Wall clock time and date at job start Mon Mar 30 2020 05:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46508 * 109.47077 * 2 1 4 4 C 1.37097 * 119.99909 * 95.20310 * 3 2 1 5 5 H 1.07998 * 119.99959 * 213.43072 * 4 3 2 6 6 C 1.38950 * 120.00099 * 33.43374 * 4 3 2 7 7 N 1.31418 * 120.00103 * 28.28877 * 6 4 3 8 8 Si 1.86801 * 120.00139 * 208.28529 * 6 4 3 9 9 H 1.48504 * 109.46840 * 90.00231 * 8 6 4 10 10 H 1.48493 * 109.47205 * 330.00272 * 8 6 4 11 11 H 1.48495 * 109.47376 * 209.99830 * 8 6 4 12 12 C 1.34776 * 119.99701 * 275.21034 * 3 2 1 13 13 O 1.21296 * 119.99656 * 180.02562 * 12 3 2 14 14 C 1.50692 * 120.00196 * 359.97438 * 12 3 2 15 15 C 1.53001 * 109.47422 * 180.02562 * 14 12 3 16 16 H 1.09000 * 110.29578 * 307.15205 * 15 14 12 17 17 C 1.54540 * 110.33651 * 184.99869 * 15 14 12 18 18 C 1.54717 * 104.07497 * 217.44718 * 17 15 14 19 19 C 1.53550 * 103.75115 * 0.69948 * 18 17 15 20 20 C 1.52823 * 115.46450 * 253.20600 * 19 18 17 21 21 C 1.53960 * 86.78903 * 217.65836 * 20 19 18 22 22 C 1.52800 * 115.48959 * 152.49963 * 19 18 17 23 23 O 1.43349 * 106.13085 * 22.82574 * 19 18 17 24 24 H 1.08999 * 109.47249 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47617 * 299.99973 * 1 2 3 26 26 H 1.08995 * 109.47488 * 60.00109 * 1 2 3 27 27 H 1.08998 * 109.47617 * 240.00026 * 2 1 3 28 28 H 1.09001 * 109.47041 * 119.99361 * 2 1 3 29 29 H 0.97005 * 119.99384 * 6.27025 * 7 6 4 30 30 H 1.09004 * 109.47237 * 300.00460 * 14 12 3 31 31 H 1.09006 * 109.47495 * 60.00071 * 14 12 3 32 32 H 1.08998 * 110.50993 * 336.09904 * 17 15 14 33 33 H 1.09003 * 110.50677 * 98.66182 * 17 15 14 34 34 H 1.08996 * 110.56963 * 119.26283 * 18 17 15 35 35 H 1.09004 * 110.56885 * 241.98332 * 18 17 15 36 36 H 1.08995 * 113.65772 * 332.13021 * 20 19 18 37 37 H 1.08999 * 113.65906 * 103.18268 * 20 19 18 38 38 H 1.09006 * 113.58149 * 270.11849 * 21 20 19 39 39 H 1.08993 * 113.58763 * 139.30740 * 21 20 19 40 40 H 1.09009 * 113.65923 * 256.79746 * 22 19 18 41 41 H 1.09000 * 113.66012 * 27.84151 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3483 1.9917 1.1824 5 1 2.1864 3.0522 1.3062 6 6 2.8911 1.2458 2.2215 7 7 3.5910 0.1650 1.9588 8 14 2.6261 1.7794 3.9920 9 1 1.3880 1.1506 4.5184 10 1 2.4935 3.2573 4.0490 11 1 3.7860 1.3543 4.8160 12 6 2.1430 2.0519 -1.1624 13 8 2.5477 3.1953 -1.1624 14 6 1.7806 1.3808 -2.4621 15 6 2.0129 2.3532 -3.6203 16 1 1.4959 3.2943 -3.4334 17 6 1.5302 1.7301 -4.9496 18 6 2.5725 2.2068 -5.9889 19 6 3.5606 3.0395 -5.1594 20 6 3.4754 4.5521 -5.3601 21 6 5.0101 4.5676 -5.2385 22 6 4.9876 3.0998 -5.7025 23 8 3.4284 2.5835 -3.8069 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.8059 -0.0623 1.0406 30 1 2.4027 0.4965 -2.6002 31 1 0.7312 1.0867 -2.4390 32 1 1.5276 0.6422 -4.8827 33 1 0.5367 2.0984 -5.2055 34 1 3.0774 1.3545 -6.4436 35 1 2.0975 2.8216 -6.7535 36 1 3.1118 4.8428 -6.3456 37 1 2.9670 5.0730 -4.5488 38 1 5.3653 4.6964 -4.2160 39 1 5.4968 5.2406 -5.9442 40 1 5.6876 2.4602 -5.1647 41 1 5.0493 2.9819 -6.7843 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716945963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:16 Heat of formation + Delta-G solvation = -60.507628 kcal Electronic energy + Delta-G solvation = -21441.387985 eV Core-core repulsion = 18322.060497 eV Total energy + Delta-G solvation = -3119.327487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.38114 -38.58342 -36.18950 -35.01283 -32.25340 -31.87223 -30.25636 -29.44069 -26.08469 -25.57543 -24.20746 -22.56311 -21.96025 -20.85178 -19.14944 -18.90926 -17.20813 -16.45874 -15.71429 -15.42560 -15.17190 -14.90236 -14.40614 -13.97626 -13.73033 -13.46830 -13.00423 -12.90444 -12.72545 -12.45010 -12.35016 -11.93265 -11.59066 -11.27245 -11.23567 -11.11926 -10.95895 -10.87490 -10.80408 -10.60728 -10.33099 -10.26104 -10.17379 -10.02060 -9.80146 -9.22222 -8.82591 -8.26512 -7.64132 -6.52626 -3.85513 3.35185 3.40680 3.59581 3.86964 4.02393 4.28108 4.56977 4.61683 4.66567 4.86476 4.88882 5.04832 5.11382 5.20800 5.27023 5.44270 5.56759 5.62361 5.64706 5.71627 5.77394 5.79381 5.85593 5.96372 5.98167 6.00432 6.04859 6.13892 6.17749 6.26356 6.36205 6.40357 6.42081 6.48555 6.75296 6.92396 7.34007 8.03169 8.19155 8.76160 9.05275 9.50774 10.01426 10.70913 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027190 B = 0.005131 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.534769 B = 5456.194080 C = 6033.717573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.086 3.914 3 N -0.456 5.456 4 C -0.393 4.393 5 H 0.083 0.917 6 C 0.006 3.994 7 N -0.878 5.878 8 Si 1.073 2.927 9 H -0.285 1.285 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.458 3.542 13 O -0.567 6.567 14 C -0.132 4.132 15 C 0.099 3.901 16 H 0.073 0.927 17 C -0.153 4.153 18 C -0.137 4.137 19 C 0.078 3.922 20 C -0.157 4.157 21 C -0.134 4.134 22 C -0.129 4.129 23 O -0.325 6.325 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.274 0.726 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 0.364 -14.679 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.038 4.038 3 N -0.177 5.177 4 C -0.521 4.521 5 H 0.101 0.899 6 C -0.200 4.200 7 N -0.513 5.513 8 Si 0.900 3.100 9 H -0.212 1.212 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.246 3.754 13 O -0.449 6.449 14 C -0.172 4.172 15 C 0.041 3.959 16 H 0.091 0.909 17 C -0.191 4.191 18 C -0.175 4.175 19 C 0.038 3.962 20 C -0.195 4.195 21 C -0.172 4.172 22 C -0.166 4.166 23 O -0.244 6.244 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.207 0.461 -12.916 13.316 hybrid contribution -0.513 0.271 -1.761 1.854 sum -3.720 0.732 -14.677 15.158 Atomic orbital electron populations 1.22131 0.97420 1.00507 1.01793 1.21590 0.93237 0.86067 1.02919 1.43648 1.56819 1.11732 1.05496 1.20266 1.44404 0.96820 0.90583 0.89905 1.26308 0.92774 0.95764 1.05204 1.70719 1.29496 1.27495 1.23556 0.83433 0.76661 0.75846 0.74054 1.21160 1.20963 1.21012 1.20169 0.82539 0.88157 0.84513 1.90535 1.49257 1.18579 1.86551 1.21772 1.02350 0.99158 0.93947 1.22688 0.82556 0.97700 0.92916 0.90931 1.23063 0.99203 1.01629 0.95200 1.22733 0.96715 1.00024 0.98042 1.22581 0.95848 0.93582 0.84234 1.23331 0.97398 0.96736 1.02045 1.22807 0.96146 0.96156 1.02062 1.22894 0.95669 0.97733 1.00354 1.89141 1.23552 1.85406 1.26279 0.92945 0.92109 0.93724 0.93111 0.88536 0.91523 0.89646 0.89244 0.90711 0.90727 0.90766 0.90777 0.89814 0.90563 0.89580 0.91708 0.90559 0.89295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.15 37.16 0.38 -2.50 16 2 C 0.09 1.87 4.96 -4.04 -0.02 1.85 16 3 N -0.46 -11.79 2.36 -114.81 -0.27 -12.06 16 4 C -0.39 -11.34 8.89 -14.93 -0.13 -11.47 16 5 H 0.08 2.56 7.74 -52.49 -0.41 2.15 16 6 C 0.01 0.16 4.75 -17.47 -0.08 0.07 16 7 N -0.88 -25.06 12.15 55.50 0.67 -24.39 16 8 Si 1.07 24.48 30.00 -169.99 -5.10 19.38 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.46 11.55 7.52 -10.99 -0.08 11.46 16 13 O -0.57 -16.54 15.42 -1.39 -0.02 -16.56 16 14 C -0.13 -2.50 3.93 -27.89 -0.11 -2.61 16 15 C 0.10 1.74 2.76 -25.92 -0.07 1.67 16 16 H 0.07 1.37 7.91 -51.93 -0.41 0.96 16 17 C -0.15 -1.96 6.64 -25.02 -0.17 -2.13 16 18 C -0.14 -1.63 6.48 -25.54 -0.17 -1.79 16 19 C 0.08 1.14 1.13 -90.54 -0.10 1.04 16 20 C -0.16 -2.11 7.57 -26.32 -0.20 -2.30 16 21 C -0.13 -1.76 8.09 -25.74 -0.21 -1.96 16 22 C -0.13 -1.64 7.61 -26.34 -0.20 -1.84 16 23 O -0.33 -6.37 10.69 -42.16 -0.45 -6.82 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.04 0.74 6.60 -51.93 -0.34 0.39 16 27 H 0.05 0.98 6.66 -51.93 -0.35 0.63 16 28 H 0.10 2.32 5.44 -51.93 -0.28 2.04 16 29 H 0.27 7.92 7.32 -40.82 -0.30 7.63 16 30 H 0.09 1.56 7.41 -51.93 -0.38 1.17 16 31 H 0.09 1.45 6.54 -51.93 -0.34 1.11 16 32 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.07 0.73 7.85 -51.93 -0.41 0.33 16 36 H 0.08 0.90 7.97 -51.93 -0.41 0.48 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 324.96 15.07 4.90 4.90 Total: -1.00 -33.49 324.96 -8.08 -41.56 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.64 Total: 4.49 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -1.16 Total: -10.50 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.40 Total: -36.45 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.47 Total: -23.38 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.10 Total: 19.38 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.49 -8.08 -41.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716945963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.943 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds