Wall clock time and date at job start Mon Mar 30 2020 05:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.50697 * 109.47288 * 240.00113 * 2 1 3 5 5 O 1.21274 * 120.00088 * 243.27452 * 4 2 1 6 6 N 1.34780 * 120.00023 * 63.27259 * 4 2 1 7 7 C 1.46492 * 120.00034 * 185.31309 * 6 4 2 8 8 C 1.53007 * 109.47414 * 175.62064 * 7 6 4 9 9 C 1.50701 * 115.55001 * 39.12988 * 8 7 6 10 10 H 1.07994 * 120.00171 * 266.80074 * 9 8 7 11 11 C 1.37877 * 119.99674 * 86.79083 * 9 8 7 12 12 N 1.31520 * 119.99985 * 178.39432 * 11 9 8 13 13 Si 1.86800 * 120.00187 * 358.40265 * 11 9 8 14 14 H 1.48499 * 109.47176 * 90.87121 * 13 11 9 15 15 H 1.48491 * 109.47277 * 210.87443 * 13 11 9 16 16 H 1.48498 * 109.46939 * 330.87439 * 13 11 9 17 17 C 1.53002 * 117.49684 * 253.43060 * 8 7 6 18 18 C 1.52994 * 117.50311 * 184.80689 * 8 7 6 19 19 C 1.52993 * 109.47246 * 119.99835 * 2 1 3 20 20 H 1.09002 * 109.87284 * 61.00904 * 19 2 1 21 21 C 1.54105 * 109.88173 * 300.00041 * 19 2 1 22 22 C 1.54807 * 104.30727 * 238.48031 * 21 19 2 23 23 C 1.55226 * 101.98905 * 339.25962 * 22 21 19 24 24 O 1.43746 * 109.88038 * 182.17312 * 19 2 1 25 25 H 1.08996 * 109.47592 * 65.42789 * 1 2 3 26 26 H 1.09001 * 109.46992 * 185.42623 * 1 2 3 27 27 H 1.08997 * 109.47411 * 305.42640 * 1 2 3 28 28 H 0.97009 * 119.99739 * 5.31485 * 6 4 2 29 29 H 1.09004 * 109.47286 * 295.61693 * 7 6 4 30 30 H 1.08998 * 109.47676 * 55.61951 * 7 6 4 31 31 H 0.96995 * 119.99779 * 180.02562 * 12 11 9 32 32 H 1.08999 * 117.50082 * 359.97438 * 17 8 7 33 33 H 1.08997 * 117.50085 * 145.01931 * 17 8 7 34 34 H 1.09000 * 117.50186 * 214.97783 * 18 8 7 35 35 H 1.09001 * 117.49949 * 359.97438 * 18 8 7 36 36 H 1.09001 * 110.48408 * 357.22588 * 21 19 2 37 37 H 1.09001 * 110.48480 * 119.73815 * 21 19 2 38 38 H 1.08995 * 110.90545 * 97.38361 * 22 21 19 39 39 H 1.08999 * 110.90612 * 220.98805 * 22 21 19 40 40 H 1.08995 * 110.51961 * 278.38987 * 23 22 21 41 41 H 1.08993 * 110.77648 * 155.49951 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.6798 -1.7299 -1.1202 6 7 1.7621 -0.2127 -2.4535 7 6 2.1488 -0.9623 -3.6512 8 6 1.6337 -0.2364 -4.8957 9 6 1.7259 1.2672 -4.8559 10 1 0.8850 1.8509 -4.5117 11 6 2.8840 1.8977 -5.2588 12 7 2.9535 3.2111 -5.2541 13 14 4.3542 0.8867 -5.8117 14 1 4.2803 0.6667 -7.2784 15 1 5.6066 1.6133 -5.4826 16 1 4.3443 -0.4239 -5.1135 17 6 0.4409 -0.8523 -5.6297 18 6 1.8385 -0.9212 -6.2484 19 6 2.0400 -0.7212 1.2492 20 1 1.6951 -1.7552 1.2469 21 6 1.5316 -0.0021 2.5138 22 6 2.8210 0.3893 3.2759 23 6 3.8624 -0.5909 2.6723 24 8 3.4765 -0.6821 1.2840 25 1 -0.3634 0.4273 -0.9345 26 1 -0.3633 -1.0231 0.0972 27 1 -0.3634 0.5957 0.8374 28 1 1.3115 0.6420 -2.5406 29 1 3.2353 -1.0373 -3.6979 30 1 1.7171 -1.9623 -3.6092 31 1 3.7681 3.6546 -5.5379 32 1 0.0233 -1.7748 -5.2263 33 1 -0.2775 -0.1699 -6.0840 34 1 2.0396 -0.2841 -7.1098 35 1 2.3405 -1.8887 -6.2519 36 1 0.9628 0.8878 2.2439 37 1 0.9218 -0.6753 3.1163 38 1 3.0957 1.4237 3.0698 39 1 2.7046 0.2252 4.3471 40 1 3.7936 -1.5659 3.1545 41 1 4.8710 -0.1884 2.7647 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720623356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:44 Heat of formation + Delta-G solvation = -68.935970 kcal Electronic energy + Delta-G solvation = -21135.675965 eV Core-core repulsion = 18015.982998 eV Total energy + Delta-G solvation = -3119.692968 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.95761 -38.52822 -36.95655 -33.88461 -33.12603 -32.16744 -31.83282 -28.03803 -26.61090 -25.38732 -24.12408 -22.26849 -21.67510 -20.70580 -19.51005 -18.99998 -17.04485 -16.50290 -16.01707 -15.71134 -15.40139 -15.03198 -14.62219 -14.24204 -13.77250 -13.65703 -13.23059 -12.87659 -12.79988 -12.52297 -12.28934 -12.21069 -11.80776 -11.65728 -11.40524 -11.16223 -11.09597 -11.02933 -10.65967 -10.64330 -10.49811 -10.15338 -9.65233 -9.51511 -9.23466 -9.02596 -8.68147 -8.57126 -8.04232 -6.19220 -4.24596 3.29027 3.31515 3.39575 3.46276 3.83491 3.98355 4.39602 4.49668 4.69405 4.86084 4.89732 4.98010 5.09861 5.20186 5.25474 5.33360 5.40897 5.60768 5.65015 5.67758 5.74466 5.75900 5.82526 5.90121 5.98301 6.03154 6.11043 6.16314 6.24528 6.34007 6.46598 6.59549 6.74874 6.95664 7.07667 7.09267 7.33585 7.68120 8.38151 8.41450 8.80238 9.00127 9.44896 10.91343 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.005276 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.097355 B = 5305.985203 C = 5612.829846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 H 0.101 0.899 4 C 0.511 3.489 5 O -0.550 6.550 6 N -0.700 5.700 7 C 0.153 3.847 8 C -0.015 4.015 9 C -0.494 4.494 10 H 0.079 0.921 11 C 0.084 3.916 12 N -0.893 5.893 13 Si 0.877 3.123 14 H -0.278 1.278 15 H -0.294 1.294 16 H -0.254 1.254 17 C -0.178 4.178 18 C -0.196 4.196 19 C 0.100 3.900 20 H 0.072 0.928 21 C -0.154 4.154 22 C -0.156 4.156 23 C 0.042 3.958 24 O -0.354 6.354 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.409 0.591 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.266 0.734 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.074 -5.287 13.992 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 H 0.119 0.881 4 C 0.296 3.704 5 O -0.429 6.429 6 N -0.352 5.352 7 C 0.029 3.971 8 C -0.016 4.016 9 C -0.531 4.531 10 H 0.097 0.903 11 C -0.119 4.119 12 N -0.529 5.529 13 Si 0.705 3.295 14 H -0.204 1.204 15 H -0.221 1.221 16 H -0.179 1.179 17 C -0.215 4.215 18 C -0.234 4.234 19 C 0.042 3.958 20 H 0.090 0.910 21 C -0.191 4.191 22 C -0.193 4.193 23 C -0.035 4.035 24 O -0.273 6.273 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.247 0.753 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.375 -5.856 13.818 15.382 hybrid contribution 0.590 0.064 -0.324 0.677 sum -2.785 -5.792 13.494 14.946 Atomic orbital electron populations 1.21772 0.92284 1.02674 1.03226 1.21484 0.97282 1.01450 0.93168 0.88094 1.20308 0.80121 0.85348 0.84657 1.90648 1.39567 1.25744 1.86898 1.45966 1.59854 1.24724 1.04613 1.21019 0.99186 0.92587 0.84301 1.19620 0.98169 0.95487 0.88333 1.20136 1.01186 0.86395 1.45406 0.90308 1.24949 0.98352 0.94590 0.94047 1.69883 1.28171 1.08006 1.46840 0.86894 0.81852 0.81426 0.79315 1.20429 1.22078 1.17878 1.22879 0.91305 1.01262 1.06098 1.22937 1.00300 1.01043 0.99098 1.22474 0.81849 0.98657 0.92863 0.90986 1.23083 0.98236 1.01452 0.96378 1.23176 0.95344 1.00742 1.00087 1.23569 0.98836 0.97980 0.83100 1.89077 1.19855 1.94887 1.23468 0.90979 0.92103 0.91521 0.75298 0.92328 0.93637 0.92436 0.90926 0.89504 0.89262 0.90821 0.89961 0.90669 0.90478 0.90499 0.92564 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.80 37.16 0.33 -1.32 16 2 C -0.11 -1.66 2.38 -91.78 -0.22 -1.88 16 3 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 4 C 0.51 9.97 6.96 -10.99 -0.08 9.89 16 5 O -0.55 -12.62 15.45 -9.65 -0.15 -12.77 16 6 N -0.70 -14.14 5.21 -60.30 -0.31 -14.46 16 7 C 0.15 3.34 5.56 -4.04 -0.02 3.32 16 8 C -0.01 -0.33 1.19 -155.66 -0.19 -0.52 16 9 C -0.49 -12.77 7.94 -34.44 -0.27 -13.04 16 10 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 11 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 12 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 13 Si 0.88 21.66 25.15 -169.99 -4.27 17.38 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 16 H -0.25 -6.14 5.30 56.52 0.30 -5.84 16 17 C -0.18 -3.49 9.88 -26.73 -0.26 -3.76 16 18 C -0.20 -4.09 7.65 -26.73 -0.20 -4.30 16 19 C 0.10 1.41 2.49 -26.16 -0.07 1.34 16 20 H 0.07 1.06 8.05 -51.93 -0.42 0.65 16 21 C -0.15 -1.54 6.08 -25.20 -0.15 -1.69 16 22 C -0.16 -1.47 7.17 -24.60 -0.18 -1.65 16 23 C 0.04 0.49 7.72 38.34 0.30 0.79 16 24 O -0.35 -5.91 10.34 -50.45 -0.52 -6.43 16 25 H 0.07 0.86 7.77 -51.93 -0.40 0.46 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.60 6.71 -51.93 -0.35 0.25 16 28 H 0.41 8.07 7.09 -40.82 -0.29 7.78 16 29 H 0.06 1.41 6.25 -51.93 -0.32 1.08 16 30 H 0.05 0.95 7.94 -51.93 -0.41 0.53 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.07 1.27 8.08 -51.93 -0.42 0.86 16 33 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 34 H 0.09 1.95 7.30 -51.93 -0.38 1.57 16 35 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.08 0.74 6.49 -51.93 -0.34 0.41 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 324.24 15.07 4.89 4.89 Total: -1.00 -31.56 324.24 -7.51 -39.08 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.80 Total: 8.13 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.11 Total: -10.60 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.46 Total: -39.67 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.67 Total: -19.20 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.27 Total: 17.38 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.56 -7.51 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720623356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.861 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds