Wall clock time and date at job start Mon Mar 30 2020 05:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.28644 * 2 1 4 4 C 1.54376 * 110.32755 * 122.23732 * 2 1 3 5 5 N 1.48552 * 104.59636 * 142.75361 * 4 2 1 6 6 C 1.46897 * 111.00237 * 200.96006 * 5 4 2 7 7 C 1.52999 * 109.47482 * 267.45215 * 6 5 4 8 8 C 1.50696 * 115.55523 * 177.80995 * 7 6 5 9 9 H 1.08004 * 120.00274 * 216.66855 * 8 7 6 10 10 C 1.37881 * 119.99841 * 36.66397 * 8 7 6 11 11 N 1.31521 * 119.99831 * 196.34778 * 10 8 7 12 12 Si 1.86803 * 120.00076 * 16.34362 * 10 8 7 13 13 H 1.48494 * 109.46900 * 264.37810 * 12 10 8 14 14 H 1.48497 * 109.46700 * 24.38046 * 12 10 8 15 15 H 1.48494 * 109.46648 * 144.37848 * 12 10 8 16 16 C 1.53004 * 117.51196 * 323.50749 * 7 6 5 17 17 C 1.53004 * 60.00015 * 107.48181 * 16 7 6 18 18 C 1.48562 * 104.22060 * 320.51587 * 5 4 2 19 19 C 1.54260 * 110.32680 * 237.88023 * 2 1 3 20 20 C 1.52996 * 110.32592 * 122.20292 * 19 2 1 21 21 C 1.50701 * 110.32396 * 359.97438 * 19 2 1 22 22 O 1.20822 * 120.00117 * 250.77678 * 21 19 2 23 23 O 1.34235 * 119.99559 * 70.77283 * 21 19 2 24 24 H 1.08998 * 109.46393 * 181.38361 * 1 2 3 25 25 H 1.08996 * 109.47088 * 301.38067 * 1 2 3 26 26 H 1.08995 * 109.46942 * 61.38683 * 1 2 3 27 27 H 1.09001 * 110.40992 * 23.96856 * 4 2 1 28 28 H 1.09004 * 110.40864 * 261.53379 * 4 2 1 29 29 H 1.09004 * 109.47679 * 147.44469 * 6 5 4 30 30 H 1.09005 * 109.47005 * 27.45077 * 6 5 4 31 31 H 0.96997 * 119.99510 * 179.97438 * 11 10 8 32 32 H 1.09004 * 117.49395 * 214.96598 * 16 7 6 33 33 H 1.08998 * 117.50475 * 359.97438 * 16 7 6 34 34 H 1.09001 * 117.49594 * 252.51288 * 17 16 7 35 35 H 1.09006 * 117.50072 * 107.48495 * 17 16 7 36 36 H 1.08998 * 110.41109 * 158.26606 * 18 5 4 37 37 H 1.08995 * 110.41120 * 280.58435 * 18 5 4 38 38 H 1.09008 * 109.46649 * 180.70350 * 20 19 2 39 39 H 1.08995 * 109.47167 * 300.69872 * 20 19 2 40 40 H 1.08993 * 109.47275 * 60.70483 * 20 19 2 41 41 H 0.96698 * 116.99940 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0663 -0.7722 1.2245 5 7 3.2695 -1.4834 0.7210 6 6 3.6071 -2.6230 1.5842 7 6 4.6143 -2.1777 2.6462 8 6 5.0181 -3.2338 3.6426 9 1 5.1938 -2.9645 4.6736 10 6 5.1631 -4.5439 3.2379 11 7 5.1953 -5.5084 4.1314 12 14 5.3136 -4.9488 1.4205 13 1 3.9789 -5.3160 0.8831 14 1 5.8324 -3.7641 0.6908 15 1 6.2492 -6.0883 1.2432 16 6 5.6751 -1.1566 2.2302 17 6 4.5235 -0.7340 3.1448 18 6 2.8808 -1.9414 -0.6377 19 6 2.0659 -0.7691 -1.2251 20 6 2.9675 0.1353 -2.0677 21 6 0.9225 -1.2916 -2.0563 22 8 0.6890 -2.4767 -2.0854 23 8 0.1635 -0.4403 -2.7641 24 1 -0.3632 -1.0274 0.0248 25 1 -0.3633 0.5351 0.8773 26 1 -0.3633 0.4921 -0.9021 27 1 1.3230 -1.4863 1.5789 28 1 2.3394 -0.0797 2.0208 29 1 4.0432 -3.4192 0.9808 30 1 2.7036 -2.9899 2.0714 31 1 5.2969 -6.4300 3.8467 32 1 6.6649 -1.2486 2.6774 33 1 5.6558 -0.8021 1.1997 34 1 3.7463 -0.1015 2.7158 35 1 4.7557 -0.5482 4.1934 36 1 3.7672 -2.1294 -1.2436 37 1 2.2668 -2.8398 -0.5749 38 1 3.3279 -0.4177 -2.9352 39 1 2.4006 1.0046 -2.4009 40 1 3.8161 0.4631 -1.4675 41 1 -0.5585 -0.8222 -3.2817 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710179228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:01 Heat of formation + Delta-G solvation = -47.085059 kcal Electronic energy + Delta-G solvation = -21927.229568 eV Core-core repulsion = 18808.484127 eV Total energy + Delta-G solvation = -3118.745441 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.13724 -38.86931 -36.60572 -36.24704 -33.08870 -32.12955 -31.59958 -27.57521 -26.60366 -25.55472 -24.47071 -22.71348 -21.44492 -20.75578 -19.56936 -18.88939 -17.93562 -16.68472 -16.47969 -15.94603 -15.47972 -15.04851 -14.43719 -14.28098 -13.69708 -13.43783 -13.22551 -12.96957 -12.80191 -12.62220 -12.40566 -12.16546 -11.93539 -11.72871 -11.64675 -11.46883 -11.24353 -10.90494 -10.77421 -10.67173 -10.42395 -10.32781 -9.96799 -9.74503 -9.36156 -9.13540 -8.59526 -8.21868 -8.01441 -6.15707 -4.05041 2.09262 2.84463 3.23855 3.38840 3.44604 4.27198 4.36013 4.42113 4.43290 4.71227 4.90794 5.02631 5.21142 5.25014 5.30487 5.44444 5.57084 5.63222 5.67636 5.77671 5.79219 5.87962 5.95289 5.98354 6.00034 6.08782 6.15629 6.20678 6.26283 6.34951 6.51870 6.72657 6.80211 6.99107 7.09382 7.28196 7.37194 7.44736 7.76066 7.84182 8.55143 8.92326 9.51181 10.96931 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025068 B = 0.006439 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.681529 B = 4347.374434 C = 4785.805191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.079 4.079 3 H 0.095 0.905 4 C 0.030 3.970 5 N -0.499 5.499 6 C 0.070 3.930 7 C 0.014 3.986 8 C -0.484 4.484 9 H 0.077 0.923 10 C 0.077 3.923 11 N -0.889 5.889 12 Si 0.878 3.122 13 H -0.284 1.284 14 H -0.256 1.256 15 H -0.296 1.296 16 C -0.191 4.191 17 C -0.190 4.190 18 C 0.039 3.961 19 C -0.055 4.055 20 C -0.131 4.131 21 C 0.496 3.504 22 O -0.514 6.514 23 O -0.513 6.513 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.265 0.735 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 12.424 -13.260 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.098 4.098 3 H 0.113 0.887 4 C -0.098 4.098 5 N -0.222 5.222 6 C -0.056 4.056 7 C 0.012 3.988 8 C -0.522 4.522 9 H 0.095 0.905 10 C -0.126 4.126 11 N -0.525 5.525 12 Si 0.708 3.292 13 H -0.211 1.211 14 H -0.180 1.180 15 H -0.224 1.224 16 C -0.229 4.229 17 C -0.227 4.227 18 C -0.089 4.089 19 C -0.056 4.056 20 C -0.188 4.188 21 C 0.338 3.662 22 O -0.401 6.401 23 O -0.325 6.325 24 H 0.071 0.929 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -8.510 12.375 -12.984 19.853 hybrid contribution -1.095 -1.322 -1.233 2.113 sum -9.605 11.052 -14.217 20.409 Atomic orbital electron populations 1.22162 0.94599 1.02063 1.03185 1.22006 0.95543 1.00017 0.92259 0.88681 1.23533 0.91618 0.97956 0.96679 1.65435 1.31450 1.24301 1.01047 1.22260 0.98831 0.90769 0.93768 1.19231 0.95148 0.89187 0.95206 1.20400 1.46234 0.90282 0.95240 0.90512 1.24969 0.94322 0.96075 0.97282 1.69966 1.48548 0.99965 1.34035 0.87016 0.77580 0.77831 0.86771 1.21101 1.18049 1.22410 1.22937 0.93808 1.08131 0.98039 1.22894 1.01798 1.00165 0.97878 1.23224 0.98528 0.95011 0.92132 1.21361 0.91636 0.98036 0.94605 1.21814 0.99441 0.98509 0.99071 1.23293 0.82097 0.84207 0.76618 1.90724 1.69505 1.18011 1.61853 1.84589 1.44761 1.44028 1.59093 0.92948 0.91517 0.90851 0.93450 0.88602 0.92086 0.93314 0.92521 0.90902 0.90406 0.90065 0.91019 0.89531 0.91930 0.92401 0.91452 0.89963 0.73722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 7.92 37.16 0.29 -1.42 16 2 C -0.08 -0.95 3.30 -89.24 -0.29 -1.24 16 3 H 0.09 1.00 7.71 -51.93 -0.40 0.60 16 4 C 0.03 0.45 5.41 -2.19 -0.01 0.44 16 5 N -0.50 -8.86 3.91 -229.98 -0.90 -9.76 16 6 C 0.07 1.55 4.15 -3.83 -0.02 1.53 16 7 C 0.01 0.33 1.78 -155.66 -0.28 0.05 16 8 C -0.48 -13.71 9.53 -34.44 -0.33 -14.03 16 9 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 10 C 0.08 2.21 5.39 -17.82 -0.10 2.11 16 11 N -0.89 -27.06 13.96 55.43 0.77 -26.28 16 12 Si 0.88 22.12 24.20 -169.99 -4.11 18.00 16 13 H -0.28 -7.03 7.00 56.52 0.40 -6.63 16 14 H -0.26 -6.23 6.85 56.52 0.39 -5.85 16 15 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 16 C -0.19 -4.15 9.63 -26.73 -0.26 -4.41 16 17 C -0.19 -3.94 9.51 -26.73 -0.25 -4.20 16 18 C 0.04 0.64 5.24 -2.18 -0.01 0.63 16 19 C -0.05 -0.70 0.97 -154.28 -0.15 -0.85 16 20 C -0.13 -1.38 8.07 37.16 0.30 -1.08 16 21 C 0.50 6.29 5.16 36.01 0.19 6.47 16 22 O -0.51 -8.30 16.17 -18.75 -0.30 -8.60 16 23 O -0.51 -4.61 11.34 -39.27 -0.45 -5.05 16 24 H 0.05 0.63 7.47 -51.93 -0.39 0.24 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.69 6.23 -51.93 -0.32 0.37 16 27 H 0.05 0.75 7.28 -51.93 -0.38 0.37 16 28 H 0.10 1.40 5.61 -51.93 -0.29 1.11 16 29 H 0.06 1.43 2.48 -51.93 -0.13 1.30 16 30 H 0.05 1.10 7.42 -51.93 -0.39 0.72 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 33 H 0.08 1.59 7.66 -51.93 -0.40 1.19 16 34 H 0.08 1.48 4.65 -51.93 -0.24 1.24 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 36 H 0.09 1.39 7.86 -51.93 -0.41 0.98 16 37 H 0.06 1.15 6.68 -51.93 -0.35 0.80 16 38 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.40 2.00 9.10 45.56 0.41 2.42 16 LS Contribution 311.94 15.07 4.70 4.70 Total: -1.00 -32.14 311.94 -6.59 -38.74 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.39 Total: 4.25 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -0.92 Total: -16.00 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: -0.13 Total: -36.04 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.75 Total: -13.65 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.11 Total: 18.00 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.14 -6.59 -38.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710179228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.350 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds