Wall clock time and date at job start Mon Mar 30 2020 05:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47225 * 2 1 4 4 C 1.50700 * 109.47035 * 240.00369 * 2 1 3 5 5 O 1.21285 * 119.99951 * 265.86934 * 4 2 1 6 6 N 1.34771 * 120.00140 * 85.86479 * 4 2 1 7 7 C 1.47025 * 125.64890 * 354.89432 * 6 4 2 8 8 C 1.54324 * 107.27209 * 178.95841 * 7 6 4 9 9 C 1.55153 * 102.94321 * 337.81002 * 8 7 6 10 10 H 1.09005 * 111.00089 * 277.38549 * 9 8 7 11 11 C 1.50702 * 111.00742 * 153.57630 * 9 8 7 12 12 H 1.07995 * 120.00200 * 241.45187 * 11 9 8 13 13 C 1.37883 * 119.99735 * 61.45013 * 11 9 8 14 14 N 1.31508 * 120.00272 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99667 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46959 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.47293 * 60.00023 * 15 13 11 18 18 H 1.48500 * 109.47452 * 299.99994 * 15 13 11 19 19 C 1.47431 * 125.64845 * 174.91374 * 6 4 2 20 20 C 1.53004 * 109.47318 * 120.00660 * 2 1 3 21 21 H 1.08998 * 109.87304 * 179.29822 * 20 2 1 22 22 C 1.54104 * 109.87286 * 300.30605 * 20 2 1 23 23 C 1.54814 * 104.18827 * 121.45655 * 22 20 2 24 24 C 1.54996 * 102.09270 * 20.87443 * 23 22 20 25 25 O 1.43744 * 109.87805 * 58.28679 * 20 2 1 26 26 H 1.09007 * 109.47352 * 185.92437 * 1 2 3 27 27 H 1.09004 * 109.46959 * 305.92369 * 1 2 3 28 28 H 1.09004 * 109.47252 * 65.92932 * 1 2 3 29 29 H 1.08994 * 109.88060 * 59.54194 * 7 6 4 30 30 H 1.09000 * 110.00975 * 298.44947 * 7 6 4 31 31 H 1.08999 * 110.72247 * 219.44295 * 8 7 6 32 32 H 1.08998 * 110.87133 * 96.23784 * 8 7 6 33 33 H 0.97008 * 119.99808 * 359.97438 * 14 13 11 34 34 H 1.09007 * 110.36414 * 85.27459 * 19 6 4 35 35 H 1.08989 * 110.36845 * 322.95136 * 19 6 4 36 36 H 1.09000 * 110.48490 * 240.12536 * 22 20 2 37 37 H 1.08993 * 110.49108 * 2.64498 * 22 20 2 38 38 H 1.08992 * 110.90669 * 139.07505 * 23 22 20 39 39 H 1.08999 * 110.90145 * 262.67724 * 23 22 20 40 40 H 1.08999 * 110.62092 * 81.47912 * 24 23 22 41 41 H 1.09000 * 110.62166 * 204.47890 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.3058 -1.8909 -1.1801 6 7 2.1776 -0.0338 -2.3870 7 6 1.7860 1.3646 -2.6168 8 6 2.1652 1.7135 -4.0714 9 6 3.2631 0.6691 -4.4045 10 1 4.2352 0.9916 -4.0313 11 6 3.3193 0.3980 -5.8858 12 1 3.1235 -0.5956 -6.2608 13 6 3.6207 1.4187 -6.7625 14 7 3.8597 2.6286 -6.3059 15 14 3.6897 1.0829 -8.5987 16 1 4.0310 2.3361 -9.3186 17 1 2.3674 0.5909 -9.0620 18 1 4.7250 0.0549 -8.8754 19 6 2.7551 -0.5736 -3.6315 20 6 2.0400 -0.7214 1.2492 21 1 3.1299 -0.7361 1.2495 22 6 1.5252 -0.0068 2.5137 23 6 0.7285 -1.0986 3.2687 24 6 1.3135 -2.4018 2.6673 25 8 1.5330 -2.0661 1.2783 26 1 -0.3634 -1.0222 0.1061 27 1 -0.3633 0.6030 0.8322 28 1 -0.3634 0.4192 -0.9383 29 1 2.3213 2.0174 -1.9274 30 1 0.7111 1.4788 -2.4762 31 1 2.5643 2.7259 -4.1337 32 1 1.3082 1.5969 -4.7348 33 1 3.8235 2.8031 -5.3523 34 1 1.9913 -1.0938 -4.2097 35 1 3.5836 -1.2446 -3.4054 36 1 2.3601 0.3442 3.1202 37 1 0.8747 0.8250 2.2438 38 1 0.9170 -1.0462 4.3410 39 1 -0.3379 -1.0174 3.0582 40 1 2.2556 -2.6589 3.1514 41 1 0.5991 -3.2202 2.7565 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720623599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:36 Heat of formation + Delta-G solvation = -92.467778 kcal Electronic energy + Delta-G solvation = -21174.914978 eV Core-core repulsion = 18054.201595 eV Total energy + Delta-G solvation = -3120.713383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.22369 -38.87430 -36.79532 -33.82497 -33.15946 -31.97199 -30.00316 -28.57342 -28.02643 -25.26009 -24.14638 -22.78451 -21.90329 -20.67587 -19.87521 -18.60523 -17.18520 -16.63692 -16.40306 -16.02685 -15.29506 -15.20717 -14.52283 -14.11947 -13.77368 -13.68865 -13.34308 -12.95816 -12.59035 -12.28377 -12.04606 -12.01536 -11.85674 -11.74336 -11.49946 -11.32047 -11.21208 -11.09501 -10.94482 -10.74246 -10.70117 -10.13543 -9.90259 -9.68349 -9.60898 -9.17634 -8.60716 -8.42303 -8.00561 -6.40363 -4.14305 3.08993 3.42387 3.43452 3.50738 3.62430 3.85671 4.36203 4.49141 4.57429 4.76561 4.84988 4.88145 5.01955 5.16548 5.29272 5.29666 5.45100 5.50076 5.50807 5.54292 5.61304 5.67056 5.78220 5.79599 5.86032 5.87325 5.96043 6.12439 6.23459 6.25155 6.52946 6.69642 6.81779 6.91038 6.97433 7.08807 7.49406 8.10170 8.14075 8.36627 8.69715 8.80255 9.57334 10.97025 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.050845 B = 0.003937 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.556509 B = 7111.072549 C = 7376.541067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.097 0.903 4 C 0.524 3.476 5 O -0.532 6.532 6 N -0.617 5.617 7 C 0.099 3.901 8 C -0.126 4.126 9 C 0.029 3.971 10 H 0.030 0.970 11 C -0.594 4.594 12 H 0.053 0.947 13 C 0.023 3.977 14 N -0.911 5.911 15 Si 1.068 2.932 16 H -0.283 1.283 17 H -0.288 1.288 18 H -0.287 1.287 19 C 0.118 3.882 20 C 0.096 3.904 21 H 0.067 0.933 22 C -0.153 4.153 23 C -0.153 4.153 24 C 0.039 3.961 25 O -0.342 6.342 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.272 0.728 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.874 -1.716 17.526 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.115 0.885 4 C 0.311 3.689 5 O -0.408 6.408 6 N -0.351 5.351 7 C -0.024 4.024 8 C -0.165 4.165 9 C 0.010 3.990 10 H 0.048 0.952 11 C -0.633 4.633 12 H 0.071 0.929 13 C -0.181 4.181 14 N -0.547 5.547 15 Si 0.897 3.103 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.214 1.214 19 C -0.004 4.004 20 C 0.037 3.963 21 H 0.085 0.915 22 C -0.191 4.191 23 C -0.191 4.191 24 C -0.038 4.038 25 O -0.260 6.260 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.491 -1.811 15.961 17.325 hybrid contribution -0.246 -0.423 1.713 1.782 sum -6.737 -2.234 17.674 19.046 Atomic orbital electron populations 1.21672 0.92442 1.03347 1.02027 1.21507 0.98500 0.99891 0.92918 0.88495 1.20046 0.78528 0.86999 0.83309 1.90709 1.50535 1.15046 1.84522 1.48775 1.61152 1.13490 1.11658 1.22157 0.98433 0.82167 0.99654 1.22873 1.01049 1.01084 0.91467 1.20003 0.93341 0.89739 0.95947 0.95239 1.21813 1.52992 0.98187 0.90276 0.92864 1.25795 0.93225 0.92897 1.06218 1.70833 1.45344 1.21296 1.17241 0.83542 0.76609 0.75683 0.74512 1.20788 1.21401 1.21383 1.22407 0.96907 0.98233 0.82833 1.22460 0.97727 0.83135 0.92987 0.91472 1.23061 1.00573 0.99205 0.96256 1.23116 1.00696 0.95152 1.00144 1.23591 0.99612 0.97183 0.83409 1.89208 1.85318 1.28496 1.22970 0.91158 0.91821 0.92150 0.92689 0.92673 0.90925 0.91361 0.91629 0.92225 0.92160 0.90634 0.89964 0.90496 0.90551 0.92525 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.73 37.16 0.32 -1.35 16 2 C -0.11 -1.49 1.99 -91.77 -0.18 -1.67 16 3 H 0.10 1.18 7.24 -51.93 -0.38 0.80 16 4 C 0.52 9.97 6.93 -10.99 -0.08 9.90 16 5 O -0.53 -12.09 15.47 -14.90 -0.23 -12.32 16 6 N -0.62 -12.14 3.33 -170.52 -0.57 -12.70 16 7 C 0.10 1.73 6.31 -3.06 -0.02 1.71 16 8 C -0.13 -2.69 5.58 -24.90 -0.14 -2.83 16 9 C 0.03 0.70 2.58 -89.62 -0.23 0.47 16 10 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 11 C -0.59 -16.17 8.55 -34.44 -0.29 -16.46 16 12 H 0.05 1.45 7.79 -52.49 -0.41 1.05 16 13 C 0.02 0.64 5.34 -17.82 -0.10 0.54 16 14 N -0.91 -26.09 13.43 55.43 0.74 -25.35 16 15 Si 1.07 24.48 29.90 -169.99 -5.08 19.40 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.12 2.65 6.33 -2.53 -0.02 2.63 16 20 C 0.10 1.26 2.93 -26.15 -0.08 1.18 16 21 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 22 C -0.15 -1.39 6.20 -25.20 -0.16 -1.55 16 23 C -0.15 -1.26 7.16 -24.72 -0.18 -1.44 16 24 C 0.04 0.41 7.72 38.21 0.29 0.71 16 25 O -0.34 -5.21 8.95 -55.68 -0.50 -5.71 16 26 H 0.07 0.96 7.48 -51.93 -0.39 0.57 16 27 H 0.06 0.60 6.59 -51.93 -0.34 0.25 16 28 H 0.06 0.75 7.22 -51.93 -0.37 0.37 16 29 H 0.05 0.85 7.68 -51.93 -0.40 0.45 16 30 H 0.05 0.85 7.22 -51.93 -0.37 0.47 16 31 H 0.07 1.58 6.46 -51.93 -0.34 1.24 16 32 H 0.07 1.52 8.03 -51.93 -0.42 1.11 16 33 H 0.27 7.58 5.33 -40.82 -0.22 7.36 16 34 H 0.06 1.38 8.03 -51.93 -0.42 0.96 16 35 H 0.06 1.40 8.09 -51.94 -0.42 0.98 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.66 6.24 -51.93 -0.32 0.34 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 319.07 15.07 4.81 4.81 Total: -1.00 -32.03 319.07 -8.22 -40.25 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.55 Total: -0.22 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.84 Total: -8.16 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.18 Total: -38.05 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.73 Total: -18.03 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.08 Total: 19.40 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.03 -8.22 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720623599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.217 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds