Wall clock time and date at job start Mon Mar 30 2020 04:48:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42910 * 1
3 3 C 1.42897 * 113.99484 * 2 1
4 4 C 1.53008 * 109.46638 * 180.02562 * 3 2 1
5 5 N 1.46497 * 109.47249 * 65.00152 * 4 3 2
6 6 C 1.37099 * 120.00417 * 89.99784 * 5 4 3
7 7 H 1.07997 * 120.00205 * 214.04873 * 6 5 4
8 8 C 1.38948 * 119.99563 * 34.05190 * 6 5 4
9 9 N 1.31416 * 120.00244 * 19.75098 * 8 6 5
10 10 Si 1.86803 * 119.99926 * 199.74270 * 8 6 5
11 11 H 1.48500 * 109.46919 * 90.00306 * 10 8 6
12 12 H 1.48501 * 109.47092 * 210.00397 * 10 8 6
13 13 H 1.48500 * 109.46727 * 330.00586 * 10 8 6
14 14 C 1.34786 * 119.99745 * 269.99792 * 5 4 3
15 15 O 1.21295 * 119.99828 * 4.38427 * 14 5 4
16 16 C 1.50691 * 120.00057 * 184.38243 * 14 5 4
17 17 H 1.09006 * 115.54952 * 334.44544 * 16 14 5
18 18 C 1.52997 * 117.50044 * 188.74248 * 16 14 5
19 19 C 1.53002 * 117.50226 * 120.11666 * 16 14 5
20 20 H 1.09000 * 117.50126 * 215.00234 * 19 16 14
21 21 C 1.53000 * 117.49469 * 359.97438 * 19 16 14
22 22 H 1.09003 * 115.54814 * 85.72344 * 21 19 16
23 23 C 1.52996 * 117.50085 * 231.39137 * 21 19 16
24 24 C 1.52996 * 60.00133 * 107.49161 * 23 21 19
25 25 H 1.09003 * 117.49689 * 252.51097 * 24 23 21
26 26 C 1.52995 * 117.50013 * 107.49024 * 24 23 21
27 27 H 1.08996 * 109.46954 * 300.00468 * 1 2 3
28 28 H 1.08998 * 109.46553 * 180.02562 * 1 2 3
29 29 H 1.08998 * 109.46852 * 60.00355 * 1 2 3
30 30 H 1.08998 * 109.47377 * 299.99242 * 3 2 1
31 31 H 1.08995 * 109.47988 * 60.00183 * 3 2 1
32 32 H 1.09004 * 109.47027 * 184.99859 * 4 3 2
33 33 H 1.09000 * 109.47419 * 304.99682 * 4 3 2
34 34 H 0.96999 * 119.99863 * 174.95511 * 9 8 6
35 35 H 1.08999 * 117.49916 * 359.97438 * 18 16 14
36 36 H 1.09002 * 117.50406 * 145.02481 * 18 16 14
37 37 H 1.09000 * 117.50120 * 214.98011 * 23 21 19
38 38 H 1.09005 * 117.49825 * 359.97438 * 23 21 19
39 39 H 1.09002 * 109.47263 * 351.38396 * 26 24 23
40 40 H 1.09007 * 109.47042 * 111.37482 * 26 24 23
41 41 H 1.08996 * 109.47639 * 231.37927 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1847 -0.0006
5 7 3.9757 0.5645 -1.2527
6 6 4.2665 1.3470 -2.3403
7 1 4.0569 0.9865 -3.3365
8 6 4.8308 2.6040 -2.1607
9 7 5.4379 2.8966 -1.0325
10 14 4.7266 3.8779 -3.5230
11 1 3.4900 4.6826 -3.3546
12 1 5.9112 4.7710 -3.4572
13 1 4.6958 3.1926 -4.8400
14 6 4.0949 -0.7755 -1.3355
15 8 3.7623 -1.4729 -0.4005
16 6 4.6415 -1.4073 -2.5897
17 1 4.5145 -0.8257 -3.5029
18 6 4.5629 -2.9309 -2.7053
19 6 5.9114 -2.2508 -2.4603
20 1 6.6198 -2.2242 -3.2882
21 6 6.5295 -2.3878 -1.0674
22 1 6.1197 -3.1853 -0.4476
23 6 8.0202 -2.0754 -0.9222
24 6 6.9773 -1.1051 -0.3639
25 1 6.8317 -0.1635 -0.8935
26 6 6.8155 -1.0395 1.1560
27 1 -0.3633 0.5139 0.8899
28 1 -0.3632 -1.0277 0.0005
29 1 -0.3633 0.5138 -0.8900
30 1 1.6887 1.8463 -0.8900
31 1 1.6886 1.8465 0.8899
32 1 3.9786 2.1766 0.0889
33 1 3.8516 0.5683 0.8409
34 1 5.8949 3.7465 -0.9340
35 1 4.1162 -3.4763 -1.8740
36 1 4.3841 -3.3521 -3.6946
37 1 8.5910 -2.6671 -0.2066
38 1 8.5607 -1.7727 -1.8191
39 1 7.3953 -1.8387 1.6179
40 1 7.1729 -0.0755 1.5182
41 1 5.7634 -1.1576 1.4149
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000717215590.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:48:57
Heat of formation + Delta-G solvation = -26.206454 kcal
Electronic energy + Delta-G solvation = -22025.917364 eV
Core-core repulsion = 18908.077287 eV
Total energy + Delta-G solvation = -3117.840077 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-39.15737 -37.48568 -36.56329 -34.95744 -34.15776 -31.45879 -29.22086 -27.89282
-25.77518 -24.83258 -23.68987 -22.74534 -20.97053 -20.29021 -19.45522 -18.62714
-16.53938 -16.21657 -15.54690 -15.21779 -14.62551 -14.56311 -14.26808 -14.08602
-13.65591 -13.34423 -12.99412 -12.56271 -12.26645 -11.88255 -11.70183 -11.51987
-11.34155 -11.18811 -11.04405 -10.96861 -10.84185 -10.52715 -10.43102 -10.24500
-10.19962 -9.89498 -9.82243 -9.17411 -9.05232 -8.90834 -8.69585 -8.14590
-7.37389 -6.30294 -3.96013 3.11523 3.22054 3.23239 3.80733 4.11157
4.47016 4.61289 4.67726 4.81966 5.08374 5.34417 5.46035 5.59050
5.71334 5.77397 5.78976 5.87721 5.95866 6.02928 6.04690 6.08193
6.13241 6.22807 6.25348 6.28253 6.40718 6.43589 6.55138 6.55230
6.76011 6.79890 6.85706 6.92053 7.05977 7.18612 7.31735 7.55266
7.97355 8.03843 8.49465 9.18628 9.70768 10.16457 10.70701
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.012801 B = 0.009605 C = 0.007178
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2186.876810 B = 2914.440623 C = 3899.663362
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.364 6.364
3 C 0.048 3.952
4 C 0.115 3.885
5 N -0.440 5.440
6 C -0.324 4.324
7 H 0.086 0.914
8 C 0.039 3.961
9 N -0.868 5.868
10 Si 0.911 3.089
11 H -0.279 1.279
12 H -0.285 1.285
13 H -0.271 1.271
14 C 0.517 3.483
15 O -0.579 6.579
16 C -0.151 4.151
17 H 0.112 0.888
18 C -0.160 4.160
19 C -0.099 4.099
20 H 0.100 0.900
21 C -0.108 4.108
22 H 0.100 0.900
23 C -0.188 4.188
24 C -0.128 4.128
25 H 0.116 0.884
26 C -0.114 4.114
27 H 0.028 0.972
28 H 0.074 0.926
29 H 0.030 0.970
30 H 0.044 0.956
31 H 0.035 0.965
32 H 0.127 0.873
33 H 0.059 0.941
34 H 0.269 0.731
35 H 0.100 0.900
36 H 0.087 0.913
37 H 0.084 0.916
38 H 0.086 0.914
39 H 0.040 0.960
40 H 0.054 0.946
41 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.745 -3.717 -0.575 3.835
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.283 6.283
3 C -0.030 4.030
4 C -0.009 4.009
5 N -0.159 5.159
6 C -0.453 4.453
7 H 0.104 0.896
8 C -0.165 4.165
9 N -0.506 5.506
10 Si 0.739 3.261
11 H -0.205 1.205
12 H -0.210 1.210
13 H -0.196 1.196
14 C 0.306 3.694
15 O -0.462 6.462
16 C -0.172 4.172
17 H 0.130 0.870
18 C -0.198 4.198
19 C -0.118 4.118
20 H 0.118 0.882
21 C -0.127 4.127
22 H 0.118 0.882
23 C -0.225 4.225
24 C -0.146 4.146
25 H 0.134 0.866
26 C -0.171 4.171
27 H 0.047 0.953
28 H 0.093 0.907
29 H 0.049 0.951
30 H 0.063 0.937
31 H 0.053 0.947
32 H 0.144 0.856
33 H 0.077 0.923
34 H 0.079 0.921
35 H 0.119 0.881
36 H 0.105 0.895
37 H 0.102 0.898
38 H 0.104 0.896
39 H 0.059 0.941
40 H 0.073 0.927
41 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -0.751 -4.011 0.014 4.081
hybrid contribution -0.273 1.186 -0.924 1.528
sum -1.023 -2.825 -0.911 3.140
Atomic orbital electron populations
1.22611 0.83781 1.01485 0.98666 1.88201 1.17114 1.27924 1.95011
1.23148 0.97011 0.84320 0.98483 1.21607 0.89066 1.02590 0.87662
1.43158 1.57930 1.03608 1.11166 1.19428 1.40699 0.97824 0.87314
0.89622 1.25276 0.95093 0.98959 0.97212 1.69703 1.31181 1.24201
1.25531 0.86174 0.77779 0.80805 0.81359 1.20510 1.21045 1.19583
1.19145 0.80247 0.82907 0.87149 1.90515 1.53530 1.62308 1.39849
1.22260 1.01871 0.92803 1.00269 0.86984 1.22953 0.99846 0.94805
1.02157 1.21621 0.89819 1.03995 0.96384 0.88210 1.21626 0.94914
1.00411 0.95709 0.88219 1.23149 0.91830 1.04677 1.02872 1.22327
1.01218 0.95176 0.95868 0.86605 1.21267 1.02096 1.00408 0.93332
0.95320 0.90698 0.95124 0.93730 0.94708 0.85560 0.92290 0.92070
0.88150 0.89457 0.89787 0.89567 0.94083 0.92738 0.91551
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.53 11.01 101.05 1.11 1.65 16
2 O -0.36 -8.04 9.31 -47.67 -0.44 -8.48 16
3 C 0.05 1.03 6.28 37.16 0.23 1.26 16
4 C 0.11 2.73 5.44 -4.04 -0.02 2.71 16
5 N -0.44 -10.84 2.53 -114.81 -0.29 -11.13 16
6 C -0.32 -8.05 8.67 -14.93 -0.13 -8.18 16
7 H 0.09 2.09 6.48 -52.49 -0.34 1.75 16
8 C 0.04 0.94 5.04 -17.47 -0.09 0.86 16
9 N -0.87 -21.87 11.10 55.50 0.62 -21.25 16
10 Si 0.91 19.19 29.60 -169.99 -5.03 14.16 16
11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16
12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16
13 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16
14 C 0.52 12.47 5.27 -10.99 -0.06 12.41 16
15 O -0.58 -15.00 14.32 -6.89 -0.10 -15.10 16
16 C -0.15 -3.16 5.47 -91.78 -0.50 -3.66 16
17 H 0.11 2.32 6.46 -51.93 -0.34 1.98 16
18 C -0.16 -2.87 9.76 -26.73 -0.26 -3.13 16
19 C -0.10 -1.82 5.87 -90.62 -0.53 -2.36 16
20 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16
21 C -0.11 -2.02 4.55 -90.62 -0.41 -2.43 16
22 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16
23 C -0.19 -3.12 9.90 -26.74 -0.26 -3.38 16
24 C -0.13 -2.53 4.90 -90.62 -0.44 -2.97 16
25 H 0.12 2.72 8.06 -51.93 -0.42 2.30 16
26 C -0.11 -2.15 10.19 37.15 0.38 -1.77 16
27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16
28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16
30 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16
31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16
32 H 0.13 3.14 5.19 -51.93 -0.27 2.87 16
33 H 0.06 1.47 7.49 -51.93 -0.39 1.08 16
34 H 0.27 6.47 8.32 -40.82 -0.34 6.13 16
35 H 0.10 1.93 7.70 -51.93 -0.40 1.53 16
36 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16
37 H 0.08 1.24 8.05 -51.93 -0.42 0.83 16
38 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16
39 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16
40 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16
41 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16
LS Contribution 335.72 15.07 5.06 5.06
Total: -1.00 -27.79 335.72 -7.94 -35.73
By element:
Atomic # 1 Polarization: 16.77 SS G_CDS: -6.77 Total: 10.00 kcal
Atomic # 6 Polarization: -8.01 SS G_CDS: -0.99 Total: -9.00 kcal
Atomic # 7 Polarization: -32.70 SS G_CDS: 0.33 Total: -32.38 kcal
Atomic # 8 Polarization: -23.03 SS G_CDS: -0.54 Total: -23.58 kcal
Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -27.79 -7.94 -35.73 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000717215590.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.526 kcal
(2) G-P(sol) polarization free energy of solvation -27.789 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.263 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.732 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.206 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds