Wall clock time and date at job start Mon Mar 30 2020 05:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47108 * 2 1 4 4 C 1.53004 * 109.46914 * 240.00302 * 2 1 3 5 5 C 1.50705 * 109.46992 * 62.76853 * 4 2 1 6 6 H 1.08000 * 120.00091 * 5.59326 * 5 4 2 7 7 C 1.37872 * 119.99924 * 185.59629 * 5 4 2 8 8 N 1.31515 * 120.00243 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99919 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46987 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46986 * 119.99836 * 9 7 5 12 12 H 1.48492 * 109.47437 * 240.00069 * 9 7 5 13 13 N 1.46895 * 109.47289 * 120.00418 * 2 1 3 14 14 C 1.46824 * 111.00186 * 174.54232 * 13 2 1 15 15 C 1.53959 * 109.06070 * 182.21684 * 14 13 2 16 16 H 1.09001 * 112.74192 * 171.05011 * 15 14 13 17 17 C 1.54705 * 107.21341 * 46.24322 * 15 14 13 18 18 C 1.53975 * 106.11324 * 274.30142 * 17 15 14 19 19 C 1.57917 * 105.84287 * 359.60712 * 18 17 15 20 20 H 1.09000 * 113.46261 * 210.67773 * 19 18 17 21 21 C 1.46816 * 111.00314 * 300.22581 * 13 2 1 22 22 C 1.55301 * 106.36897 * 295.28449 * 15 14 13 23 23 C 1.50703 * 111.10192 * 188.37276 * 22 15 14 24 24 O 1.20826 * 119.99334 * 359.97438 * 23 22 15 25 25 O 1.34223 * 120.00486 * 180.02562 * 23 22 15 26 26 H 1.09004 * 109.46914 * 299.99398 * 1 2 3 27 27 H 1.08993 * 109.47616 * 59.99429 * 1 2 3 28 28 H 1.09003 * 109.47120 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47107 * 182.76218 * 4 2 1 30 30 H 1.08996 * 109.47333 * 302.76959 * 4 2 1 31 31 H 0.97005 * 119.99811 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.54057 * 302.09489 * 14 13 2 33 33 H 1.08999 * 109.53332 * 62.33949 * 14 13 2 34 34 H 1.09000 * 110.12603 * 33.46769 * 17 15 14 35 35 H 1.09006 * 110.12457 * 155.14058 * 17 15 14 36 36 H 1.09009 * 110.12231 * 119.16231 * 18 17 15 37 37 H 1.08998 * 110.12935 * 240.77159 * 18 17 15 38 38 H 1.08996 * 109.53881 * 297.66114 * 21 13 2 39 39 H 1.09004 * 109.53445 * 57.83128 * 21 13 2 40 40 H 1.09003 * 111.10189 * 312.45965 * 22 15 14 41 41 H 0.96702 * 117.00241 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5944 0.0278 -2.4788 6 1 1.0848 0.9748 -2.3791 7 6 1.8373 -0.4959 -3.7308 8 7 2.4582 -1.6488 -3.8523 9 14 1.2843 0.4323 -5.2548 10 1 0.6143 1.6942 -4.8499 11 1 2.4654 0.7480 -6.0978 12 1 0.3343 -0.4071 -6.0281 13 7 2.0197 -0.6925 1.1993 14 6 3.4816 -0.8261 1.1699 15 6 3.9406 -1.6048 2.4162 16 1 4.9961 -1.8743 2.3796 17 6 3.0111 -2.8335 2.5563 18 6 1.7769 -2.3488 3.3390 19 6 2.0343 -0.8215 3.6470 20 1 1.5769 -0.4832 4.5767 21 6 1.5446 -0.0301 2.4204 22 6 3.5856 -0.7187 3.6412 23 6 4.1708 -1.2858 4.9089 24 8 4.8182 -2.3053 4.8719 25 8 3.9721 -0.6590 6.0790 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 3.1289 -0.7643 -1.2249 30 1 1.6367 -1.7335 -1.2746 31 1 2.6288 -2.0174 -4.7333 32 1 3.7803 -1.3666 0.2717 33 1 3.9380 0.1637 1.1697 34 1 2.7133 -3.1928 1.5712 35 1 3.5175 -3.6259 3.1077 36 1 0.8778 -2.4718 2.7351 37 1 1.6813 -2.9057 4.2710 38 1 1.9383 0.9855 2.4608 39 1 0.4550 0.0010 2.4178 40 1 3.9096 0.3107 3.4880 41 1 4.3668 -1.0610 6.8650 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708475861.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:08 Heat of formation + Delta-G solvation = -96.058142 kcal Electronic energy + Delta-G solvation = -21595.726828 eV Core-core repulsion = 18474.857755 eV Total energy + Delta-G solvation = -3120.869073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.02901 -39.25159 -36.28777 -35.65626 -32.78290 -31.13046 -30.43558 -29.34633 -27.02349 -25.22468 -23.99085 -22.89381 -21.65807 -19.81021 -19.30419 -18.72584 -18.00869 -17.07697 -16.38421 -15.86335 -15.28426 -14.72238 -14.48584 -14.04401 -13.78576 -13.56889 -13.13895 -13.02869 -12.50245 -12.38624 -12.01099 -11.66350 -11.56833 -11.32575 -11.18282 -11.00193 -10.92038 -10.83451 -10.67635 -10.58243 -10.46218 -10.28065 -10.04323 -9.94421 -9.77937 -9.19161 -9.04370 -8.33421 -7.64750 -5.99991 -4.01388 2.17672 2.99843 3.30487 3.38504 3.41588 4.29376 4.44027 4.47554 4.64552 4.83303 5.22967 5.34282 5.36339 5.37443 5.48609 5.57030 5.65822 5.69501 5.86780 5.92294 5.98209 6.03449 6.14369 6.21532 6.23961 6.31968 6.34620 6.41382 6.50027 6.55303 6.71795 6.75580 6.93827 7.12771 7.54806 7.63725 7.82168 7.85679 7.87153 8.07735 8.43943 9.05100 9.61923 11.11303 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.038107 B = 0.004529 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.602341 B = 6180.756123 C = 6452.517770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.088 3.912 3 H 0.025 0.975 4 C 0.030 3.970 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.533 5.533 14 C 0.060 3.940 15 C -0.073 4.073 16 H 0.092 0.908 17 C -0.104 4.104 18 C -0.102 4.102 19 C -0.083 4.083 20 H 0.093 0.907 21 C 0.059 3.941 22 C -0.091 4.091 23 C 0.490 3.510 24 O -0.512 6.512 25 O -0.520 6.520 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.015 0.985 30 H 0.029 0.971 31 H 0.259 0.741 32 H 0.097 0.903 33 H 0.027 0.973 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.027 0.973 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 1.785 17.354 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.019 4.019 3 H 0.043 0.957 4 C -0.007 4.007 5 C -0.555 4.555 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.259 5.259 14 C -0.068 4.068 15 C -0.092 4.092 16 H 0.111 0.889 17 C -0.141 4.141 18 C -0.140 4.140 19 C -0.102 4.102 20 H 0.112 0.888 21 C -0.069 4.069 22 C -0.110 4.110 23 C 0.332 3.668 24 O -0.399 6.399 25 O -0.331 6.331 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.045 0.955 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.125 0.875 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 0.382 1.096 16.834 16.874 hybrid contribution 0.438 1.108 -0.343 1.240 sum 0.820 2.204 16.491 16.658 Atomic orbital electron populations 1.21753 0.95299 1.01599 1.00006 1.21799 0.95021 0.95064 0.90008 0.95743 1.19213 0.95926 0.96371 0.89210 1.21221 1.37473 1.05902 0.90900 0.92696 1.24974 0.95325 0.94949 0.99003 1.69976 1.41793 1.18135 1.23309 0.86593 0.78392 0.79972 0.83377 1.19811 1.21119 1.21040 1.61664 1.09874 1.52558 1.01761 1.22358 0.88110 0.98306 0.98014 1.22445 0.99991 0.95019 0.91712 0.88936 1.22050 0.94558 0.96256 1.01250 1.22649 0.99832 0.92828 0.98699 1.23123 0.91058 0.97627 0.98364 0.88847 1.22277 1.00672 0.94353 0.89570 1.22460 0.97930 1.01246 0.89350 1.23489 0.76673 0.81731 0.84907 1.90692 1.38000 1.24297 1.86940 1.84565 1.73296 1.56771 1.18496 0.95047 0.91564 0.92656 0.96717 0.95230 0.93095 0.88458 0.95465 0.90142 0.92530 0.90232 0.93549 0.95479 0.90007 0.87532 0.73719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.74 37.16 0.32 -2.05 16 2 C 0.09 1.75 2.15 -67.71 -0.15 1.60 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 4 C 0.03 0.74 4.16 -27.88 -0.12 0.63 16 5 C -0.52 -14.04 8.28 -34.44 -0.29 -14.32 16 6 H 0.05 1.46 7.12 -52.49 -0.37 1.09 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.53 -8.95 3.32 -225.54 -0.75 -9.70 16 14 C 0.06 0.98 4.41 -3.37 -0.01 0.97 16 15 C -0.07 -1.04 3.23 -88.00 -0.28 -1.32 16 16 H 0.09 1.32 7.94 -51.93 -0.41 0.90 16 17 C -0.10 -1.51 5.39 -25.33 -0.14 -1.64 16 18 C -0.10 -1.35 5.74 -23.53 -0.14 -1.48 16 19 C -0.08 -1.01 3.85 -86.11 -0.33 -1.34 16 20 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 21 C 0.06 0.82 4.59 -3.37 -0.02 0.81 16 22 C -0.09 -1.13 2.73 -89.24 -0.24 -1.37 16 23 C 0.49 6.03 7.26 36.01 0.26 6.29 16 24 O -0.51 -7.66 16.02 -18.75 -0.30 -7.96 16 25 O -0.52 -4.91 13.42 -39.24 -0.53 -5.43 16 26 H 0.03 0.48 6.35 -51.93 -0.33 0.15 16 27 H 0.07 1.30 6.92 -51.93 -0.36 0.94 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.01 0.38 6.12 -51.93 -0.32 0.06 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 32 H 0.10 1.83 6.04 -51.93 -0.31 1.52 16 33 H 0.03 0.44 8.03 -51.93 -0.42 0.02 16 34 H 0.08 1.30 7.80 -51.93 -0.41 0.90 16 35 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 36 H 0.08 1.11 7.84 -51.92 -0.41 0.70 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.03 0.37 8.03 -51.93 -0.42 -0.04 16 39 H 0.08 1.10 6.19 -51.93 -0.32 0.78 16 40 H 0.11 1.25 7.87 -51.93 -0.41 0.84 16 41 H 0.40 2.08 9.10 45.56 0.41 2.49 16 LS Contribution 314.95 15.07 4.75 4.75 Total: -1.00 -30.59 314.95 -8.05 -38.63 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.72 Total: 0.69 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.22 Total: -11.69 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.01 Total: -35.27 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.83 Total: -13.39 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.59 -8.05 -38.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708475861.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.424 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds