Wall clock time and date at job start Mon Mar 30 2020 05:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.28644 * 2 1 4 4 C 1.54376 * 110.32755 * 122.23732 * 2 1 3 5 5 N 1.48552 * 104.59636 * 142.75361 * 4 2 1 6 6 C 1.46897 * 111.00237 * 200.96006 * 5 4 2 7 7 C 1.52999 * 109.47482 * 267.45215 * 6 5 4 8 8 C 1.50696 * 115.55523 * 177.80995 * 7 6 5 9 9 H 1.08004 * 120.00274 * 216.66855 * 8 7 6 10 10 C 1.37881 * 119.99841 * 36.66397 * 8 7 6 11 11 N 1.31521 * 119.99831 * 196.34778 * 10 8 7 12 12 Si 1.86803 * 120.00076 * 16.34362 * 10 8 7 13 13 H 1.48494 * 109.46900 * 264.37810 * 12 10 8 14 14 H 1.48497 * 109.46700 * 24.38046 * 12 10 8 15 15 H 1.48494 * 109.46648 * 144.37848 * 12 10 8 16 16 C 1.53004 * 117.51196 * 323.50749 * 7 6 5 17 17 C 1.53004 * 60.00015 * 107.48181 * 16 7 6 18 18 C 1.48562 * 104.22060 * 320.51587 * 5 4 2 19 19 C 1.54260 * 110.32680 * 237.88023 * 2 1 3 20 20 C 1.52996 * 110.32592 * 122.20292 * 19 2 1 21 21 C 1.50701 * 110.32396 * 359.97438 * 19 2 1 22 22 O 1.20822 * 120.00117 * 250.77678 * 21 19 2 23 23 O 1.34235 * 119.99559 * 70.77283 * 21 19 2 24 24 H 1.08998 * 109.46393 * 181.38361 * 1 2 3 25 25 H 1.08996 * 109.47088 * 301.38067 * 1 2 3 26 26 H 1.08995 * 109.46942 * 61.38683 * 1 2 3 27 27 H 1.09001 * 110.40992 * 23.96856 * 4 2 1 28 28 H 1.09004 * 110.40864 * 261.53379 * 4 2 1 29 29 H 1.09004 * 109.47679 * 147.44469 * 6 5 4 30 30 H 1.09005 * 109.47005 * 27.45077 * 6 5 4 31 31 H 0.96997 * 119.99510 * 179.97438 * 11 10 8 32 32 H 1.09004 * 117.49395 * 214.96598 * 16 7 6 33 33 H 1.08998 * 117.50475 * 359.97438 * 16 7 6 34 34 H 1.09001 * 117.49594 * 252.51288 * 17 16 7 35 35 H 1.09006 * 117.50072 * 107.48495 * 17 16 7 36 36 H 1.08998 * 110.41109 * 158.26606 * 18 5 4 37 37 H 1.08995 * 110.41120 * 280.58435 * 18 5 4 38 38 H 1.09008 * 109.46649 * 180.70350 * 20 19 2 39 39 H 1.08995 * 109.47167 * 300.69872 * 20 19 2 40 40 H 1.08993 * 109.47275 * 60.70483 * 20 19 2 41 41 H 0.96698 * 116.99940 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0663 -0.7722 1.2245 5 7 3.2695 -1.4834 0.7210 6 6 3.6071 -2.6230 1.5842 7 6 4.6143 -2.1777 2.6462 8 6 5.0181 -3.2338 3.6426 9 1 5.1938 -2.9645 4.6736 10 6 5.1631 -4.5439 3.2379 11 7 5.1953 -5.5084 4.1314 12 14 5.3136 -4.9488 1.4205 13 1 3.9789 -5.3160 0.8831 14 1 5.8324 -3.7641 0.6908 15 1 6.2492 -6.0883 1.2432 16 6 5.6751 -1.1566 2.2302 17 6 4.5235 -0.7340 3.1448 18 6 2.8808 -1.9414 -0.6377 19 6 2.0659 -0.7691 -1.2251 20 6 2.9675 0.1353 -2.0677 21 6 0.9225 -1.2916 -2.0563 22 8 0.6890 -2.4767 -2.0854 23 8 0.1635 -0.4403 -2.7641 24 1 -0.3632 -1.0274 0.0248 25 1 -0.3633 0.5351 0.8773 26 1 -0.3633 0.4921 -0.9021 27 1 1.3230 -1.4863 1.5789 28 1 2.3394 -0.0797 2.0208 29 1 4.0432 -3.4192 0.9808 30 1 2.7036 -2.9899 2.0714 31 1 5.2969 -6.4300 3.8467 32 1 6.6649 -1.2486 2.6774 33 1 5.6558 -0.8021 1.1997 34 1 3.7463 -0.1015 2.7158 35 1 4.7557 -0.5482 4.1934 36 1 3.7672 -2.1294 -1.2436 37 1 2.2668 -2.8398 -0.5749 38 1 3.3279 -0.4177 -2.9352 39 1 2.4006 1.0046 -2.4009 40 1 3.8161 0.4631 -1.4675 41 1 -0.5585 -0.8222 -3.2817 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710179228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:01 Heat of formation + Delta-G solvation = -69.763637 kcal Electronic energy + Delta-G solvation = -21928.212985 eV Core-core repulsion = 18808.484127 eV Total energy + Delta-G solvation = -3119.728858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.16228 -40.13149 -38.15099 -37.17230 -34.57830 -34.13362 -32.55776 -29.22630 -27.67057 -27.35576 -25.49957 -23.98494 -23.03205 -22.06449 -20.85099 -20.54851 -18.85610 -18.50317 -17.63691 -17.16592 -17.04023 -16.49765 -15.72369 -15.63536 -15.17915 -14.87581 -14.59652 -14.35892 -13.99354 -13.90967 -13.67920 -13.47082 -13.15640 -13.04781 -12.91773 -12.71240 -12.57307 -12.41054 -12.29545 -11.79689 -11.74198 -11.66812 -11.46229 -11.30151 -11.25252 -11.09945 -10.53906 -10.16181 -9.51467 -8.39679 -6.31509 1.13627 1.21050 1.31046 1.43140 1.96137 2.25994 2.82143 3.05616 3.22924 3.39349 3.55382 3.75319 4.06517 4.17635 4.23653 4.24945 4.36073 4.40369 4.43544 4.48382 4.59783 4.67849 4.70686 4.82110 4.89236 4.96210 4.98871 5.00015 5.13218 5.17563 5.24186 5.28839 5.35472 5.41487 5.55099 5.66939 5.70315 5.81845 5.91975 6.32960 6.69189 6.95284 7.26984 8.77174 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025068 B = 0.006439 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.681529 B = 4347.374434 C = 4785.805191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.070 4.070 3 H 0.122 0.878 4 C 0.024 3.976 5 N -0.494 5.494 6 C 0.081 3.919 7 C -0.020 4.020 8 C -0.491 4.491 9 H 0.036 0.964 10 C 0.025 3.975 11 N -0.937 5.937 12 Si 0.940 3.060 13 H -0.282 1.282 14 H -0.240 1.240 15 H -0.297 1.297 16 C -0.176 4.176 17 C -0.168 4.168 18 C 0.034 3.966 19 C -0.053 4.053 20 C -0.126 4.126 21 C 0.504 3.496 22 O -0.556 6.556 23 O -0.497 6.497 24 H 0.030 0.970 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.032 0.968 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.029 0.971 31 H 0.267 0.733 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.036 0.964 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.105 15.463 -15.935 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.089 4.089 3 H 0.141 0.859 4 C -0.103 4.103 5 N -0.217 5.217 6 C -0.046 4.046 7 C -0.021 4.021 8 C -0.528 4.528 9 H 0.054 0.946 10 C -0.174 4.174 11 N -0.576 5.576 12 Si 0.768 3.232 13 H -0.209 1.209 14 H -0.164 1.164 15 H -0.225 1.225 16 C -0.213 4.213 17 C -0.204 4.204 18 C -0.094 4.094 19 C -0.055 4.055 20 C -0.183 4.183 21 C 0.348 3.652 22 O -0.447 6.447 23 O -0.310 6.310 24 H 0.049 0.951 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.121 0.879 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -9.358 15.464 -15.682 23.930 hybrid contribution -0.900 -2.197 -0.329 2.397 sum -10.258 13.267 -16.011 23.186 Atomic orbital electron populations 1.22145 0.93490 1.01150 1.04787 1.22031 0.96388 1.00530 0.89916 0.85948 1.23639 0.90391 0.97763 0.98516 1.65360 1.33073 1.22175 1.01126 1.21917 0.97344 0.91823 0.93547 1.19153 0.97485 0.89478 0.96031 1.20635 1.45697 0.91884 0.94623 0.94618 1.25707 0.94264 0.95971 1.01443 1.70085 1.50810 1.00463 1.36217 0.86010 0.77515 0.77907 0.81732 1.20883 1.16362 1.22469 1.22891 0.93124 1.06021 0.99307 1.22958 1.01932 0.97867 0.97686 1.23245 0.98843 0.95798 0.91549 1.21332 0.91868 0.96858 0.95397 1.21821 0.99154 0.98682 0.98665 1.23198 0.82035 0.83657 0.76303 1.90727 1.70662 1.19887 1.63415 1.84514 1.44997 1.42891 1.58557 0.95079 0.90107 0.89103 0.94937 0.87851 0.93669 0.95321 0.92387 0.91813 0.88265 0.86901 0.91717 0.89368 0.94602 0.92138 0.89124 0.89962 0.71312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 7.92 71.98 0.57 -2.23 16 2 C -0.07 -1.41 3.30 -9.90 -0.03 -1.44 16 3 H 0.12 1.89 7.71 -2.39 -0.02 1.87 16 4 C 0.02 0.67 5.41 86.45 0.47 1.14 16 5 N -0.49 -16.61 3.91 -881.51 -3.45 -20.06 16 6 C 0.08 3.55 4.15 86.30 0.36 3.91 16 7 C -0.02 -0.95 1.78 -52.93 -0.09 -1.05 16 8 C -0.49 -28.71 9.53 25.60 0.24 -28.47 16 9 H 0.04 2.31 8.06 -2.91 -0.02 2.28 16 10 C 0.02 1.47 5.39 84.65 0.46 1.93 16 11 N -0.94 -59.39 13.96 21.45 0.30 -59.09 16 12 Si 0.94 46.89 24.20 68.60 1.66 48.55 16 13 H -0.28 -13.81 7.00 99.48 0.70 -13.11 16 14 H -0.24 -11.19 6.85 99.48 0.68 -10.51 16 15 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 16 C -0.18 -7.28 9.63 30.60 0.29 -6.99 16 17 C -0.17 -6.65 9.51 30.60 0.29 -6.36 16 18 C 0.03 1.05 5.24 86.45 0.45 1.51 16 19 C -0.05 -1.19 0.97 -52.03 -0.05 -1.24 16 20 C -0.13 -2.11 8.07 71.98 0.58 -1.53 16 21 C 0.50 11.48 5.16 71.24 0.37 11.85 16 22 O -0.56 -17.41 16.17 21.98 0.36 -17.05 16 23 O -0.50 -6.93 11.34 -51.46 -0.58 -7.52 16 24 H 0.03 0.69 7.47 -2.39 -0.02 0.67 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.09 1.30 6.23 -2.39 -0.01 1.29 16 27 H 0.03 1.01 7.28 -2.39 -0.02 0.99 16 28 H 0.10 2.69 5.61 -2.38 -0.01 2.67 16 29 H 0.05 2.10 2.48 -2.38 -0.01 2.10 16 30 H 0.03 1.33 7.42 -2.38 -0.02 1.31 16 31 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 32 H 0.06 2.75 8.14 -2.38 -0.02 2.73 16 33 H 0.10 3.71 7.66 -2.39 -0.02 3.69 16 34 H 0.11 3.74 4.65 -2.39 -0.01 3.73 16 35 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 36 H 0.09 2.67 7.86 -2.39 -0.02 2.65 16 37 H 0.04 1.32 6.68 -2.39 -0.02 1.30 16 38 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.09 1.13 8.10 -2.39 -0.02 1.11 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.43 2.60 9.10 -74.06 -0.67 1.92 16 Total: -1.00 -72.62 311.94 2.52 -70.09 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.33 Total: 14.04 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 3.91 Total: -28.97 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -3.15 Total: -79.15 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.23 Total: -24.57 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.66 Total: 48.55 kcal Total: -72.62 2.52 -70.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710179228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.331 kcal (2) G-P(sol) polarization free energy of solvation -72.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds