Wall clock time and date at job start Mon Mar 30 2020 05:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.29246 * 2 1 4 4 C 1.54377 * 110.32407 * 237.75801 * 2 1 3 5 5 N 1.48564 * 104.59788 * 217.25682 * 4 2 1 6 6 C 1.46893 * 111.00416 * 159.04131 * 5 4 2 7 7 C 1.53005 * 109.47236 * 60.70463 * 6 5 4 8 8 C 1.50702 * 115.54944 * 269.32565 * 7 6 5 9 9 H 1.07997 * 119.99624 * 114.40831 * 8 7 6 10 10 C 1.37880 * 119.99931 * 294.40599 * 8 7 6 11 11 N 1.31515 * 119.99971 * 352.62103 * 10 8 7 12 12 Si 1.86800 * 119.99933 * 172.62604 * 10 8 7 13 13 H 1.48500 * 109.47000 * 90.00125 * 12 10 8 14 14 H 1.48496 * 109.47072 * 209.99625 * 12 10 8 15 15 H 1.48497 * 109.46979 * 329.99628 * 12 10 8 16 16 C 1.52994 * 117.49666 * 123.61556 * 7 6 5 17 17 C 1.52998 * 117.49618 * 54.99364 * 7 6 5 18 18 C 1.48558 * 104.22052 * 39.48025 * 5 4 2 19 19 C 1.54270 * 110.32057 * 122.12292 * 2 1 3 20 20 C 1.52993 * 110.32210 * 237.78878 * 19 2 1 21 21 C 1.50700 * 110.40953 * 359.95378 * 19 2 1 22 22 O 1.20828 * 119.99465 * 108.16103 * 21 19 2 23 23 O 1.34223 * 120.00134 * 288.16464 * 21 19 2 24 24 H 1.09001 * 109.47131 * 303.22472 * 1 2 3 25 25 H 1.09010 * 109.47108 * 63.22072 * 1 2 3 26 26 H 1.08994 * 109.47694 * 183.22369 * 1 2 3 27 27 H 1.08997 * 110.41189 * 98.47920 * 4 2 1 28 28 H 1.08997 * 110.41341 * 336.02865 * 4 2 1 29 29 H 1.09000 * 109.47656 * 180.70706 * 6 5 4 30 30 H 1.09006 * 109.47069 * 300.70579 * 6 5 4 31 31 H 0.97001 * 120.00389 * 185.01300 * 11 10 8 32 32 H 1.08994 * 117.50450 * 0.02562 * 16 7 6 33 33 H 1.09006 * 117.49606 * 145.02439 * 16 7 6 34 34 H 1.09005 * 117.49778 * 214.97763 * 17 7 6 35 35 H 1.08994 * 117.50329 * 0.02562 * 17 7 6 36 36 H 1.09004 * 110.41332 * 79.30049 * 18 5 4 37 37 H 1.09004 * 110.41096 * 201.62425 * 18 5 4 38 38 H 1.08999 * 109.47682 * 302.90705 * 20 19 2 39 39 H 1.09001 * 109.47524 * 62.91162 * 20 19 2 40 40 H 1.08999 * 109.47005 * 182.91256 * 20 19 2 41 41 H 0.96693 * 117.00244 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0661 -0.7723 -1.2244 5 7 3.2692 -1.4838 -0.7209 6 6 3.6067 -2.6234 -1.5840 7 6 3.9074 -2.1212 -2.9977 8 6 2.7260 -2.0625 -3.9316 9 1 2.3738 -1.1093 -4.2973 10 6 2.0950 -3.2256 -4.3190 11 7 2.6082 -4.3919 -3.9935 12 14 0.5113 -3.1447 -5.3063 13 1 0.8322 -3.1292 -6.7562 14 1 -0.3258 -4.3316 -4.9974 15 1 -0.2313 -1.9090 -4.9504 16 6 5.2675 -2.4788 -3.6000 17 6 4.9832 -1.0442 -3.1508 18 6 2.8805 -1.9416 0.6378 19 6 2.0657 -0.7693 1.2252 20 6 2.9674 0.1351 2.0678 21 6 0.9237 -1.2912 2.0586 22 8 0.6780 -2.4741 2.0734 23 8 0.1795 -0.4419 2.7842 24 1 -0.3633 0.5631 0.8597 25 1 -0.3634 0.4631 -0.9175 26 1 -0.3634 -1.0259 0.0578 27 1 2.3394 -0.0800 -2.0207 28 1 1.3229 -1.4865 -1.5788 29 1 4.4835 -3.1339 -1.1857 30 1 2.7660 -3.3166 -1.6159 31 1 2.2055 -5.2090 -4.3268 32 1 5.9481 -3.0722 -2.9894 33 1 5.3082 -2.6718 -4.6720 34 1 4.8367 -0.2933 -3.9273 35 1 5.4771 -0.6937 -2.2445 36 1 2.2646 -2.8388 0.5750 37 1 3.7669 -2.1317 1.2431 38 1 3.7812 0.5143 1.4497 39 1 2.3845 0.9712 2.4540 40 1 3.3790 -0.4360 2.8999 41 1 -0.5418 -0.8235 3.3031 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710179232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:03 Heat of formation + Delta-G solvation = -67.801386 kcal Electronic energy + Delta-G solvation = -21927.560651 eV Core-core repulsion = 18807.916883 eV Total energy + Delta-G solvation = -3119.643768 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.86544 -38.43485 -36.35000 -36.03533 -32.85132 -31.97197 -31.29349 -26.69486 -26.30503 -25.42913 -24.23014 -22.53355 -20.94539 -20.66698 -19.27862 -18.79019 -17.71775 -16.38435 -16.09515 -15.67523 -14.97050 -14.55833 -14.24677 -13.98636 -13.64500 -13.22367 -13.02105 -12.70301 -12.58175 -12.50982 -12.09305 -11.68377 -11.63736 -11.49271 -11.27269 -10.96483 -10.82834 -10.72583 -10.65236 -10.49847 -10.44220 -10.20050 -10.10570 -10.04164 -9.28084 -8.82035 -8.45037 -8.10343 -7.58081 -6.02721 -4.06821 2.30373 3.06143 3.27050 3.35273 3.37141 4.39194 4.57914 4.74580 4.75528 4.98516 5.21928 5.30709 5.48570 5.51109 5.59271 5.63196 5.81803 5.91090 5.95888 6.08174 6.13883 6.17945 6.21123 6.28448 6.34846 6.49677 6.52564 6.60363 6.70645 6.75639 6.89304 6.92160 6.99749 7.18177 7.41589 7.54278 7.74416 7.89421 7.94755 7.97134 8.48904 8.93322 9.56209 11.05136 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.006880 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.946198 B = 4068.999476 C = 4710.470984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.084 4.084 3 H 0.089 0.911 4 C 0.055 3.945 5 N -0.501 5.501 6 C 0.092 3.908 7 C 0.053 3.947 8 C -0.491 4.491 9 H 0.058 0.942 10 C 0.070 3.930 11 N -0.877 5.877 12 Si 0.882 3.118 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.273 1.273 16 C -0.176 4.176 17 C -0.193 4.193 18 C 0.041 3.959 19 C -0.054 4.054 20 C -0.130 4.130 21 C 0.496 3.504 22 O -0.515 6.515 23 O -0.515 6.515 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.260 0.740 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 8.537 11.600 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.103 4.103 3 H 0.108 0.892 4 C -0.073 4.073 5 N -0.225 5.225 6 C -0.035 4.035 7 C 0.052 3.948 8 C -0.529 4.529 9 H 0.077 0.923 10 C -0.133 4.133 11 N -0.514 5.514 12 Si 0.710 3.290 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.197 1.197 16 C -0.215 4.215 17 C -0.230 4.230 18 C -0.087 4.087 19 C -0.056 4.056 20 C -0.187 4.187 21 C 0.338 3.662 22 O -0.402 6.402 23 O -0.326 6.326 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.740 8.485 11.406 14.322 hybrid contribution -2.026 -1.101 -0.331 2.330 sum -3.766 7.384 11.075 13.833 Atomic orbital electron populations 1.22099 0.95005 1.01841 1.02700 1.22098 0.95352 0.99886 0.92996 0.89245 1.23067 0.91802 0.97476 0.94951 1.65502 1.32121 1.24293 1.00572 1.21800 0.99397 0.90177 0.92128 1.18729 0.88354 0.96111 0.91557 1.20490 1.12094 0.92559 1.27728 0.92341 1.24970 0.97032 0.95551 0.95716 1.69976 1.40186 0.97244 1.44003 0.86740 0.84139 0.77687 0.80434 1.20669 1.21250 1.19740 1.22724 1.02471 0.96481 0.99804 1.22738 1.07437 0.91895 1.00973 1.23153 0.97881 0.94868 0.92790 1.21373 0.91525 0.98221 0.94488 1.21799 0.99317 0.98569 0.99003 1.23374 0.82147 0.84156 0.76532 1.90715 1.69052 1.18164 1.62307 1.84587 1.45347 1.44306 1.58379 0.91532 0.91560 0.93043 0.89279 0.92739 0.93531 0.93145 0.93027 0.92131 0.90636 0.91224 0.90904 0.92153 0.90244 0.90194 0.91699 0.92627 0.73948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 7.91 37.15 0.29 -1.89 16 2 C -0.08 -1.24 3.30 -89.24 -0.29 -1.53 16 3 H 0.09 1.18 7.71 -51.93 -0.40 0.78 16 4 C 0.06 1.03 4.55 -2.18 -0.01 1.02 16 5 N -0.50 -9.66 5.22 -229.97 -1.20 -10.86 16 6 C 0.09 2.11 4.80 -3.83 -0.02 2.09 16 7 C 0.05 1.28 0.90 -155.66 -0.14 1.14 16 8 C -0.49 -12.91 7.41 -34.44 -0.26 -13.16 16 9 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 10 C 0.07 1.90 5.20 -17.82 -0.09 1.81 16 11 N -0.88 -24.71 12.72 55.43 0.70 -24.01 16 12 Si 0.88 20.92 29.55 -169.99 -5.02 15.90 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 16 C -0.18 -4.14 9.88 -26.73 -0.26 -4.40 16 17 C -0.19 -4.19 9.73 -26.73 -0.26 -4.45 16 18 C 0.04 0.72 5.43 -2.18 -0.01 0.71 16 19 C -0.05 -0.78 0.97 -154.28 -0.15 -0.93 16 20 C -0.13 -1.51 8.09 37.15 0.30 -1.21 16 21 C 0.50 7.12 5.01 36.01 0.18 7.30 16 22 O -0.51 -9.14 16.17 -18.75 -0.30 -9.44 16 23 O -0.51 -5.48 11.46 -39.24 -0.45 -5.92 16 24 H 0.07 0.79 6.62 -51.93 -0.34 0.45 16 25 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 26 H 0.05 0.79 7.26 -51.93 -0.38 0.42 16 27 H 0.09 1.75 7.76 -51.93 -0.40 1.34 16 28 H 0.05 1.18 7.49 -51.93 -0.39 0.79 16 29 H 0.05 1.05 7.88 -51.93 -0.41 0.64 16 30 H 0.05 1.31 7.19 -51.93 -0.37 0.94 16 31 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 32 H 0.06 1.35 8.03 -51.93 -0.42 0.94 16 33 H 0.08 1.86 8.14 -51.93 -0.42 1.43 16 34 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.06 1.20 6.59 -51.93 -0.34 0.85 16 37 H 0.08 1.26 7.86 -51.93 -0.41 0.86 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.67 7.99 -51.93 -0.41 0.25 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.40 2.62 9.10 45.56 0.41 3.04 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -29.69 326.11 -8.03 -37.72 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.95 Total: 5.22 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.72 Total: -13.51 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: -0.50 Total: -34.87 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.75 Total: -15.37 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.69 -8.03 -37.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710179232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.085 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds