Wall clock time and date at job start Mon Mar 30 2020 05:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47108 * 2 1 4 4 C 1.53004 * 109.46914 * 240.00302 * 2 1 3 5 5 C 1.50705 * 109.46992 * 62.76853 * 4 2 1 6 6 H 1.08000 * 120.00091 * 5.59326 * 5 4 2 7 7 C 1.37872 * 119.99924 * 185.59629 * 5 4 2 8 8 N 1.31515 * 120.00243 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99919 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46987 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46986 * 119.99836 * 9 7 5 12 12 H 1.48492 * 109.47437 * 240.00069 * 9 7 5 13 13 N 1.46895 * 109.47289 * 120.00418 * 2 1 3 14 14 C 1.46824 * 111.00186 * 174.54232 * 13 2 1 15 15 C 1.53959 * 109.06070 * 182.21684 * 14 13 2 16 16 H 1.09001 * 112.74192 * 171.05011 * 15 14 13 17 17 C 1.54705 * 107.21341 * 46.24322 * 15 14 13 18 18 C 1.53975 * 106.11324 * 274.30142 * 17 15 14 19 19 C 1.57917 * 105.84287 * 359.60712 * 18 17 15 20 20 H 1.09000 * 113.46261 * 210.67773 * 19 18 17 21 21 C 1.46816 * 111.00314 * 300.22581 * 13 2 1 22 22 C 1.55301 * 106.36897 * 295.28449 * 15 14 13 23 23 C 1.50703 * 111.10192 * 188.37276 * 22 15 14 24 24 O 1.20826 * 119.99334 * 359.97438 * 23 22 15 25 25 O 1.34223 * 120.00486 * 180.02562 * 23 22 15 26 26 H 1.09004 * 109.46914 * 299.99398 * 1 2 3 27 27 H 1.08993 * 109.47616 * 59.99429 * 1 2 3 28 28 H 1.09003 * 109.47120 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47107 * 182.76218 * 4 2 1 30 30 H 1.08996 * 109.47333 * 302.76959 * 4 2 1 31 31 H 0.97005 * 119.99811 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.54057 * 302.09489 * 14 13 2 33 33 H 1.08999 * 109.53332 * 62.33949 * 14 13 2 34 34 H 1.09000 * 110.12603 * 33.46769 * 17 15 14 35 35 H 1.09006 * 110.12457 * 155.14058 * 17 15 14 36 36 H 1.09009 * 110.12231 * 119.16231 * 18 17 15 37 37 H 1.08998 * 110.12935 * 240.77159 * 18 17 15 38 38 H 1.08996 * 109.53881 * 297.66114 * 21 13 2 39 39 H 1.09004 * 109.53445 * 57.83128 * 21 13 2 40 40 H 1.09003 * 111.10189 * 312.45965 * 22 15 14 41 41 H 0.96702 * 117.00241 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5944 0.0278 -2.4788 6 1 1.0848 0.9748 -2.3791 7 6 1.8373 -0.4959 -3.7308 8 7 2.4582 -1.6488 -3.8523 9 14 1.2843 0.4323 -5.2548 10 1 0.6143 1.6942 -4.8499 11 1 2.4654 0.7480 -6.0978 12 1 0.3343 -0.4071 -6.0281 13 7 2.0197 -0.6925 1.1993 14 6 3.4816 -0.8261 1.1699 15 6 3.9406 -1.6048 2.4162 16 1 4.9961 -1.8743 2.3796 17 6 3.0111 -2.8335 2.5563 18 6 1.7769 -2.3488 3.3390 19 6 2.0343 -0.8215 3.6470 20 1 1.5769 -0.4832 4.5767 21 6 1.5446 -0.0301 2.4204 22 6 3.5856 -0.7187 3.6412 23 6 4.1708 -1.2858 4.9089 24 8 4.8182 -2.3053 4.8719 25 8 3.9721 -0.6590 6.0790 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 3.1289 -0.7643 -1.2249 30 1 1.6367 -1.7335 -1.2746 31 1 2.6288 -2.0174 -4.7333 32 1 3.7803 -1.3666 0.2717 33 1 3.9380 0.1637 1.1697 34 1 2.7133 -3.1928 1.5712 35 1 3.5175 -3.6259 3.1077 36 1 0.8778 -2.4718 2.7351 37 1 1.6813 -2.9057 4.2710 38 1 1.9383 0.9855 2.4608 39 1 0.4550 0.0010 2.4178 40 1 3.9096 0.3107 3.4880 41 1 4.3668 -1.0610 6.8650 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708475861.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:08 Heat of formation + Delta-G solvation = -115.411046 kcal Electronic energy + Delta-G solvation = -21596.566033 eV Core-core repulsion = 18474.857755 eV Total energy + Delta-G solvation = -3121.708278 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.09789 -40.33839 -37.43926 -36.88783 -34.76266 -32.31663 -32.04585 -30.44084 -28.82679 -26.57020 -25.41567 -24.49169 -22.75992 -20.94244 -20.83098 -19.89937 -18.94694 -18.68426 -17.83007 -16.96579 -16.61641 -16.35831 -15.88739 -15.31633 -15.17218 -14.99859 -14.35698 -14.27079 -14.02455 -13.65301 -13.57924 -13.25864 -12.98707 -12.69216 -12.58290 -12.53369 -12.35159 -12.20280 -12.06198 -11.89014 -11.82752 -11.62588 -11.50907 -11.23085 -11.12308 -11.01444 -10.86772 -10.48021 -9.02022 -8.15721 -6.24573 1.23791 1.40761 1.41671 1.53865 2.14612 2.42405 3.03437 3.18393 3.36429 3.52094 3.78023 4.07576 4.25428 4.31231 4.36566 4.39746 4.49018 4.51996 4.60329 4.64010 4.74317 4.82050 4.86158 4.93888 4.98410 5.05139 5.13635 5.21622 5.22639 5.31190 5.36506 5.49014 5.55001 5.60133 5.65470 5.78018 5.83800 6.17458 6.44339 6.46784 6.92469 7.06098 7.43545 8.96426 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.038107 B = 0.004529 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.602341 B = 6180.756123 C = 6452.517770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.098 3.902 3 H 0.021 0.979 4 C 0.040 3.960 5 C -0.528 4.528 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.959 3.041 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.539 5.539 14 C 0.065 3.935 15 C -0.070 4.070 16 H 0.088 0.912 17 C -0.102 4.102 18 C -0.101 4.101 19 C -0.069 4.069 20 H 0.125 0.875 21 C 0.057 3.943 22 C -0.088 4.088 23 C 0.499 3.501 24 O -0.544 6.544 25 O -0.509 6.509 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.045 0.955 29 H -0.009 1.009 30 H -0.007 1.007 31 H 0.261 0.739 32 H 0.059 0.941 33 H 0.030 0.970 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.038 0.962 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.515 3.639 19.345 19.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.009 4.009 3 H 0.039 0.961 4 C 0.002 3.998 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.784 3.216 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.264 5.264 14 C -0.063 4.063 15 C -0.089 4.089 16 H 0.107 0.893 17 C -0.140 4.140 18 C -0.138 4.138 19 C -0.087 4.087 20 H 0.143 0.857 21 C -0.070 4.070 22 C -0.107 4.107 23 C 0.343 3.657 24 O -0.434 6.434 25 O -0.322 6.322 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.009 0.991 30 H 0.012 0.988 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.111 0.889 40 H 0.139 0.861 41 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -0.663 2.970 18.869 19.113 hybrid contribution 0.806 0.502 -0.901 1.309 sum 0.143 3.471 17.968 18.301 Atomic orbital electron populations 1.21653 0.93816 1.01305 1.01064 1.21491 0.96074 0.94033 0.89314 0.96141 1.19025 0.94312 0.94851 0.91592 1.21628 1.36986 1.06155 0.91927 0.92098 1.25882 0.95414 0.95792 1.02499 1.70120 1.43235 1.19913 1.24107 0.85493 0.77975 0.78979 0.79167 1.18439 1.20793 1.20648 1.61568 1.09934 1.52835 1.02064 1.22209 0.88184 0.98210 0.97715 1.22320 0.99627 0.95029 0.91878 0.89347 1.21982 0.95599 0.96432 0.99985 1.22616 0.98311 0.94079 0.98812 1.23130 0.90699 0.96186 0.98710 0.85702 1.22405 1.01332 0.94861 0.88417 1.22372 0.98260 1.01322 0.88701 1.23235 0.75915 0.81034 0.85513 1.90700 1.39492 1.25724 1.87476 1.84496 1.72968 1.56243 1.18499 0.91314 0.93098 0.93601 0.99077 0.98823 0.93041 0.92234 0.95145 0.92938 0.92814 0.91148 0.92134 0.94369 0.88911 0.86079 0.71226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 8.74 71.98 0.63 -3.70 16 2 C 0.10 3.93 2.15 44.92 0.10 4.03 16 3 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 4 C 0.04 2.05 4.16 29.85 0.12 2.17 16 5 C -0.53 -29.36 8.28 25.60 0.21 -29.15 16 6 H 0.06 3.24 7.12 -2.91 -0.02 3.22 16 7 C 0.00 0.09 5.46 84.65 0.46 0.56 16 8 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 9 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 10 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 N -0.54 -17.98 3.32 -867.49 -2.88 -20.85 16 14 C 0.06 2.19 4.41 86.64 0.38 2.57 16 15 C -0.07 -1.98 3.23 -9.10 -0.03 -2.01 16 16 H 0.09 2.57 7.94 -2.39 -0.02 2.55 16 17 C -0.10 -3.01 5.39 31.50 0.17 -2.84 16 18 C -0.10 -2.47 5.74 32.67 0.19 -2.28 16 19 C -0.07 -1.44 3.85 -7.87 -0.03 -1.47 16 20 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 21 C 0.06 1.42 4.59 86.65 0.40 1.82 16 22 C -0.09 -1.96 2.73 -9.90 -0.03 -1.99 16 23 C 0.50 10.90 7.26 71.24 0.52 11.41 16 24 O -0.54 -15.36 16.02 21.96 0.35 -15.01 16 25 O -0.51 -7.57 13.42 -51.35 -0.69 -8.26 16 26 H 0.07 1.94 6.35 -2.39 -0.02 1.92 16 27 H 0.05 1.96 6.92 -2.39 -0.02 1.94 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H -0.01 -0.50 6.12 -2.39 -0.01 -0.52 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 32 H 0.06 2.44 6.04 -2.39 -0.01 2.42 16 33 H 0.03 0.99 8.03 -2.39 -0.02 0.97 16 34 H 0.05 1.81 7.80 -2.39 -0.02 1.79 16 35 H 0.05 1.60 7.68 -2.38 -0.02 1.58 16 36 H 0.07 1.88 7.84 -2.38 -0.02 1.86 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.04 0.90 8.03 -2.39 -0.02 0.88 16 39 H 0.09 2.14 6.19 -2.39 -0.01 2.12 16 40 H 0.12 2.43 7.87 -2.39 -0.02 2.41 16 41 H 0.43 2.72 9.10 -74.06 -0.67 2.04 16 Total: -1.00 -67.88 314.95 2.54 -65.34 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.35 Total: 10.14 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 3.09 Total: -20.88 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -2.59 Total: -77.45 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.34 Total: -23.27 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.88 2.54 -65.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708475861.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.070 kcal (2) G-P(sol) polarization free energy of solvation -67.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds