Wall clock time and date at job start Mon Mar 30 2020 05:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47541 * 2 1 4 4 C 1.37096 * 120.00267 * 264.76661 * 3 2 1 5 5 H 1.08001 * 119.99909 * 138.84854 * 4 3 2 6 6 C 1.38953 * 119.99912 * 318.85395 * 4 3 2 7 7 N 1.31409 * 119.99580 * 341.82966 * 6 4 3 8 8 Si 1.86797 * 119.99911 * 161.83080 * 6 4 3 9 9 H 1.48505 * 109.47327 * 59.99784 * 8 6 4 10 10 H 1.48501 * 109.46950 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47288 * 299.99585 * 8 6 4 12 12 C 1.34782 * 119.99838 * 84.76613 * 3 2 1 13 13 O 1.21290 * 119.99673 * 179.97438 * 12 3 2 14 14 C 1.50694 * 120.00103 * 0.02562 * 12 3 2 15 15 C 1.53003 * 109.47218 * 179.97438 * 14 12 3 16 16 H 1.08999 * 109.89886 * 54.48015 * 15 14 12 17 17 C 1.54453 * 109.83389 * 175.42348 * 15 14 12 18 18 C 1.55456 * 102.35939 * 140.86810 * 17 15 14 19 19 C 1.54089 * 100.80395 * 326.79310 * 18 17 15 20 20 C 1.52870 * 115.02715 * 265.38036 * 19 18 17 21 21 C 1.53947 * 86.90746 * 268.05512 * 20 19 18 22 22 C 1.52864 * 115.04507 * 165.24345 * 19 18 17 23 23 O 1.42645 * 106.35457 * 35.28119 * 19 18 17 24 24 H 1.09001 * 109.47332 * 300.00556 * 1 2 3 25 25 H 1.09010 * 109.46702 * 59.99883 * 1 2 3 26 26 H 1.08990 * 109.47744 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47332 * 239.99444 * 2 1 3 28 28 H 1.09003 * 109.47018 * 119.99962 * 2 1 3 29 29 H 0.97006 * 119.99295 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.46988 * 59.99685 * 14 12 3 31 31 H 1.09001 * 109.47490 * 299.99883 * 14 12 3 32 32 H 1.08999 * 110.82543 * 259.08883 * 17 15 14 33 33 H 1.09005 * 110.82656 * 22.45050 * 17 15 14 34 34 H 1.09008 * 111.15253 * 208.90919 * 18 17 15 35 35 H 1.09001 * 111.15453 * 84.68250 * 18 17 15 36 36 H 1.09003 * 113.65767 * 22.57641 * 20 19 18 37 37 H 1.08996 * 113.66059 * 153.53625 * 20 19 18 38 38 H 1.09000 * 113.59031 * 89.87564 * 21 20 19 39 39 H 1.09002 * 113.58868 * 220.69356 * 21 20 19 40 40 H 1.08998 * 113.65690 * 206.35821 * 22 19 18 41 41 H 1.08999 * 113.66076 * 337.30650 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3490 1.9914 -1.1823 5 1 2.0745 3.0218 -1.3534 6 6 3.0373 1.2840 -2.1605 7 7 3.6791 0.1816 -1.8450 8 14 3.0502 1.9004 -3.9238 9 1 3.6540 3.2564 -3.9698 10 1 3.8494 0.9744 -4.7659 11 1 1.6582 1.9606 -4.4374 12 6 2.1427 2.0520 1.1624 13 8 2.5475 3.1953 1.1624 14 6 1.7798 1.3811 2.4621 15 6 2.0117 2.3536 3.6202 16 1 1.4687 3.2814 3.4400 17 6 1.5347 1.7159 4.9436 18 6 2.6263 2.1794 5.9487 19 6 3.8677 2.2036 5.0362 20 6 4.7138 0.9306 5.0613 21 6 5.5364 1.5992 6.1777 22 6 5.0734 2.9526 5.6035 23 8 3.4140 2.6280 3.7521 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0275 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.1599 -0.3119 -2.5278 30 1 2.4018 0.4968 2.6005 31 1 0.7304 1.0871 2.4387 32 1 0.5561 2.1016 5.2290 33 1 1.5130 0.6289 4.8643 34 1 2.7471 1.4592 6.7580 35 1 2.4054 3.1729 6.3388 36 1 4.1659 0.0477 5.3907 37 1 5.2775 0.7619 4.1439 38 1 5.1571 1.3977 7.1795 39 1 6.6097 1.4308 6.0891 40 1 5.7393 3.3525 4.8388 41 1 4.8130 3.6876 6.3651 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716945960.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:14 Heat of formation + Delta-G solvation = -82.220942 kcal Electronic energy + Delta-G solvation = -21472.571680 eV Core-core repulsion = 18352.302633 eV Total energy + Delta-G solvation = -3120.269047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.51448 -40.23047 -37.51098 -36.69184 -34.11235 -33.21149 -31.48268 -31.06710 -27.51780 -26.68910 -25.87043 -23.95465 -23.54257 -22.25750 -20.53205 -19.74506 -18.66291 -17.81264 -17.54177 -17.04108 -16.65226 -16.19154 -16.01822 -15.63184 -15.07337 -14.62286 -14.50652 -14.17726 -13.78453 -13.60883 -13.55145 -13.23238 -12.93327 -12.87701 -12.79532 -12.64209 -12.51670 -12.28215 -12.21393 -12.07469 -11.86554 -11.80583 -11.75207 -11.39475 -11.12903 -10.86922 -10.25707 -10.20819 -9.35339 -8.31977 -6.08349 1.38247 1.38767 1.49422 2.14184 2.31145 2.91493 3.04301 3.16269 3.52665 3.67782 3.73090 3.89741 3.90302 4.07182 4.13436 4.20145 4.30522 4.49101 4.52682 4.61733 4.66582 4.72639 4.80032 4.83102 4.89401 4.91944 4.97454 4.99347 5.05293 5.06822 5.13108 5.25882 5.31694 5.38786 5.46182 5.51954 5.56411 6.25439 6.45842 6.61773 7.24014 7.52820 8.16544 8.71822 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025972 B = 0.005218 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.837085 B = 5364.241624 C = 5770.138081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.103 3.897 3 N -0.462 5.462 4 C -0.341 4.341 5 H 0.056 0.944 6 C 0.001 3.999 7 N -0.895 5.895 8 Si 0.982 3.018 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.261 1.261 12 C 0.450 3.550 13 O -0.622 6.622 14 C -0.130 4.130 15 C 0.094 3.906 16 H 0.056 0.944 17 C -0.139 4.139 18 C -0.117 4.117 19 C 0.055 3.945 20 C -0.155 4.155 21 C -0.118 4.118 22 C -0.137 4.137 23 O -0.385 6.385 24 H 0.058 0.942 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.272 0.728 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 -4.280 16.413 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 N -0.182 5.182 4 C -0.469 4.469 5 H 0.074 0.926 6 C -0.201 4.201 7 N -0.533 5.533 8 Si 0.805 3.195 9 H -0.206 1.206 10 H -0.195 1.195 11 H -0.185 1.185 12 C 0.240 3.760 13 O -0.508 6.508 14 C -0.170 4.170 15 C 0.036 3.964 16 H 0.075 0.925 17 C -0.176 4.176 18 C -0.154 4.154 19 C 0.016 3.984 20 C -0.193 4.193 21 C -0.155 4.155 22 C -0.174 4.174 23 O -0.304 6.304 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.780 -3.803 16.138 17.006 hybrid contribution 0.352 0.412 -1.459 1.557 sum -3.429 -3.392 14.679 15.451 Atomic orbital electron populations 1.22110 0.95017 1.02568 1.01393 1.21520 0.94172 0.83571 1.02751 1.43776 1.56888 1.13018 1.04551 1.19283 1.36462 0.97959 0.93237 0.92570 1.26176 0.93166 0.96712 1.04067 1.70006 1.29710 1.18371 1.35223 0.85195 0.78970 0.77898 0.77440 1.20615 1.19520 1.18521 1.21349 0.80601 0.87524 0.86530 1.90483 1.51331 1.21225 1.87744 1.22037 1.03833 0.99327 0.91817 1.22539 0.82349 0.96695 0.94809 0.92547 1.23209 1.00499 1.02226 0.91655 1.22902 0.91401 1.03605 0.97531 1.23601 0.95007 0.95978 0.83844 1.23312 0.98937 0.97849 0.99207 1.22738 1.00294 0.94023 0.98494 1.23105 0.96292 0.98312 0.99723 1.88567 1.24230 1.82561 1.35067 0.92342 0.94182 0.89523 0.90595 0.91912 0.91892 0.89414 0.86506 0.87716 0.88826 0.86915 0.89633 0.89504 0.92615 0.87098 0.90557 0.92092 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 10.15 71.98 0.73 -4.54 16 2 C 0.10 4.57 5.41 86.38 0.47 5.03 16 3 N -0.46 -25.03 2.50 -635.55 -1.59 -26.62 16 4 C -0.34 -20.49 8.84 84.04 0.74 -19.75 16 5 H 0.06 3.60 7.82 -2.91 -0.02 3.58 16 6 C 0.00 0.04 4.95 84.93 0.42 0.46 16 7 N -0.90 -50.99 11.61 21.66 0.25 -50.74 16 8 Si 0.98 44.50 29.59 68.60 2.03 46.53 16 9 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 12 C 0.45 23.90 7.49 87.65 0.66 24.56 16 13 O -0.62 -38.97 15.40 8.76 0.13 -38.83 16 14 C -0.13 -4.96 3.88 29.85 0.12 -4.84 16 15 C 0.09 3.31 3.05 31.09 0.09 3.41 16 16 H 0.06 2.21 7.95 -2.39 -0.02 2.19 16 17 C -0.14 -3.03 6.56 31.93 0.21 -2.82 16 18 C -0.12 -2.35 6.21 31.81 0.20 -2.15 16 19 C 0.06 1.58 1.44 -10.52 -0.02 1.56 16 20 C -0.16 -4.02 7.57 30.87 0.23 -3.79 16 21 C -0.12 -2.33 7.92 31.30 0.25 -2.08 16 22 C -0.14 -3.49 7.64 30.93 0.24 -3.25 16 23 O -0.38 -15.89 10.17 -137.16 -1.39 -17.28 16 24 H 0.06 1.81 6.60 -2.39 -0.02 1.79 16 25 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.08 3.76 5.76 -2.39 -0.01 3.75 16 28 H 0.06 2.51 6.66 -2.39 -0.02 2.49 16 29 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 30 H 0.09 3.24 7.41 -2.39 -0.02 3.22 16 31 H 0.12 3.60 6.54 -2.39 -0.02 3.58 16 32 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 1.76 7.85 -2.38 -0.02 1.74 16 34 H 0.11 1.55 8.04 -2.38 -0.02 1.53 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.85 8.11 -2.39 -0.02 1.83 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.09 1.86 8.11 -2.39 -0.02 1.84 16 Total: -1.00 -78.62 326.00 4.77 -73.85 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 1.00 Total: 21.31 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 4.34 Total: -8.21 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -1.34 Total: -77.36 kcal Atomic # 8 Polarization: -54.85 SS G_CDS: -1.26 Total: -56.11 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -78.62 4.77 -73.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716945960.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.372 kcal (2) G-P(sol) polarization free energy of solvation -78.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds