Wall clock time and date at job start Mon Mar 30 2020 05:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46892 * 2 1 4 4 C 1.50697 * 109.47288 * 240.00113 * 2 1 3 5 5 O 1.21274 * 120.00088 * 243.27452 * 4 2 1 6 6 N 1.34780 * 120.00023 * 63.27259 * 4 2 1 7 7 C 1.46492 * 120.00034 * 185.31309 * 6 4 2 8 8 C 1.53007 * 109.47414 * 175.62064 * 7 6 4 9 9 C 1.50701 * 115.55001 * 39.12988 * 8 7 6 10 10 H 1.07994 * 120.00171 * 266.80074 * 9 8 7 11 11 C 1.37877 * 119.99674 * 86.79083 * 9 8 7 12 12 N 1.31520 * 119.99985 * 178.39432 * 11 9 8 13 13 Si 1.86800 * 120.00187 * 358.40265 * 11 9 8 14 14 H 1.48499 * 109.47176 * 90.87121 * 13 11 9 15 15 H 1.48491 * 109.47277 * 210.87443 * 13 11 9 16 16 H 1.48498 * 109.46939 * 330.87439 * 13 11 9 17 17 C 1.53002 * 117.49684 * 253.43060 * 8 7 6 18 18 C 1.52994 * 117.50311 * 184.80689 * 8 7 6 19 19 C 1.52993 * 109.47246 * 119.99835 * 2 1 3 20 20 H 1.09002 * 109.87284 * 61.00904 * 19 2 1 21 21 C 1.54105 * 109.88173 * 300.00041 * 19 2 1 22 22 C 1.54807 * 104.30727 * 238.48031 * 21 19 2 23 23 C 1.55226 * 101.98905 * 339.25962 * 22 21 19 24 24 O 1.43746 * 109.88038 * 182.17312 * 19 2 1 25 25 H 1.08996 * 109.47592 * 65.42789 * 1 2 3 26 26 H 1.09001 * 109.46992 * 185.42623 * 1 2 3 27 27 H 1.08997 * 109.47411 * 305.42640 * 1 2 3 28 28 H 0.97009 * 119.99739 * 5.31485 * 6 4 2 29 29 H 1.09004 * 109.47286 * 295.61693 * 7 6 4 30 30 H 1.08998 * 109.47676 * 55.61951 * 7 6 4 31 31 H 0.96995 * 119.99779 * 180.02562 * 12 11 9 32 32 H 1.08999 * 117.50082 * 359.97438 * 17 8 7 33 33 H 1.08997 * 117.50085 * 145.01931 * 17 8 7 34 34 H 1.09000 * 117.50186 * 214.97783 * 18 8 7 35 35 H 1.09001 * 117.49949 * 359.97438 * 18 8 7 36 36 H 1.09001 * 110.48408 * 357.22588 * 21 19 2 37 37 H 1.09001 * 110.48480 * 119.73815 * 21 19 2 38 38 H 1.08995 * 110.90545 * 97.38361 * 22 21 19 39 39 H 1.08999 * 110.90612 * 220.98805 * 22 21 19 40 40 H 1.08995 * 110.51961 * 278.38987 * 23 22 21 41 41 H 1.08993 * 110.77648 * 155.49951 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.6798 -1.7299 -1.1202 6 7 1.7621 -0.2127 -2.4535 7 6 2.1488 -0.9623 -3.6512 8 6 1.6337 -0.2364 -4.8957 9 6 1.7259 1.2672 -4.8559 10 1 0.8850 1.8509 -4.5117 11 6 2.8840 1.8977 -5.2588 12 7 2.9535 3.2111 -5.2541 13 14 4.3542 0.8867 -5.8117 14 1 4.2803 0.6667 -7.2784 15 1 5.6066 1.6133 -5.4826 16 1 4.3443 -0.4239 -5.1135 17 6 0.4409 -0.8523 -5.6297 18 6 1.8385 -0.9212 -6.2484 19 6 2.0400 -0.7212 1.2492 20 1 1.6951 -1.7552 1.2469 21 6 1.5316 -0.0021 2.5138 22 6 2.8210 0.3893 3.2759 23 6 3.8624 -0.5909 2.6723 24 8 3.4765 -0.6821 1.2840 25 1 -0.3634 0.4273 -0.9345 26 1 -0.3633 -1.0231 0.0972 27 1 -0.3634 0.5957 0.8374 28 1 1.3115 0.6420 -2.5406 29 1 3.2353 -1.0373 -3.6979 30 1 1.7171 -1.9623 -3.6092 31 1 3.7681 3.6546 -5.5379 32 1 0.0233 -1.7748 -5.2263 33 1 -0.2775 -0.1699 -6.0840 34 1 2.0396 -0.2841 -7.1098 35 1 2.3405 -1.8887 -6.2519 36 1 0.9628 0.8878 2.2439 37 1 0.9218 -0.6753 3.1163 38 1 3.0957 1.4237 3.0698 39 1 2.7046 0.2252 4.3471 40 1 3.7936 -1.5659 3.1545 41 1 4.8710 -0.1884 2.7647 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720623356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:44 Heat of formation + Delta-G solvation = -89.888746 kcal Electronic energy + Delta-G solvation = -21136.584546 eV Core-core repulsion = 18015.982998 eV Total energy + Delta-G solvation = -3120.601548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22223 -39.87518 -38.64578 -35.20634 -34.62387 -34.24547 -32.73902 -29.10410 -28.22236 -27.24237 -25.27444 -23.35434 -23.20045 -21.77894 -21.22168 -20.51480 -18.57469 -18.08886 -17.32689 -16.94750 -16.82152 -16.56348 -16.15724 -15.71396 -15.33464 -14.82085 -14.52948 -14.38387 -14.28688 -14.15613 -13.94242 -13.25210 -13.10542 -12.92137 -12.62598 -12.55853 -12.35506 -12.16718 -12.07863 -11.99838 -11.92270 -11.56369 -11.46093 -11.03172 -10.75464 -10.61485 -10.58610 -10.32850 -9.74948 -8.32161 -6.37681 1.30298 1.37582 1.47070 1.79226 2.34367 2.39941 2.97460 3.04851 3.20593 3.61907 3.74664 3.97077 4.01436 4.05559 4.13010 4.23243 4.35209 4.39712 4.41464 4.47857 4.58624 4.65163 4.79932 4.82811 4.85824 4.88203 4.91322 4.96576 5.03381 5.07571 5.17397 5.22757 5.26186 5.30827 5.48131 5.63787 5.74190 6.10390 6.28403 6.69574 6.83221 7.33692 7.42562 8.81430 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.005276 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.097355 B = 5305.985203 C = 5612.829846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 H 0.102 0.898 4 C 0.505 3.495 5 O -0.588 6.588 6 N -0.703 5.703 7 C 0.160 3.840 8 C -0.040 4.040 9 C -0.477 4.477 10 H 0.054 0.946 11 C 0.038 3.962 12 N -0.936 5.936 13 Si 0.920 3.080 14 H -0.267 1.267 15 H -0.304 1.304 16 H -0.247 1.247 17 C -0.152 4.152 18 C -0.196 4.196 19 C 0.094 3.906 20 H 0.058 0.942 21 C -0.145 4.145 22 C -0.148 4.148 23 C 0.031 3.969 24 O -0.401 6.401 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.411 0.589 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.265 0.735 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.351 -6.219 15.293 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 H 0.120 0.880 4 C 0.292 3.708 5 O -0.469 6.469 6 N -0.354 5.354 7 C 0.036 3.964 8 C -0.041 4.041 9 C -0.514 4.514 10 H 0.072 0.928 11 C -0.161 4.161 12 N -0.575 5.575 13 Si 0.747 3.253 14 H -0.192 1.192 15 H -0.232 1.232 16 H -0.171 1.171 17 C -0.189 4.189 18 C -0.233 4.233 19 C 0.036 3.964 20 H 0.076 0.924 21 C -0.183 4.183 22 C -0.185 4.185 23 C -0.046 4.046 24 O -0.321 6.321 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.248 0.752 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.674 -6.798 15.120 17.224 hybrid contribution 0.961 0.327 -0.704 1.235 sum -3.713 -6.470 14.415 16.231 Atomic orbital electron populations 1.21783 0.89516 1.03577 1.04407 1.21573 0.99465 1.00696 0.91135 0.87994 1.21201 0.79076 0.84963 0.85559 1.90619 1.41178 1.27603 1.87462 1.46011 1.59895 1.24696 1.04758 1.20848 0.97570 0.93371 0.84637 1.19512 1.01585 0.93519 0.89522 1.20263 0.99696 0.88336 1.43136 0.92832 1.25554 1.00620 0.95119 0.94856 1.69986 1.28799 1.09426 1.49303 0.86201 0.79076 0.80447 0.79610 1.19207 1.23162 1.17122 1.22922 0.90438 1.01797 1.03754 1.22987 1.01554 1.01467 0.97338 1.22590 0.81108 0.98418 0.94278 0.92371 1.23081 0.98714 1.01995 0.94485 1.23168 0.93985 0.99894 1.01480 1.23824 0.99949 0.99353 0.81429 1.89027 1.21455 1.95123 1.26473 0.91519 0.91764 0.88191 0.75153 0.94988 0.92415 0.92637 0.88056 0.89449 0.90324 0.88751 0.88547 0.88431 0.90566 0.87693 0.91705 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.80 71.98 0.63 -2.20 16 2 C -0.11 -3.08 2.38 -11.54 -0.03 -3.11 16 3 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 4 C 0.50 19.73 6.96 87.66 0.61 20.34 16 5 O -0.59 -27.33 15.45 11.54 0.18 -27.16 16 6 N -0.70 -28.33 5.21 -463.07 -2.41 -30.75 16 7 C 0.16 6.88 5.56 86.38 0.48 7.37 16 8 C -0.04 -1.75 1.19 -52.93 -0.06 -1.82 16 9 C -0.48 -24.75 7.94 25.60 0.20 -24.55 16 10 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 11 C 0.04 2.09 5.47 84.65 0.46 2.56 16 12 N -0.94 -55.69 13.96 21.45 0.30 -55.40 16 13 Si 0.92 44.75 25.15 68.60 1.73 46.48 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 15 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 16 H -0.25 -11.67 5.30 99.48 0.53 -11.14 16 17 C -0.15 -5.56 9.88 30.59 0.30 -5.25 16 18 C -0.20 -7.74 7.65 30.59 0.23 -7.51 16 19 C 0.09 2.55 2.49 30.97 0.08 2.63 16 20 H 0.06 1.69 8.05 -2.39 -0.02 1.67 16 21 C -0.15 -2.46 6.08 31.58 0.19 -2.27 16 22 C -0.15 -2.39 7.17 31.97 0.23 -2.16 16 23 C 0.03 0.69 7.72 72.75 0.56 1.25 16 24 O -0.40 -13.38 10.34 -134.43 -1.39 -14.77 16 25 H 0.07 1.47 7.77 -2.39 -0.02 1.46 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.10 1.44 6.71 -2.39 -0.02 1.42 16 28 H 0.41 16.26 7.09 -92.70 -0.66 15.61 16 29 H 0.03 1.53 6.25 -2.39 -0.01 1.52 16 30 H 0.06 2.32 7.94 -2.39 -0.02 2.30 16 31 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.10 3.16 8.08 -2.39 -0.02 3.14 16 33 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.08 3.29 7.30 -2.39 -0.02 3.27 16 35 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.10 1.37 6.49 -2.39 -0.02 1.35 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -69.67 324.24 2.47 -67.20 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.17 Total: 29.12 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 3.90 Total: -14.72 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -2.11 Total: -86.14 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -1.21 Total: -41.93 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.73 Total: 46.48 kcal Total: -69.67 2.47 -67.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720623356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.687 kcal (2) G-P(sol) polarization free energy of solvation -69.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds