Wall clock time and date at job start Mon Mar 30 2020 04:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42897 * 113.99484 * 2 1 4 4 C 1.53008 * 109.46638 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47249 * 65.00152 * 4 3 2 6 6 C 1.37099 * 120.00417 * 89.99784 * 5 4 3 7 7 H 1.07997 * 120.00205 * 214.04873 * 6 5 4 8 8 C 1.38948 * 119.99563 * 34.05190 * 6 5 4 9 9 N 1.31416 * 120.00244 * 19.75098 * 8 6 5 10 10 Si 1.86803 * 119.99926 * 199.74270 * 8 6 5 11 11 H 1.48500 * 109.46919 * 90.00306 * 10 8 6 12 12 H 1.48501 * 109.47092 * 210.00397 * 10 8 6 13 13 H 1.48500 * 109.46727 * 330.00586 * 10 8 6 14 14 C 1.34786 * 119.99745 * 269.99792 * 5 4 3 15 15 O 1.21295 * 119.99828 * 4.38427 * 14 5 4 16 16 C 1.50691 * 120.00057 * 184.38243 * 14 5 4 17 17 H 1.09006 * 115.54952 * 334.44544 * 16 14 5 18 18 C 1.52997 * 117.50044 * 188.74248 * 16 14 5 19 19 C 1.53002 * 117.50226 * 120.11666 * 16 14 5 20 20 H 1.09000 * 117.50126 * 215.00234 * 19 16 14 21 21 C 1.53000 * 117.49469 * 359.97438 * 19 16 14 22 22 H 1.09003 * 115.54814 * 85.72344 * 21 19 16 23 23 C 1.52996 * 117.50085 * 231.39137 * 21 19 16 24 24 C 1.52996 * 60.00133 * 107.49161 * 23 21 19 25 25 H 1.09003 * 117.49689 * 252.51097 * 24 23 21 26 26 C 1.52995 * 117.50013 * 107.49024 * 24 23 21 27 27 H 1.08996 * 109.46954 * 300.00468 * 1 2 3 28 28 H 1.08998 * 109.46553 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46852 * 60.00355 * 1 2 3 30 30 H 1.08998 * 109.47377 * 299.99242 * 3 2 1 31 31 H 1.08995 * 109.47988 * 60.00183 * 3 2 1 32 32 H 1.09004 * 109.47027 * 184.99859 * 4 3 2 33 33 H 1.09000 * 109.47419 * 304.99682 * 4 3 2 34 34 H 0.96999 * 119.99863 * 174.95511 * 9 8 6 35 35 H 1.08999 * 117.49916 * 359.97438 * 18 16 14 36 36 H 1.09002 * 117.50406 * 145.02481 * 18 16 14 37 37 H 1.09000 * 117.50120 * 214.98011 * 23 21 19 38 38 H 1.09005 * 117.49825 * 359.97438 * 23 21 19 39 39 H 1.09002 * 109.47263 * 351.38396 * 26 24 23 40 40 H 1.09007 * 109.47042 * 111.37482 * 26 24 23 41 41 H 1.08996 * 109.47639 * 231.37927 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2665 1.3470 -2.3403 7 1 4.0569 0.9865 -3.3365 8 6 4.8308 2.6040 -2.1607 9 7 5.4379 2.8966 -1.0325 10 14 4.7266 3.8779 -3.5230 11 1 3.4900 4.6826 -3.3546 12 1 5.9112 4.7710 -3.4572 13 1 4.6958 3.1926 -4.8400 14 6 4.0949 -0.7755 -1.3355 15 8 3.7623 -1.4729 -0.4005 16 6 4.6415 -1.4073 -2.5897 17 1 4.5145 -0.8257 -3.5029 18 6 4.5629 -2.9309 -2.7053 19 6 5.9114 -2.2508 -2.4603 20 1 6.6198 -2.2242 -3.2882 21 6 6.5295 -2.3878 -1.0674 22 1 6.1197 -3.1853 -0.4476 23 6 8.0202 -2.0754 -0.9222 24 6 6.9773 -1.1051 -0.3639 25 1 6.8317 -0.1635 -0.8935 26 6 6.8155 -1.0395 1.1560 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.6887 1.8463 -0.8900 31 1 1.6886 1.8465 0.8899 32 1 3.9786 2.1766 0.0889 33 1 3.8516 0.5683 0.8409 34 1 5.8949 3.7465 -0.9340 35 1 4.1162 -3.4763 -1.8740 36 1 4.3841 -3.3521 -3.6946 37 1 8.5910 -2.6671 -0.2066 38 1 8.5607 -1.7727 -1.8191 39 1 7.3953 -1.8387 1.6179 40 1 7.1729 -0.0755 1.5182 41 1 5.7634 -1.1576 1.4149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717215590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:57 Heat of formation + Delta-G solvation = -26.206454 kcal Electronic energy + Delta-G solvation = -22025.917364 eV Core-core repulsion = 18908.077287 eV Total energy + Delta-G solvation = -3117.840077 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.15737 -37.48568 -36.56329 -34.95744 -34.15776 -31.45879 -29.22086 -27.89282 -25.77518 -24.83258 -23.68987 -22.74534 -20.97053 -20.29021 -19.45522 -18.62714 -16.53938 -16.21657 -15.54690 -15.21779 -14.62551 -14.56311 -14.26808 -14.08602 -13.65591 -13.34423 -12.99412 -12.56271 -12.26645 -11.88255 -11.70183 -11.51987 -11.34155 -11.18811 -11.04405 -10.96861 -10.84185 -10.52715 -10.43102 -10.24500 -10.19962 -9.89498 -9.82243 -9.17411 -9.05232 -8.90834 -8.69585 -8.14590 -7.37389 -6.30294 -3.96013 3.11523 3.22054 3.23239 3.80733 4.11157 4.47016 4.61289 4.67726 4.81966 5.08374 5.34417 5.46035 5.59050 5.71334 5.77397 5.78976 5.87721 5.95866 6.02928 6.04690 6.08193 6.13241 6.22807 6.25348 6.28253 6.40718 6.43589 6.55138 6.55230 6.76011 6.79890 6.85706 6.92053 7.05977 7.18612 7.31735 7.55266 7.97355 8.03843 8.49465 9.18628 9.70768 10.16457 10.70701 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.012801 B = 0.009605 C = 0.007178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.876810 B = 2914.440623 C = 3899.663362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.364 6.364 3 C 0.048 3.952 4 C 0.115 3.885 5 N -0.440 5.440 6 C -0.324 4.324 7 H 0.086 0.914 8 C 0.039 3.961 9 N -0.868 5.868 10 Si 0.911 3.089 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.271 1.271 14 C 0.517 3.483 15 O -0.579 6.579 16 C -0.151 4.151 17 H 0.112 0.888 18 C -0.160 4.160 19 C -0.099 4.099 20 H 0.100 0.900 21 C -0.108 4.108 22 H 0.100 0.900 23 C -0.188 4.188 24 C -0.128 4.128 25 H 0.116 0.884 26 C -0.114 4.114 27 H 0.028 0.972 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.127 0.873 33 H 0.059 0.941 34 H 0.269 0.731 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.054 0.946 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 -3.717 -0.575 3.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C -0.030 4.030 4 C -0.009 4.009 5 N -0.159 5.159 6 C -0.453 4.453 7 H 0.104 0.896 8 C -0.165 4.165 9 N -0.506 5.506 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.196 1.196 14 C 0.306 3.694 15 O -0.462 6.462 16 C -0.172 4.172 17 H 0.130 0.870 18 C -0.198 4.198 19 C -0.118 4.118 20 H 0.118 0.882 21 C -0.127 4.127 22 H 0.118 0.882 23 C -0.225 4.225 24 C -0.146 4.146 25 H 0.134 0.866 26 C -0.171 4.171 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.144 0.856 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.751 -4.011 0.014 4.081 hybrid contribution -0.273 1.186 -0.924 1.528 sum -1.023 -2.825 -0.911 3.140 Atomic orbital electron populations 1.22611 0.83781 1.01485 0.98666 1.88201 1.17114 1.27924 1.95011 1.23148 0.97011 0.84320 0.98483 1.21607 0.89066 1.02590 0.87662 1.43158 1.57930 1.03608 1.11166 1.19428 1.40699 0.97824 0.87314 0.89622 1.25276 0.95093 0.98959 0.97212 1.69703 1.31181 1.24201 1.25531 0.86174 0.77779 0.80805 0.81359 1.20510 1.21045 1.19583 1.19145 0.80247 0.82907 0.87149 1.90515 1.53530 1.62308 1.39849 1.22260 1.01871 0.92803 1.00269 0.86984 1.22953 0.99846 0.94805 1.02157 1.21621 0.89819 1.03995 0.96384 0.88210 1.21626 0.94914 1.00411 0.95709 0.88219 1.23149 0.91830 1.04677 1.02872 1.22327 1.01218 0.95176 0.95868 0.86605 1.21267 1.02096 1.00408 0.93332 0.95320 0.90698 0.95124 0.93730 0.94708 0.85560 0.92290 0.92070 0.88150 0.89457 0.89787 0.89567 0.94083 0.92738 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.65 16 2 O -0.36 -8.04 9.31 -47.67 -0.44 -8.48 16 3 C 0.05 1.03 6.28 37.16 0.23 1.26 16 4 C 0.11 2.73 5.44 -4.04 -0.02 2.71 16 5 N -0.44 -10.84 2.53 -114.81 -0.29 -11.13 16 6 C -0.32 -8.05 8.67 -14.93 -0.13 -8.18 16 7 H 0.09 2.09 6.48 -52.49 -0.34 1.75 16 8 C 0.04 0.94 5.04 -17.47 -0.09 0.86 16 9 N -0.87 -21.87 11.10 55.50 0.62 -21.25 16 10 Si 0.91 19.19 29.60 -169.99 -5.03 14.16 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 14 C 0.52 12.47 5.27 -10.99 -0.06 12.41 16 15 O -0.58 -15.00 14.32 -6.89 -0.10 -15.10 16 16 C -0.15 -3.16 5.47 -91.78 -0.50 -3.66 16 17 H 0.11 2.32 6.46 -51.93 -0.34 1.98 16 18 C -0.16 -2.87 9.76 -26.73 -0.26 -3.13 16 19 C -0.10 -1.82 5.87 -90.62 -0.53 -2.36 16 20 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 21 C -0.11 -2.02 4.55 -90.62 -0.41 -2.43 16 22 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 23 C -0.19 -3.12 9.90 -26.74 -0.26 -3.38 16 24 C -0.13 -2.53 4.90 -90.62 -0.44 -2.97 16 25 H 0.12 2.72 8.06 -51.93 -0.42 2.30 16 26 C -0.11 -2.15 10.19 37.15 0.38 -1.77 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.13 3.14 5.19 -51.93 -0.27 2.87 16 33 H 0.06 1.47 7.49 -51.93 -0.39 1.08 16 34 H 0.27 6.47 8.32 -40.82 -0.34 6.13 16 35 H 0.10 1.93 7.70 -51.93 -0.40 1.53 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 1.24 8.05 -51.93 -0.42 0.83 16 38 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16 40 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 335.72 15.07 5.06 5.06 Total: -1.00 -27.79 335.72 -7.94 -35.73 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.77 Total: 10.00 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -0.99 Total: -9.00 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.33 Total: -32.38 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.54 Total: -23.58 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.79 -7.94 -35.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717215590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.526 kcal (2) G-P(sol) polarization free energy of solvation -27.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds