Wall clock time and date at job start Mon Mar 30 2020 05:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.29246 * 2 1 4 4 C 1.54377 * 110.32407 * 237.75801 * 2 1 3 5 5 N 1.48564 * 104.59788 * 217.25682 * 4 2 1 6 6 C 1.46893 * 111.00416 * 159.04131 * 5 4 2 7 7 C 1.53005 * 109.47236 * 60.70463 * 6 5 4 8 8 C 1.50702 * 115.54944 * 269.32565 * 7 6 5 9 9 H 1.07997 * 119.99624 * 114.40831 * 8 7 6 10 10 C 1.37880 * 119.99931 * 294.40599 * 8 7 6 11 11 N 1.31515 * 119.99971 * 352.62103 * 10 8 7 12 12 Si 1.86800 * 119.99933 * 172.62604 * 10 8 7 13 13 H 1.48500 * 109.47000 * 90.00125 * 12 10 8 14 14 H 1.48496 * 109.47072 * 209.99625 * 12 10 8 15 15 H 1.48497 * 109.46979 * 329.99628 * 12 10 8 16 16 C 1.52994 * 117.49666 * 123.61556 * 7 6 5 17 17 C 1.52998 * 117.49618 * 54.99364 * 7 6 5 18 18 C 1.48558 * 104.22052 * 39.48025 * 5 4 2 19 19 C 1.54270 * 110.32057 * 122.12292 * 2 1 3 20 20 C 1.52993 * 110.32210 * 237.78878 * 19 2 1 21 21 C 1.50700 * 110.40953 * 359.95378 * 19 2 1 22 22 O 1.20828 * 119.99465 * 108.16103 * 21 19 2 23 23 O 1.34223 * 120.00134 * 288.16464 * 21 19 2 24 24 H 1.09001 * 109.47131 * 303.22472 * 1 2 3 25 25 H 1.09010 * 109.47108 * 63.22072 * 1 2 3 26 26 H 1.08994 * 109.47694 * 183.22369 * 1 2 3 27 27 H 1.08997 * 110.41189 * 98.47920 * 4 2 1 28 28 H 1.08997 * 110.41341 * 336.02865 * 4 2 1 29 29 H 1.09000 * 109.47656 * 180.70706 * 6 5 4 30 30 H 1.09006 * 109.47069 * 300.70579 * 6 5 4 31 31 H 0.97001 * 120.00389 * 185.01300 * 11 10 8 32 32 H 1.08994 * 117.50450 * 0.02562 * 16 7 6 33 33 H 1.09006 * 117.49606 * 145.02439 * 16 7 6 34 34 H 1.09005 * 117.49778 * 214.97763 * 17 7 6 35 35 H 1.08994 * 117.50329 * 0.02562 * 17 7 6 36 36 H 1.09004 * 110.41332 * 79.30049 * 18 5 4 37 37 H 1.09004 * 110.41096 * 201.62425 * 18 5 4 38 38 H 1.08999 * 109.47682 * 302.90705 * 20 19 2 39 39 H 1.09001 * 109.47524 * 62.91162 * 20 19 2 40 40 H 1.08999 * 109.47005 * 182.91256 * 20 19 2 41 41 H 0.96693 * 117.00244 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0661 -0.7723 -1.2244 5 7 3.2692 -1.4838 -0.7209 6 6 3.6067 -2.6234 -1.5840 7 6 3.9074 -2.1212 -2.9977 8 6 2.7260 -2.0625 -3.9316 9 1 2.3738 -1.1093 -4.2973 10 6 2.0950 -3.2256 -4.3190 11 7 2.6082 -4.3919 -3.9935 12 14 0.5113 -3.1447 -5.3063 13 1 0.8322 -3.1292 -6.7562 14 1 -0.3258 -4.3316 -4.9974 15 1 -0.2313 -1.9090 -4.9504 16 6 5.2675 -2.4788 -3.6000 17 6 4.9832 -1.0442 -3.1508 18 6 2.8805 -1.9416 0.6378 19 6 2.0657 -0.7693 1.2252 20 6 2.9674 0.1351 2.0678 21 6 0.9237 -1.2912 2.0586 22 8 0.6780 -2.4741 2.0734 23 8 0.1795 -0.4419 2.7842 24 1 -0.3633 0.5631 0.8597 25 1 -0.3634 0.4631 -0.9175 26 1 -0.3634 -1.0259 0.0578 27 1 2.3394 -0.0800 -2.0207 28 1 1.3229 -1.4865 -1.5788 29 1 4.4835 -3.1339 -1.1857 30 1 2.7660 -3.3166 -1.6159 31 1 2.2055 -5.2090 -4.3268 32 1 5.9481 -3.0722 -2.9894 33 1 5.3082 -2.6718 -4.6720 34 1 4.8367 -0.2933 -3.9273 35 1 5.4771 -0.6937 -2.2445 36 1 2.2646 -2.8388 0.5750 37 1 3.7669 -2.1317 1.2431 38 1 3.7812 0.5143 1.4497 39 1 2.3845 0.9712 2.4540 40 1 3.3790 -0.4360 2.8999 41 1 -0.5418 -0.8235 3.3031 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710179232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:03 Heat of formation + Delta-G solvation = -87.258998 kcal Electronic energy + Delta-G solvation = -21928.404397 eV Core-core repulsion = 18807.916883 eV Total energy + Delta-G solvation = -3120.487514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.05074 -39.83906 -38.03528 -37.12510 -34.33594 -34.00042 -32.46247 -28.32669 -27.73386 -27.21085 -25.42814 -23.91897 -22.77761 -22.12067 -20.72614 -20.38097 -18.80508 -18.16133 -17.36348 -17.05921 -16.66741 -16.17739 -15.77319 -15.46140 -15.28055 -14.61388 -14.30067 -14.20063 -13.94633 -13.67884 -13.45326 -13.19963 -13.04312 -12.97446 -12.81599 -12.62459 -12.48704 -12.35887 -12.25017 -12.03369 -11.88660 -11.68561 -11.46125 -11.30533 -11.14491 -10.81224 -10.41251 -9.98661 -9.28270 -8.10678 -6.18623 1.18103 1.35608 1.38713 1.46454 2.02623 2.39545 3.14677 3.20924 3.35148 3.53437 3.73708 3.87675 4.17688 4.29918 4.34905 4.44060 4.48215 4.62280 4.68008 4.71259 4.77311 4.81458 4.85822 4.97299 5.01741 5.07778 5.09423 5.10544 5.15660 5.28377 5.30159 5.32685 5.40114 5.58610 5.62504 5.69848 5.78356 6.10635 6.20043 6.44642 6.87970 6.99278 7.46560 8.96969 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.006880 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.946198 B = 4068.999476 C = 4710.470984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.076 4.076 3 H 0.118 0.882 4 C 0.057 3.943 5 N -0.491 5.491 6 C 0.108 3.892 7 C 0.028 3.972 8 C -0.494 4.494 9 H 0.054 0.946 10 C 0.024 3.976 11 N -0.909 5.909 12 Si 0.937 3.063 13 H -0.275 1.275 14 H -0.291 1.291 15 H -0.264 1.264 16 C -0.185 4.185 17 C -0.162 4.162 18 C 0.039 3.961 19 C -0.052 4.052 20 C -0.123 4.123 21 C 0.504 3.496 22 O -0.557 6.557 23 O -0.497 6.497 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.026 0.974 27 H 0.080 0.920 28 H 0.015 0.985 29 H 0.044 0.956 30 H 0.008 0.992 31 H 0.257 0.743 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.027 0.973 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 11.173 13.046 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.095 4.095 3 H 0.136 0.864 4 C -0.072 4.072 5 N -0.214 5.214 6 C -0.020 4.020 7 C 0.028 3.972 8 C -0.531 4.531 9 H 0.073 0.927 10 C -0.176 4.176 11 N -0.547 5.547 12 Si 0.763 3.237 13 H -0.201 1.201 14 H -0.217 1.217 15 H -0.189 1.189 16 C -0.223 4.223 17 C -0.199 4.199 18 C -0.089 4.089 19 C -0.054 4.054 20 C -0.180 4.180 21 C 0.347 3.653 22 O -0.448 6.448 23 O -0.310 6.310 24 H 0.111 0.889 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.098 0.902 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.045 0.955 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -1.971 11.164 12.868 17.149 hybrid contribution -1.970 -1.900 -0.743 2.836 sum -3.941 9.264 12.125 15.760 Atomic orbital electron populations 1.22079 0.94191 1.00738 1.04177 1.22089 0.96000 1.00516 0.90861 0.86370 1.22982 0.90670 0.96681 0.96818 1.65469 1.32501 1.22535 1.00937 1.21466 0.97552 0.90504 0.92470 1.18802 0.88256 0.98369 0.91809 1.20728 1.12698 0.92215 1.27505 0.92735 1.25620 0.99608 0.95378 0.97004 1.70088 1.41567 0.97649 1.45403 0.85870 0.80919 0.77605 0.79315 1.20054 1.21728 1.18863 1.22681 1.02361 0.98364 0.98889 1.22713 1.04925 0.90801 1.01486 1.23181 0.98561 0.95156 0.92036 1.21338 0.91932 0.97181 0.94929 1.21803 0.98954 0.98553 0.98718 1.23264 0.82078 0.83625 0.76287 1.90719 1.70164 1.20061 1.63841 1.84506 1.45616 1.43108 1.57807 0.88874 0.91118 0.95533 0.90161 0.96630 0.93736 0.97406 0.93379 0.91318 0.92362 0.90728 0.88922 0.95481 0.88745 0.89957 0.89467 0.91715 0.71439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 7.91 71.98 0.57 -3.37 16 2 C -0.08 -2.07 3.30 -9.90 -0.03 -2.10 16 3 H 0.12 2.62 7.71 -2.39 -0.02 2.61 16 4 C 0.06 2.12 4.55 86.45 0.39 2.51 16 5 N -0.49 -18.90 5.22 -881.49 -4.60 -23.51 16 6 C 0.11 5.10 4.80 86.31 0.41 5.51 16 7 C 0.03 1.38 0.90 -52.93 -0.05 1.33 16 8 C -0.49 -26.44 7.41 25.60 0.19 -26.25 16 9 H 0.05 2.89 7.82 -2.91 -0.02 2.87 16 10 C 0.02 1.31 5.20 84.66 0.44 1.75 16 11 N -0.91 -53.02 12.72 21.45 0.27 -52.75 16 12 Si 0.94 43.82 29.55 68.60 2.03 45.84 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 15 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 16 C -0.18 -8.69 9.88 30.59 0.30 -8.38 16 17 C -0.16 -6.83 9.73 30.59 0.30 -6.53 16 18 C 0.04 1.34 5.43 86.45 0.47 1.81 16 19 C -0.05 -1.39 0.97 -52.03 -0.05 -1.44 16 20 C -0.12 -2.37 8.09 71.98 0.58 -1.79 16 21 C 0.50 13.56 5.01 71.24 0.36 13.92 16 22 O -0.56 -19.74 16.17 21.96 0.36 -19.38 16 23 O -0.50 -8.81 11.46 -51.35 -0.59 -9.40 16 24 H 0.09 1.87 6.62 -2.39 -0.02 1.85 16 25 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.03 0.80 7.26 -2.39 -0.02 0.78 16 27 H 0.08 3.11 7.76 -2.39 -0.02 3.09 16 28 H 0.02 0.69 7.49 -2.39 -0.02 0.67 16 29 H 0.04 2.06 7.88 -2.39 -0.02 2.04 16 30 H 0.01 0.42 7.19 -2.38 -0.02 0.40 16 31 H 0.26 14.49 8.32 -92.71 -0.77 13.72 16 32 H 0.07 3.07 8.03 -2.39 -0.02 3.05 16 33 H 0.06 2.90 8.14 -2.38 -0.02 2.89 16 34 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 35 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 36 H 0.03 1.12 6.59 -2.39 -0.02 1.11 16 37 H 0.09 2.92 7.86 -2.38 -0.02 2.90 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.09 1.34 7.99 -2.39 -0.02 1.32 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.42 4.06 9.10 -74.06 -0.67 3.38 16 Total: -1.00 -66.26 326.11 1.69 -64.57 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.34 Total: 17.65 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 3.88 Total: -23.03 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -4.33 Total: -76.25 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.23 Total: -28.79 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -66.26 1.69 -64.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710179232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.686 kcal (2) G-P(sol) polarization free energy of solvation -66.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds