Wall clock time and date at job start Mon Mar 30 2020 05:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47541 * 2 1 4 4 C 1.37096 * 120.00267 * 264.76661 * 3 2 1 5 5 H 1.08001 * 119.99909 * 138.84854 * 4 3 2 6 6 C 1.38953 * 119.99912 * 318.85395 * 4 3 2 7 7 N 1.31409 * 119.99580 * 341.82966 * 6 4 3 8 8 Si 1.86797 * 119.99911 * 161.83080 * 6 4 3 9 9 H 1.48505 * 109.47327 * 59.99784 * 8 6 4 10 10 H 1.48501 * 109.46950 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47288 * 299.99585 * 8 6 4 12 12 C 1.34782 * 119.99838 * 84.76613 * 3 2 1 13 13 O 1.21290 * 119.99673 * 179.97438 * 12 3 2 14 14 C 1.50694 * 120.00103 * 0.02562 * 12 3 2 15 15 C 1.53003 * 109.47218 * 179.97438 * 14 12 3 16 16 H 1.08999 * 109.89886 * 54.48015 * 15 14 12 17 17 C 1.54453 * 109.83389 * 175.42348 * 15 14 12 18 18 C 1.55456 * 102.35939 * 140.86810 * 17 15 14 19 19 C 1.54089 * 100.80395 * 326.79310 * 18 17 15 20 20 C 1.52870 * 115.02715 * 265.38036 * 19 18 17 21 21 C 1.53947 * 86.90746 * 268.05512 * 20 19 18 22 22 C 1.52864 * 115.04507 * 165.24345 * 19 18 17 23 23 O 1.42645 * 106.35457 * 35.28119 * 19 18 17 24 24 H 1.09001 * 109.47332 * 300.00556 * 1 2 3 25 25 H 1.09010 * 109.46702 * 59.99883 * 1 2 3 26 26 H 1.08990 * 109.47744 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47332 * 239.99444 * 2 1 3 28 28 H 1.09003 * 109.47018 * 119.99962 * 2 1 3 29 29 H 0.97006 * 119.99295 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.46988 * 59.99685 * 14 12 3 31 31 H 1.09001 * 109.47490 * 299.99883 * 14 12 3 32 32 H 1.08999 * 110.82543 * 259.08883 * 17 15 14 33 33 H 1.09005 * 110.82656 * 22.45050 * 17 15 14 34 34 H 1.09008 * 111.15253 * 208.90919 * 18 17 15 35 35 H 1.09001 * 111.15453 * 84.68250 * 18 17 15 36 36 H 1.09003 * 113.65767 * 22.57641 * 20 19 18 37 37 H 1.08996 * 113.66059 * 153.53625 * 20 19 18 38 38 H 1.09000 * 113.59031 * 89.87564 * 21 20 19 39 39 H 1.09002 * 113.58868 * 220.69356 * 21 20 19 40 40 H 1.08998 * 113.65690 * 206.35821 * 22 19 18 41 41 H 1.08999 * 113.66076 * 337.30650 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3490 1.9914 -1.1823 5 1 2.0745 3.0218 -1.3534 6 6 3.0373 1.2840 -2.1605 7 7 3.6791 0.1816 -1.8450 8 14 3.0502 1.9004 -3.9238 9 1 3.6540 3.2564 -3.9698 10 1 3.8494 0.9744 -4.7659 11 1 1.6582 1.9606 -4.4374 12 6 2.1427 2.0520 1.1624 13 8 2.5475 3.1953 1.1624 14 6 1.7798 1.3811 2.4621 15 6 2.0117 2.3536 3.6202 16 1 1.4687 3.2814 3.4400 17 6 1.5347 1.7159 4.9436 18 6 2.6263 2.1794 5.9487 19 6 3.8677 2.2036 5.0362 20 6 4.7138 0.9306 5.0613 21 6 5.5364 1.5992 6.1777 22 6 5.0734 2.9526 5.6035 23 8 3.4140 2.6280 3.7521 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0275 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.1599 -0.3119 -2.5278 30 1 2.4018 0.4968 2.6005 31 1 0.7304 1.0871 2.4387 32 1 0.5561 2.1016 5.2290 33 1 1.5130 0.6289 4.8643 34 1 2.7471 1.4592 6.7580 35 1 2.4054 3.1729 6.3388 36 1 4.1659 0.0477 5.3907 37 1 5.2775 0.7619 4.1439 38 1 5.1571 1.3977 7.1795 39 1 6.6097 1.4308 6.0891 40 1 5.7393 3.3525 4.8388 41 1 4.8130 3.6876 6.3651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716945960.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:15 Heat of formation + Delta-G solvation = -61.619982 kcal Electronic energy + Delta-G solvation = -21471.678355 eV Core-core repulsion = 18352.302633 eV Total energy + Delta-G solvation = -3119.375723 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.33580 -38.36726 -36.24193 -34.72177 -32.21500 -31.82899 -30.06501 -29.31350 -25.93459 -25.59346 -24.24491 -22.63040 -22.13201 -20.94368 -18.87089 -18.46716 -16.62963 -16.46565 -16.01544 -15.49673 -15.04355 -14.80553 -14.47796 -13.97501 -13.47463 -13.24176 -12.96056 -12.80680 -12.39890 -12.11343 -11.99336 -11.83196 -11.66849 -11.51726 -11.20956 -11.01307 -10.97224 -10.94509 -10.88351 -10.61333 -10.34855 -10.28002 -10.25463 -10.11692 -9.99494 -8.96139 -8.79679 -8.18207 -7.27738 -6.20405 -3.88130 3.26740 3.31075 3.34918 4.01605 4.16993 4.26289 4.55586 4.66222 4.74545 4.82727 4.89510 5.07937 5.13368 5.25644 5.28910 5.48384 5.68496 5.71380 5.75431 5.79984 5.85036 5.90576 5.91491 5.94066 6.04014 6.05134 6.13596 6.17422 6.29436 6.36843 6.46543 6.48210 6.57520 6.64300 6.94224 7.29827 7.65446 7.69068 8.42587 8.67166 9.35003 9.54765 10.19984 10.85113 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025972 B = 0.005218 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.837085 B = 5364.241624 C = 5770.138081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.449 5.449 4 C -0.305 4.305 5 H 0.085 0.915 6 C 0.037 3.963 7 N -0.875 5.875 8 Si 0.916 3.084 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.469 3.531 13 O -0.568 6.568 14 C -0.146 4.146 15 C 0.101 3.899 16 H 0.082 0.918 17 C -0.152 4.152 18 C -0.128 4.128 19 C 0.077 3.923 20 C -0.150 4.150 21 C -0.139 4.139 22 C -0.129 4.129 23 O -0.334 6.334 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.102 0.898 28 H 0.045 0.955 29 H 0.266 0.734 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.967 -2.515 14.425 14.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.020 4.020 3 N -0.170 5.170 4 C -0.433 4.433 5 H 0.103 0.897 6 C -0.167 4.167 7 N -0.513 5.513 8 Si 0.743 3.257 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.256 3.744 13 O -0.450 6.450 14 C -0.187 4.187 15 C 0.043 3.957 16 H 0.099 0.901 17 C -0.189 4.189 18 C -0.166 4.166 19 C 0.037 3.963 20 C -0.188 4.188 21 C -0.177 4.177 22 C -0.166 4.166 23 O -0.252 6.252 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.120 0.880 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.518 -1.994 14.140 14.500 hybrid contribution -0.108 -0.156 -0.816 0.837 sum -2.626 -2.150 13.325 13.750 Atomic orbital electron populations 1.22234 0.98487 1.00168 1.01430 1.21397 0.91372 0.85948 1.03234 1.43435 1.56975 1.11662 1.04898 1.19299 1.34545 0.98371 0.91103 0.89731 1.25400 0.94194 0.96671 1.00441 1.69931 1.29814 1.17716 1.33851 0.86168 0.78235 0.78812 0.82460 1.19813 1.21082 1.20000 1.20229 0.81599 0.87892 0.84642 1.90534 1.49018 1.18723 1.86682 1.22083 1.02068 0.99545 0.94967 1.22470 0.82892 0.97680 0.92623 0.90054 1.23239 0.99211 1.01576 0.94904 1.22882 0.93907 1.02152 0.97660 1.23077 0.93269 0.95208 0.84784 1.23341 0.98632 0.97271 0.99525 1.22753 1.00162 0.96754 0.98026 1.23062 0.97049 0.96649 0.99845 1.88604 1.22928 1.81785 1.31892 0.93968 0.92470 0.93254 0.88044 0.93609 0.92435 0.89920 0.89757 0.90261 0.90490 0.90261 0.90326 0.91503 0.89133 0.90365 0.91061 0.89199 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.15 37.16 0.38 -2.62 16 2 C 0.10 2.33 5.41 -4.05 -0.02 2.31 16 3 N -0.45 -11.79 2.50 -114.82 -0.29 -12.08 16 4 C -0.31 -8.78 8.84 -14.93 -0.13 -8.91 16 5 H 0.09 2.54 7.82 -52.49 -0.41 2.13 16 6 C 0.04 1.01 4.95 -17.47 -0.09 0.92 16 7 N -0.87 -24.54 11.61 55.50 0.64 -23.89 16 8 Si 0.92 21.33 29.59 -169.99 -5.03 16.30 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 C 0.47 11.99 7.49 -10.99 -0.08 11.91 16 13 O -0.57 -16.73 15.40 -6.82 -0.10 -16.84 16 14 C -0.15 -2.81 3.88 -27.88 -0.11 -2.92 16 15 C 0.10 1.79 3.05 -25.97 -0.08 1.72 16 16 H 0.08 1.54 7.95 -51.93 -0.41 1.12 16 17 C -0.15 -1.91 6.56 -24.66 -0.16 -2.07 16 18 C -0.13 -1.51 6.21 -24.86 -0.15 -1.67 16 19 C 0.08 1.14 1.44 -90.19 -0.13 1.01 16 20 C -0.15 -2.03 7.57 -26.30 -0.20 -2.23 16 21 C -0.14 -1.54 7.92 -25.65 -0.20 -1.74 16 22 C -0.13 -1.67 7.64 -26.21 -0.20 -1.87 16 23 O -0.33 -6.67 10.17 -47.60 -0.48 -7.16 16 24 H 0.04 0.71 6.60 -51.93 -0.34 0.36 16 25 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.10 2.49 5.76 -51.93 -0.30 2.20 16 28 H 0.05 0.94 6.66 -51.93 -0.35 0.59 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.08 1.56 7.41 -51.93 -0.38 1.17 16 31 H 0.08 1.39 6.54 -51.93 -0.34 1.05 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 34 H 0.08 0.76 8.04 -51.92 -0.42 0.35 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -33.35 326.00 -8.25 -41.60 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.72 Total: 3.31 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.18 Total: -6.16 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.36 Total: -35.97 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.59 Total: -23.99 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.35 -8.25 -41.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716945960.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.015 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds