Wall clock time and date at job start Mon Mar 30 2020 05:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47138 * 2 1 4 4 C 1.53005 * 109.46931 * 119.99729 * 2 1 3 5 5 C 1.50705 * 109.47158 * 296.83480 * 4 2 1 6 6 H 1.07996 * 119.99814 * 4.28057 * 5 4 2 7 7 C 1.37880 * 119.99672 * 184.27620 * 5 4 2 8 8 N 1.31513 * 120.00037 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99660 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47073 * 60.00292 * 9 7 5 11 11 H 1.48497 * 109.47285 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47384 * 300.00441 * 9 7 5 13 13 N 1.46895 * 109.47388 * 239.99450 * 2 1 3 14 14 C 1.46821 * 110.99636 * 62.09742 * 13 2 1 15 15 C 1.53962 * 109.06313 * 182.21173 * 14 13 2 16 16 H 1.09008 * 112.74019 * 170.22528 * 15 14 13 17 17 C 1.54708 * 107.21286 * 45.43086 * 15 14 13 18 18 C 1.53985 * 106.10154 * 273.51547 * 17 15 14 19 19 C 1.54710 * 106.16653 * 359.95495 * 18 17 15 20 20 H 1.09003 * 112.84963 * 210.46966 * 19 18 17 21 21 C 1.46819 * 111.00282 * 187.77539 * 13 2 1 22 22 C 1.55300 * 107.08494 * 294.97469 * 15 14 13 23 23 C 1.50700 * 111.09783 * 188.64571 * 22 15 14 24 24 O 1.20823 * 120.00198 * 359.97438 * 23 22 15 25 25 O 1.34230 * 119.99854 * 180.02562 * 23 22 15 26 26 H 1.09002 * 109.47051 * 300.00473 * 1 2 3 27 27 H 1.09006 * 109.46870 * 59.99768 * 1 2 3 28 28 H 1.08993 * 109.47019 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47065 * 56.83784 * 4 2 1 30 30 H 1.09004 * 109.47227 * 176.83749 * 4 2 1 31 31 H 0.97002 * 119.99258 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.53890 * 62.33415 * 14 13 2 33 33 H 1.08999 * 109.60558 * 302.13063 * 14 13 2 34 34 H 1.08998 * 110.12894 * 154.35748 * 17 15 14 35 35 H 1.08994 * 110.18272 * 32.69994 * 17 15 14 36 36 H 1.08995 * 110.12252 * 119.15522 * 18 17 15 37 37 H 1.09005 * 110.12074 * 240.76225 * 18 17 15 38 38 H 1.09003 * 109.54298 * 297.66214 * 21 13 2 39 39 H 1.08997 * 109.53615 * 57.83175 * 21 13 2 40 40 H 1.09006 * 111.09270 * 312.73205 * 22 15 14 41 41 H 0.96693 * 116.99884 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6027 0.0331 2.4785 6 1 0.9619 0.8971 2.3824 7 6 2.0207 -0.3799 3.7258 8 7 2.8014 -1.4317 3.8428 9 14 1.4781 0.5547 5.2495 10 1 -0.0038 0.5325 5.3422 11 1 2.0597 -0.0858 6.4564 12 1 1.9475 1.9608 5.1611 13 7 2.0197 -0.6926 -1.1993 14 6 1.5903 0.0015 -2.4198 15 6 2.0789 -0.7900 -3.6467 16 1 1.6523 -0.4248 -4.5810 17 6 1.7633 -2.2817 -3.3846 18 6 2.9626 -2.8400 -2.5967 19 6 3.9484 -1.6608 -2.4197 20 1 4.9891 -1.9819 -2.3761 21 6 3.4755 -0.8748 -1.1441 22 6 3.6311 -0.7420 -3.6321 23 6 4.2034 -1.3092 -4.9056 24 8 3.4652 -1.7236 -5.7676 25 8 5.5333 -1.3549 -5.0818 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6311 -1.7312 1.2781 30 1 3.1285 -0.7706 1.2215 31 1 3.0957 -1.7220 4.7203 32 1 2.0179 1.0040 -2.4387 33 1 0.5026 0.0687 -2.4388 34 1 1.6549 -2.8138 -4.3297 35 1 0.8512 -2.3751 -2.7953 36 1 2.6349 -3.2043 -1.6231 37 1 3.4377 -3.6450 -3.1574 38 1 3.9643 0.0992 -1.1217 39 1 3.7389 -1.4356 -0.2474 40 1 3.9906 0.2727 -3.4603 41 1 5.8532 -1.7277 -5.9146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708475859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:06 Heat of formation + Delta-G solvation = -115.068726 kcal Electronic energy + Delta-G solvation = -21592.039461 eV Core-core repulsion = 18470.346027 eV Total energy + Delta-G solvation = -3121.693434 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.10971 -40.32527 -37.49329 -36.90309 -34.77137 -32.26928 -32.04392 -30.40528 -28.85951 -26.45744 -25.55690 -24.46559 -22.78419 -21.00428 -20.73542 -19.90502 -18.93053 -18.69070 -17.83479 -16.98724 -16.59892 -16.41200 -15.82938 -15.39572 -15.16048 -15.00996 -14.36861 -14.24241 -13.98469 -13.66582 -13.55176 -13.22638 -13.00197 -12.65962 -12.63045 -12.54272 -12.35977 -12.23091 -12.04260 -11.91560 -11.79733 -11.66851 -11.54509 -11.22133 -11.10538 -11.04834 -10.81592 -10.46303 -9.02860 -8.15034 -6.23661 1.21989 1.42224 1.44134 1.51710 2.14877 2.43141 3.02922 3.19080 3.37569 3.53576 3.75745 4.03729 4.26993 4.31521 4.35252 4.41200 4.45463 4.52057 4.60964 4.62700 4.73743 4.81831 4.88166 4.94739 4.99053 5.04145 5.12071 5.20639 5.22521 5.30038 5.37395 5.46758 5.55338 5.60680 5.64372 5.77737 5.84399 6.18573 6.44402 6.45154 6.92610 7.05082 7.44322 8.96655 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.036332 B = 0.004571 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.478226 B = 6124.291619 C = 6444.187166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.098 3.902 3 H 0.020 0.980 4 C 0.040 3.960 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.958 3.042 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.538 5.538 14 C 0.060 3.940 15 C -0.067 4.067 16 H 0.105 0.895 17 C -0.098 4.098 18 C -0.108 4.108 19 C -0.072 4.072 20 H 0.109 0.891 21 C 0.064 3.936 22 C -0.088 4.088 23 C 0.500 3.500 24 O -0.539 6.539 25 O -0.512 6.512 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.046 0.954 29 H -0.011 1.011 30 H 0.000 1.000 31 H 0.261 0.739 32 H 0.035 0.965 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.029 0.971 39 H 0.064 0.936 40 H 0.120 0.880 41 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.306 1.656 -17.095 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.009 4.009 3 H 0.038 0.962 4 C 0.003 3.997 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.783 3.217 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.263 5.263 14 C -0.067 4.067 15 C -0.085 4.085 16 H 0.123 0.877 17 C -0.136 4.136 18 C -0.146 4.146 19 C -0.091 4.091 20 H 0.127 0.873 21 C -0.064 4.064 22 C -0.107 4.107 23 C 0.343 3.657 24 O -0.429 6.429 25 O -0.326 6.326 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.007 0.993 30 H 0.018 0.982 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.138 0.862 41 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 1.837 1.147 -16.842 16.981 hybrid contribution 0.541 0.688 0.701 1.121 sum 2.378 1.835 -16.141 16.418 Atomic orbital electron populations 1.21658 0.93991 1.01334 1.00952 1.21501 0.95977 0.94138 0.89328 0.96170 1.19030 0.94882 0.94431 0.91389 1.21601 1.30061 1.13122 0.92275 0.92096 1.25862 0.95224 0.95982 1.02392 1.70093 1.36177 1.26461 1.24493 0.85615 0.78833 0.78848 0.78432 1.19305 1.21184 1.19361 1.61526 1.11716 1.51232 1.01856 1.22362 1.01309 0.94523 0.88538 1.22359 0.91476 0.96879 0.97810 0.87738 1.22002 0.98640 0.94259 0.98691 1.22113 0.95588 0.96584 1.00280 1.23062 0.99986 0.94536 0.91498 0.87260 1.22774 0.87752 0.98287 0.97548 1.22365 0.97075 1.01327 0.89951 1.23211 0.80200 0.74197 0.88055 1.90682 1.61145 1.45732 1.45338 1.84519 1.23932 1.77209 1.46922 0.93035 0.91645 0.93478 0.99252 0.98170 0.93005 0.94650 0.89265 0.92434 0.91589 0.92265 0.92489 0.95268 0.91760 0.86226 0.71225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.40 8.81 71.98 0.63 -3.76 16 2 C 0.10 3.92 2.15 44.92 0.10 4.02 16 3 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 4 C 0.04 2.05 4.09 29.85 0.12 2.17 16 5 C -0.53 -29.36 8.47 25.60 0.22 -29.15 16 6 H 0.06 3.22 6.78 -2.91 -0.02 3.20 16 7 C 0.00 0.18 5.46 84.66 0.46 0.64 16 8 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 9 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 N -0.54 -17.99 3.33 -860.73 -2.86 -20.86 16 14 C 0.06 1.59 4.61 86.64 0.40 1.99 16 15 C -0.07 -1.58 3.24 -9.10 -0.03 -1.61 16 16 H 0.10 2.29 7.91 -2.38 -0.02 2.27 16 17 C -0.10 -2.57 5.37 31.51 0.17 -2.40 16 18 C -0.11 -2.95 5.62 31.51 0.18 -2.77 16 19 C -0.07 -1.86 3.88 -7.94 -0.03 -1.89 16 20 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 21 C 0.06 2.11 4.45 87.76 0.39 2.50 16 22 C -0.09 -1.99 2.74 -9.93 -0.03 -2.02 16 23 C 0.50 10.95 7.23 71.24 0.52 11.47 16 24 O -0.54 -14.38 16.00 21.97 0.35 -14.03 16 25 O -0.51 -8.47 13.42 -51.42 -0.69 -9.16 16 26 H 0.05 1.98 6.74 -2.39 -0.02 1.97 16 27 H 0.06 1.91 6.40 -2.38 -0.02 1.89 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 30 H 0.00 0.00 6.08 -2.38 -0.01 -0.01 16 31 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 32 H 0.04 0.90 8.06 -2.38 -0.02 0.88 16 33 H 0.09 2.24 6.25 -2.39 -0.01 2.22 16 34 H 0.06 1.50 7.68 -2.39 -0.02 1.48 16 35 H 0.07 1.86 7.76 -2.39 -0.02 1.84 16 36 H 0.06 1.90 7.79 -2.39 -0.02 1.88 16 37 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.03 0.94 8.07 -2.39 -0.02 0.92 16 39 H 0.06 2.54 6.00 -2.39 -0.01 2.52 16 40 H 0.12 2.45 7.93 -2.38 -0.02 2.43 16 41 H 0.43 3.23 9.10 -74.06 -0.67 2.55 16 Total: -1.00 -65.78 314.61 2.56 -63.22 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.35 Total: 11.63 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 3.10 Total: -20.82 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -2.58 Total: -76.64 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.34 Total: -23.19 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -65.78 2.56 -63.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708475859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.850 kcal (2) G-P(sol) polarization free energy of solvation -65.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds