Wall clock time and date at job start Mon Mar 30 2020 05:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47138 * 2 1 4 4 C 1.53005 * 109.46931 * 119.99729 * 2 1 3 5 5 C 1.50705 * 109.47158 * 296.83480 * 4 2 1 6 6 H 1.07996 * 119.99814 * 4.28057 * 5 4 2 7 7 C 1.37880 * 119.99672 * 184.27620 * 5 4 2 8 8 N 1.31513 * 120.00037 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99660 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47073 * 60.00292 * 9 7 5 11 11 H 1.48497 * 109.47285 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47384 * 300.00441 * 9 7 5 13 13 N 1.46895 * 109.47388 * 239.99450 * 2 1 3 14 14 C 1.46821 * 110.99636 * 62.09742 * 13 2 1 15 15 C 1.53962 * 109.06313 * 182.21173 * 14 13 2 16 16 H 1.09008 * 112.74019 * 170.22528 * 15 14 13 17 17 C 1.54708 * 107.21286 * 45.43086 * 15 14 13 18 18 C 1.53985 * 106.10154 * 273.51547 * 17 15 14 19 19 C 1.54710 * 106.16653 * 359.95495 * 18 17 15 20 20 H 1.09003 * 112.84963 * 210.46966 * 19 18 17 21 21 C 1.46819 * 111.00282 * 187.77539 * 13 2 1 22 22 C 1.55300 * 107.08494 * 294.97469 * 15 14 13 23 23 C 1.50700 * 111.09783 * 188.64571 * 22 15 14 24 24 O 1.20823 * 120.00198 * 359.97438 * 23 22 15 25 25 O 1.34230 * 119.99854 * 180.02562 * 23 22 15 26 26 H 1.09002 * 109.47051 * 300.00473 * 1 2 3 27 27 H 1.09006 * 109.46870 * 59.99768 * 1 2 3 28 28 H 1.08993 * 109.47019 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47065 * 56.83784 * 4 2 1 30 30 H 1.09004 * 109.47227 * 176.83749 * 4 2 1 31 31 H 0.97002 * 119.99258 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.53890 * 62.33415 * 14 13 2 33 33 H 1.08999 * 109.60558 * 302.13063 * 14 13 2 34 34 H 1.08998 * 110.12894 * 154.35748 * 17 15 14 35 35 H 1.08994 * 110.18272 * 32.69994 * 17 15 14 36 36 H 1.08995 * 110.12252 * 119.15522 * 18 17 15 37 37 H 1.09005 * 110.12074 * 240.76225 * 18 17 15 38 38 H 1.09003 * 109.54298 * 297.66214 * 21 13 2 39 39 H 1.08997 * 109.53615 * 57.83175 * 21 13 2 40 40 H 1.09006 * 111.09270 * 312.73205 * 22 15 14 41 41 H 0.96693 * 116.99884 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6027 0.0331 2.4785 6 1 0.9619 0.8971 2.3824 7 6 2.0207 -0.3799 3.7258 8 7 2.8014 -1.4317 3.8428 9 14 1.4781 0.5547 5.2495 10 1 -0.0038 0.5325 5.3422 11 1 2.0597 -0.0858 6.4564 12 1 1.9475 1.9608 5.1611 13 7 2.0197 -0.6926 -1.1993 14 6 1.5903 0.0015 -2.4198 15 6 2.0789 -0.7900 -3.6467 16 1 1.6523 -0.4248 -4.5810 17 6 1.7633 -2.2817 -3.3846 18 6 2.9626 -2.8400 -2.5967 19 6 3.9484 -1.6608 -2.4197 20 1 4.9891 -1.9819 -2.3761 21 6 3.4755 -0.8748 -1.1441 22 6 3.6311 -0.7420 -3.6321 23 6 4.2034 -1.3092 -4.9056 24 8 3.4652 -1.7236 -5.7676 25 8 5.5333 -1.3549 -5.0818 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6311 -1.7312 1.2781 30 1 3.1285 -0.7706 1.2215 31 1 3.0957 -1.7220 4.7203 32 1 2.0179 1.0040 -2.4387 33 1 0.5026 0.0687 -2.4388 34 1 1.6549 -2.8138 -4.3297 35 1 0.8512 -2.3751 -2.7953 36 1 2.6349 -3.2043 -1.6231 37 1 3.4377 -3.6450 -3.1574 38 1 3.9643 0.0992 -1.1217 39 1 3.7389 -1.4356 -0.2474 40 1 3.9906 0.2727 -3.4603 41 1 5.8532 -1.7277 -5.9146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708475859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:07 Heat of formation + Delta-G solvation = -96.240554 kcal Electronic energy + Delta-G solvation = -21591.223010 eV Core-core repulsion = 18470.346027 eV Total energy + Delta-G solvation = -3120.876983 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.04317 -39.23367 -36.30119 -35.70552 -32.80335 -31.05075 -30.45785 -29.32334 -27.05835 -25.09192 -24.16545 -22.84924 -21.66881 -19.82250 -19.23778 -18.75039 -18.00894 -17.06522 -16.38346 -15.91148 -15.25137 -14.75993 -14.47260 -14.07202 -13.80959 -13.56955 -13.13479 -13.00316 -12.44060 -12.39162 -12.00145 -11.65439 -11.51684 -11.36665 -11.21251 -10.98105 -10.91969 -10.87374 -10.71937 -10.61376 -10.50586 -10.21803 -10.02607 -9.96759 -9.83521 -9.17823 -9.03180 -8.33811 -7.64791 -6.00789 -4.02170 2.17167 3.00068 3.32363 3.37323 3.39241 4.30376 4.42988 4.49161 4.66396 4.85406 5.19191 5.32232 5.35357 5.42335 5.45020 5.60083 5.64863 5.71825 5.84351 5.92097 6.03311 6.06870 6.14062 6.20591 6.25343 6.32824 6.34821 6.41356 6.48531 6.51227 6.70698 6.74405 6.92580 7.10166 7.53700 7.62952 7.81688 7.85500 7.86371 8.06315 8.43186 9.03615 9.61178 11.10539 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.036332 B = 0.004571 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.478226 B = 6124.291619 C = 6444.187166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.088 3.912 3 H 0.026 0.974 4 C 0.030 3.970 5 C -0.518 4.518 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.534 5.534 14 C 0.059 3.941 15 C -0.074 4.074 16 H 0.091 0.909 17 C -0.102 4.102 18 C -0.109 4.109 19 C -0.082 4.082 20 H 0.096 0.904 21 C 0.063 3.937 22 C -0.091 4.091 23 C 0.491 3.509 24 O -0.515 6.515 25 O -0.517 6.517 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.054 0.946 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.261 0.739 32 H 0.026 0.974 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.028 0.972 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.448 0.400 -15.730 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.019 4.019 3 H 0.044 0.956 4 C -0.007 4.007 5 C -0.557 4.557 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.259 5.259 14 C -0.069 4.069 15 C -0.093 4.093 16 H 0.109 0.891 17 C -0.139 4.139 18 C -0.146 4.146 19 C -0.101 4.101 20 H 0.114 0.886 21 C -0.065 4.065 22 C -0.110 4.110 23 C 0.334 3.666 24 O -0.403 6.403 25 O -0.329 6.329 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.966 -0.114 -15.450 15.575 hybrid contribution 0.430 1.125 0.318 1.245 sum 2.395 1.011 -15.132 15.353 Atomic orbital electron populations 1.21754 0.95356 1.01582 1.00010 1.21801 0.94983 0.95200 0.89919 0.95570 1.19222 0.96421 0.95844 0.89247 1.21172 1.30332 1.12953 0.91205 0.92701 1.24973 0.95166 0.95107 0.98988 1.69950 1.34819 1.24766 1.23783 0.86697 0.78953 0.80012 0.82559 1.20255 1.21337 1.20371 1.61606 1.11340 1.51131 1.01865 1.22293 1.00778 0.94203 0.89600 1.22408 0.90939 0.97863 0.98050 0.89090 1.22056 0.99341 0.93521 0.98996 1.22152 0.95103 0.96021 1.01344 1.23146 0.99521 0.94983 0.92478 0.88578 1.22872 0.87948 0.98355 0.97284 1.22428 0.97392 1.00928 0.90258 1.23471 0.79640 0.74844 0.88686 1.90678 1.60394 1.44651 1.44583 1.84576 1.25454 1.77474 1.45389 0.91649 0.94990 0.92663 0.95978 0.95942 0.92983 0.95569 0.90012 0.92608 0.90557 0.89877 0.93507 0.95355 0.88363 0.87530 0.73694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.81 37.16 0.33 -2.05 16 2 C 0.09 1.74 2.15 -67.71 -0.15 1.60 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C 0.03 0.73 4.09 -27.88 -0.11 0.62 16 5 C -0.52 -14.03 8.47 -34.44 -0.29 -14.32 16 6 H 0.05 1.45 6.78 -52.49 -0.36 1.09 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.53 -8.97 3.33 -223.41 -0.74 -9.71 16 14 C 0.06 0.84 4.61 -3.37 -0.02 0.83 16 15 C -0.07 -0.96 3.24 -88.00 -0.29 -1.25 16 16 H 0.09 1.14 7.91 -51.92 -0.41 0.73 16 17 C -0.10 -1.39 5.37 -25.32 -0.14 -1.53 16 18 C -0.11 -1.51 5.62 -25.32 -0.14 -1.65 16 19 C -0.08 -1.11 3.88 -86.22 -0.33 -1.44 16 20 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 21 C 0.06 1.02 4.45 -1.64 -0.01 1.02 16 22 C -0.09 -1.14 2.74 -89.28 -0.25 -1.38 16 23 C 0.49 6.06 7.23 36.01 0.26 6.32 16 24 O -0.52 -7.54 16.00 -18.75 -0.30 -7.84 16 25 O -0.52 -5.09 13.42 -39.26 -0.53 -5.62 16 26 H 0.06 1.28 6.74 -51.93 -0.35 0.93 16 27 H 0.03 0.50 6.40 -51.93 -0.33 0.16 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.02 0.58 6.08 -51.93 -0.32 0.27 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 33 H 0.08 1.13 6.25 -51.93 -0.32 0.81 16 34 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 35 H 0.08 1.10 7.76 -51.93 -0.40 0.70 16 36 H 0.08 1.29 7.79 -51.93 -0.40 0.89 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.46 8.07 -51.93 -0.42 0.04 16 39 H 0.10 1.82 6.00 -51.93 -0.31 1.51 16 40 H 0.11 1.25 7.93 -51.93 -0.41 0.84 16 41 H 0.40 2.19 9.10 45.56 0.41 2.61 16 LS Contribution 314.61 15.07 4.74 4.74 Total: -1.00 -30.31 314.61 -8.03 -38.34 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.69 Total: 0.99 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.23 Total: -11.70 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.01 Total: -35.14 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.83 Total: -13.45 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.31 -8.03 -38.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708475859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.903 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds