Wall clock time and date at job start Mon Mar 30 2020 05:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.56645 * 2 1 4 4 C 1.54478 * 110.50899 * 237.31955 * 2 1 3 5 5 O 1.44424 * 104.80487 * 217.37769 * 4 2 1 6 6 C 1.44424 * 105.27166 * 40.51004 * 5 4 2 7 7 C 1.54477 * 104.80651 * 319.49017 * 6 5 4 8 8 H 1.08998 * 110.51085 * 265.19605 * 7 6 5 9 9 C 1.50700 * 110.50903 * 142.62202 * 7 6 5 10 10 O 1.21277 * 120.00571 * 335.18859 * 9 7 6 11 11 N 1.34777 * 119.99658 * 155.19099 * 9 7 6 12 12 C 1.46929 * 120.63519 * 355.25988 * 11 9 7 13 13 C 1.53186 * 108.89534 * 126.29824 * 12 11 9 14 14 C 1.53353 * 109.14907 * 54.58023 * 13 12 11 15 15 C 1.53038 * 109.60902 * 298.71089 * 14 13 12 16 16 H 1.09003 * 109.50006 * 301.42524 * 15 14 13 17 17 C 1.50702 * 109.52763 * 181.33984 * 15 14 13 18 18 H 1.07996 * 119.99821 * 275.15263 * 17 15 14 19 19 C 1.37873 * 119.99883 * 95.14604 * 17 15 14 20 20 N 1.31512 * 120.00007 * 184.95696 * 19 17 15 21 21 Si 1.86805 * 120.00155 * 4.96132 * 19 17 15 22 22 H 1.48505 * 109.46969 * 84.91180 * 21 19 17 23 23 H 1.48495 * 109.47130 * 204.91748 * 21 19 17 24 24 H 1.48503 * 109.46743 * 324.91712 * 21 19 17 25 25 C 1.46932 * 120.63216 * 175.23908 * 11 9 7 26 26 H 1.08999 * 109.47504 * 302.18894 * 1 2 3 27 27 H 1.09008 * 109.47500 * 62.18115 * 1 2 3 28 28 H 1.09002 * 109.47617 * 182.18438 * 1 2 3 29 29 H 1.09003 * 110.37408 * 98.54943 * 4 2 1 30 30 H 1.09000 * 110.37305 * 336.20706 * 4 2 1 31 31 H 1.09005 * 110.37182 * 200.65561 * 6 5 4 32 32 H 1.09000 * 110.46482 * 78.37256 * 6 5 4 33 33 H 1.08996 * 109.58725 * 246.15902 * 12 11 9 34 34 H 1.09005 * 109.58043 * 6.44040 * 12 11 9 35 35 H 1.08998 * 109.49985 * 174.65934 * 13 12 11 36 36 H 1.09005 * 109.49628 * 294.75823 * 13 12 11 37 37 H 1.08999 * 109.41615 * 178.67667 * 14 13 12 38 38 H 1.08997 * 109.43377 * 58.76044 * 14 13 12 39 39 H 0.96995 * 120.00105 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.58135 * 353.41685 * 25 11 9 41 41 H 1.08996 * 109.58587 * 113.69711 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0712 -0.7812 -1.2178 5 8 3.2397 -1.4714 -0.7239 6 6 2.8756 -1.9422 0.5920 7 6 2.0713 -0.7813 1.2180 8 1 2.7214 -0.1485 1.8222 9 6 0.9343 -1.3154 2.0506 10 8 0.4747 -2.4131 1.8166 11 7 0.4282 -0.5731 3.0552 12 6 1.0400 0.7125 3.4180 13 6 -0.0403 1.7984 3.4009 14 6 -1.1978 1.3707 4.3114 15 6 -1.8091 0.0691 3.7878 16 1 -2.1602 0.2169 2.7665 17 6 -2.9672 -0.3320 4.6648 18 1 -2.7903 -0.8974 5.5677 19 6 -4.2526 0.0230 4.3143 20 7 -5.2524 -0.2413 5.1268 21 14 -4.5739 0.8792 2.6854 22 1 -4.7117 -0.1367 1.6110 23 1 -5.8262 1.6714 2.7813 24 1 -3.4391 1.7833 2.3692 25 6 -0.7462 -1.0339 3.8084 26 1 -0.3634 0.5474 0.8697 27 1 -0.3634 0.4796 -0.9089 28 1 -0.3634 -1.0269 0.0392 29 1 2.3464 -0.0939 -2.0178 30 1 1.3284 -1.4970 -1.5701 31 1 3.7688 -2.1468 1.1825 32 1 2.2568 -2.8366 0.5191 33 1 1.4723 0.6428 4.4161 34 1 1.8201 0.9618 2.6986 35 1 0.3816 2.7371 3.7599 36 1 -0.4079 1.9299 2.3832 37 1 -1.9587 2.1511 4.3209 38 1 -0.8247 1.2153 5.3236 39 1 -6.1567 0.0081 4.8801 40 1 -1.1465 -1.9358 3.3451 41 1 -0.4591 -1.2485 4.8377 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705282829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:50 Heat of formation + Delta-G solvation = -111.560885 kcal Electronic energy + Delta-G solvation = -21999.498566 eV Core-core repulsion = 18877.957243 eV Total energy + Delta-G solvation = -3121.541323 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.92523 -39.83724 -38.30174 -35.40633 -34.56676 -33.41992 -32.24310 -31.01948 -27.34564 -27.19830 -26.46123 -24.12879 -23.22793 -22.47924 -20.88625 -19.73904 -18.85388 -18.40485 -17.48387 -17.09077 -16.59704 -16.22573 -15.95446 -15.77913 -15.30626 -15.21818 -14.62118 -14.47466 -14.18321 -14.10913 -13.89187 -13.51390 -13.25899 -13.10453 -12.97416 -12.88732 -12.44642 -12.13924 -11.94200 -11.90179 -11.80809 -11.67430 -11.57131 -11.37309 -11.11557 -10.79351 -10.71228 -10.59287 -9.53762 -8.32974 -6.36256 1.29150 1.31488 1.41032 1.57573 2.03289 2.30266 2.91056 3.03927 3.43795 3.57679 3.69262 3.83550 4.03081 4.12065 4.15255 4.22320 4.28927 4.38972 4.43289 4.55678 4.60228 4.67549 4.69000 4.78476 4.81741 4.86215 4.89910 4.94298 4.99844 5.05969 5.12805 5.24703 5.27387 5.42170 5.54194 5.67854 5.71492 5.76994 6.26135 6.52295 6.70652 7.18216 7.29353 8.83945 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026781 B = 0.006035 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.261613 B = 4638.701563 C = 4829.810727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.100 4.100 3 H 0.126 0.874 4 C 0.046 3.954 5 O -0.383 6.383 6 C 0.057 3.943 7 C -0.140 4.140 8 H 0.139 0.861 9 C 0.522 3.478 10 O -0.591 6.591 11 N -0.606 5.606 12 C 0.102 3.898 13 C -0.131 4.131 14 C -0.110 4.110 15 C 0.009 3.991 16 H 0.025 0.975 17 C -0.515 4.515 18 H 0.034 0.966 19 C 0.015 3.985 20 N -0.947 5.947 21 Si 0.937 3.063 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.238 1.238 25 C 0.134 3.866 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.033 0.967 29 H 0.122 0.878 30 H 0.049 0.951 31 H 0.115 0.885 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.266 0.734 40 H 0.051 0.949 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.468 6.879 -10.600 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.118 4.118 3 H 0.144 0.856 4 C -0.030 4.030 5 O -0.302 6.302 6 C -0.020 4.020 7 C -0.161 4.161 8 H 0.157 0.843 9 C 0.311 3.689 10 O -0.473 6.473 11 N -0.337 5.337 12 C -0.019 4.019 13 C -0.169 4.169 14 C -0.148 4.148 15 C -0.011 4.011 16 H 0.043 0.957 17 C -0.554 4.554 18 H 0.053 0.947 19 C -0.182 4.182 20 N -0.587 5.587 21 Si 0.761 3.239 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.161 1.161 25 C 0.012 3.988 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.052 0.948 29 H 0.140 0.860 30 H 0.068 0.932 31 H 0.133 0.867 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.135 0.865 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.253 6.303 -10.783 22.118 hybrid contribution -1.552 -0.267 0.090 1.577 sum 16.702 6.036 -10.693 20.730 Atomic orbital electron populations 1.22026 0.95180 1.01371 1.03247 1.22490 0.95565 1.01471 0.92323 0.85568 1.23679 0.87312 0.95179 0.96836 1.89088 1.35790 1.74220 1.31061 1.23385 0.99587 0.95230 0.83777 1.22927 0.95772 0.99710 0.97715 0.84318 1.20766 0.84254 0.84163 0.79684 1.90658 1.63335 1.22788 1.70477 1.48385 1.30015 1.21997 1.33296 1.22098 0.95882 0.81102 1.02829 1.22059 0.95742 0.99036 1.00070 1.21740 0.96995 0.97045 0.99069 1.19382 0.92846 0.93360 0.95473 0.95652 1.21190 0.91329 1.34623 1.08236 0.94746 1.25864 0.95915 0.96220 1.00200 1.70042 1.00375 1.49766 1.38553 0.85893 0.78352 0.79526 0.80109 1.20457 1.21225 1.16091 1.21466 0.85103 0.97645 0.94625 0.92445 0.90100 0.94807 0.86005 0.93222 0.86654 0.92868 0.89874 0.86511 0.87959 0.92193 0.94017 0.92668 0.92546 0.93026 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 7.97 71.98 0.57 -3.40 16 2 C -0.10 -1.87 3.72 -9.78 -0.04 -1.90 16 3 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 4 C 0.05 0.88 7.18 72.48 0.52 1.41 16 5 O -0.38 -8.74 11.65 -148.98 -1.74 -10.48 16 6 C 0.06 1.31 7.13 72.48 0.52 1.82 16 7 C -0.14 -2.99 2.68 -10.53 -0.03 -3.02 16 8 H 0.14 1.98 6.19 -2.39 -0.01 1.97 16 9 C 0.52 16.37 4.71 87.66 0.41 16.78 16 10 O -0.59 -24.19 14.41 -3.02 -0.04 -24.23 16 11 N -0.61 -18.90 2.55 -818.90 -2.09 -20.98 16 12 C 0.10 2.20 6.27 86.36 0.54 2.75 16 13 C -0.13 -3.22 6.11 30.77 0.19 -3.03 16 14 C -0.11 -3.99 5.15 30.73 0.16 -3.84 16 15 C 0.01 0.40 1.92 -11.46 -0.02 0.38 16 16 H 0.03 1.17 5.29 -2.39 -0.01 1.15 16 17 C -0.52 -28.88 8.87 25.60 0.23 -28.66 16 18 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 19 C 0.02 0.89 5.47 84.65 0.46 1.35 16 20 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 21 Si 0.94 44.21 26.99 68.60 1.85 46.06 16 22 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 24 H -0.24 -10.06 6.81 99.48 0.68 -9.38 16 25 C 0.13 5.50 5.69 86.36 0.49 6.00 16 26 H 0.06 1.56 6.14 -2.39 -0.01 1.55 16 27 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.03 1.07 6.85 -2.39 -0.02 1.05 16 29 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.08 7.87 -2.39 -0.02 1.07 16 31 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.05 1.53 6.84 -2.39 -0.02 1.51 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.12 1.62 5.44 -2.38 -0.01 1.60 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.51 6.82 -2.38 -0.02 1.50 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.05 2.43 7.03 -2.39 -0.02 2.42 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -72.75 311.56 3.28 -69.48 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.98 Total: 12.32 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 4.01 Total: -13.36 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -1.79 Total: -79.79 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.78 Total: -34.71 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.85 Total: 46.06 kcal Total: -72.75 3.28 -69.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705282829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.083 kcal (2) G-P(sol) polarization free energy of solvation -72.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds