30308 -13.01468 -12.84947 -12.71258 -12.56842 -12.01239 -11.98914 -11.88063 -11.83839 -11.70494 -11.58966 -11.24584 -10.89105 -10.79480 -10.70488 -10.43533 -9.53743 -8.12105 -6.27378 1.39912 1.41332 1.50871 1.54592 2.01554 2.42506 2.92323 3.14646 3.33365 3.55504 3.73110 3.96409 4.05654 4.09840 4.19046 4.23989 4.34766 4.50097 4.56520 4.60207 4.67963 4.71160 4.74060 4.80902 4.85532 4.85704 4.95338 5.01216 5.11820 5.17583 5.27028 5.33778 5.46593 5.54115 5.60167 5.71344 5.91772 6.12877 6.33081 6.50756 6.82032 7.14042 7.41056 8.91573 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033937 B = 0.004794 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.853681 B = 5839.126675 C = 6100.620544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.121 4.121 3 H 0.081 0.919 4 C 0.046 3.954 5 O -0.378 6.378 6 C 0.058 3.942 7 C -0.132 4.132 8 H 0.137 0.863 9 C 0.511 3.489 10 O -0.589 6.589 11 N -0.603 5.603 12 C 0.103 3.897 13 C -0.128 4.128 14 C -0.106 4.106 15 C 0.041 3.959 16 H -0.015 1.015 17 C -0.539 4.539 18 H 0.051 0.949 19 C 0.018 3.982 20 N -0.913 5.913 21 Si 0.954 3.046 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.130 3.870 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.050 0.950 31 H 0.129 0.871 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.062 0.938 39 H 0.262 0.738 40 H 0.051 0.949 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.591 -4.970 -6.877 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.140 4.140 3 H 0.100 0.900 4 C -0.030 4.030 5 O -0.297 6.297 6 C -0.019 4.019 7 C -0.153 4.153 8 H 0.155 0.845 9 C 0.300 3.700 10 O -0.471 6.471 11 N -0.334 5.334 12 C -0.019 4.019 13 C -0.166 4.166 14 C -0.144 4.144 15 C 0.022 3.978 16 H 0.003 0.997 17 C -0.577 4.577 18 H 0.070 0.930 19 C -0.181 4.181 20 N -0.552 5.552 21 Si 0.780 3.220 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.197 1.197 25 C 0.008 3.992 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.138 0.862 30 H 0.068 0.932 31 H 0.147 0.853 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.378 -4.699 -7.146 17.596 hybrid contribution 1.452 1.008 0.844 1.959 sum -13.927 -3.690 -6.301 15.725 Atomic orbital electron populations 1.21766 0.91510 1.02991 1.02740 1.22542 0.98635 1.00352 0.92456 0.90033 1.23647 1.00585 0.81866 0.96901 1.89104 1.82875 1.26874 1.30849 1.23530 0.95740 0.98371 0.84278 1.22804 0.98736 0.96146 0.97599 0.84480 1.20992 0.80583 0.87802 0.80657 1.90619 1.64439 1.20863 1.71130 1.48337 1.46069 1.14074 1.24940 1.22155 0.97668 0.79724 1.02303 1.21929 0.95444 0.99649 0.99611 1.21424 0.99539 0.96755 0.96724 1.18790 0.90566 0.94000 0.94463 0.99731 1.21429 1.00575 1.07979 1.27755 0.93023 1.25667 0.98836 0.95956 0.97619 1.70002 1.18503 1.21890 1.44768 0.85614 0.77856 0.79107 0.79432 1.19589 1.20951 1.19744 1.21465 0.90832 0.93579 0.93337 0.90987 0.92500 0.90849 0.86234 0.93178 0.85321 0.93881 0.89598 0.86952 0.88918 0.93573 0.94303 0.91922 0.92919 0.93042 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.95 71.98 0.64 -1.55 16 2 C -0.12 -2.77 3.30 -9.78 -0.03 -2.80 16 3 H 0.08 2.35 6.50 -2.39 -0.02 2.34 16 4 C 0.05 1.00 7.18 72.48 0.52 1.52 16 5 O -0.38 -9.16 11.65 -148.98 -1.74 -10.90 16 6 C 0.06 1.36 6.10 72.48 0.44 1.81 16 7 C -0.13 -3.19 2.20 -10.53 -0.02 -3.22 16 8 H 0.14 2.51 7.44 -2.39 -0.02 2.50 16 9 C 0.51 17.70 6.95 87.66 0.61 18.31 16 10 O -0.59 -25.41 14.69 -3.05 -0.04 -25.46 16 11 N -0.60 -21.25 2.98 -819.80 -2.44 -23.69 16 12 C 0.10 2.74 6.00 86.36 0.52 3.25 16 13 C -0.13 -4.15 6.08 30.67 0.19 -3.96 16 14 C -0.11 -4.68 4.96 30.62 0.15 -4.53 16 15 C 0.04 2.06 2.23 -11.62 -0.03 2.03 16 16 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 17 C -0.54 -29.84 8.57 25.60 0.22 -29.62 16 18 H 0.05 2.83 7.75 -2.91 -0.02 2.81 16 19 C 0.02 1.02 5.30 84.65 0.45 1.47 16 20 N -0.91 -52.07 11.31 21.45 0.24 -51.83 16 21 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 25 C 0.13 5.70 5.63 86.21 0.49 6.18 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.12 1.91 7.87 -2.39 -0.02 1.89 16 30 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.13 2.29 6.57 -2.39 -0.02 2.27 16 32 H 0.04 1.24 7.86 -2.39 -0.02 1.22 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.11 2.14 4.01 -2.38 -0.01 2.13 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 3.20 6.04 -2.39 -0.01 3.18 16 39 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 40 H 0.05 2.50 7.01 -2.39 -0.02 2.48 16 41 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -67.76 315.73 3.20 -64.57 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.01 Total: 12.86 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 4.15 Total: -11.11 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -2.20 Total: -75.52 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -1.78 Total: -36.36 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -67.76 3.20 -64.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705282826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.211 kcal (2) G-P(sol) polarization free energy of solvation -67.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds