Wall clock time and date at job start Mon Mar 30 2020 05:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47225 * 2 1 4 4 C 1.50700 * 109.47035 * 240.00369 * 2 1 3 5 5 O 1.21285 * 119.99951 * 265.86934 * 4 2 1 6 6 N 1.34771 * 120.00140 * 85.86479 * 4 2 1 7 7 C 1.47025 * 125.64890 * 354.89432 * 6 4 2 8 8 C 1.54324 * 107.27209 * 178.95841 * 7 6 4 9 9 C 1.55153 * 102.94321 * 337.81002 * 8 7 6 10 10 H 1.09005 * 111.00089 * 277.38549 * 9 8 7 11 11 C 1.50702 * 111.00742 * 153.57630 * 9 8 7 12 12 H 1.07995 * 120.00200 * 241.45187 * 11 9 8 13 13 C 1.37883 * 119.99735 * 61.45013 * 11 9 8 14 14 N 1.31508 * 120.00272 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99667 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46959 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.47293 * 60.00023 * 15 13 11 18 18 H 1.48500 * 109.47452 * 299.99994 * 15 13 11 19 19 C 1.47431 * 125.64845 * 174.91374 * 6 4 2 20 20 C 1.53004 * 109.47318 * 120.00660 * 2 1 3 21 21 H 1.08998 * 109.87304 * 179.29822 * 20 2 1 22 22 C 1.54104 * 109.87286 * 300.30605 * 20 2 1 23 23 C 1.54814 * 104.18827 * 121.45655 * 22 20 2 24 24 C 1.54996 * 102.09270 * 20.87443 * 23 22 20 25 25 O 1.43744 * 109.87805 * 58.28679 * 20 2 1 26 26 H 1.09007 * 109.47352 * 185.92437 * 1 2 3 27 27 H 1.09004 * 109.46959 * 305.92369 * 1 2 3 28 28 H 1.09004 * 109.47252 * 65.92932 * 1 2 3 29 29 H 1.08994 * 109.88060 * 59.54194 * 7 6 4 30 30 H 1.09000 * 110.00975 * 298.44947 * 7 6 4 31 31 H 1.08999 * 110.72247 * 219.44295 * 8 7 6 32 32 H 1.08998 * 110.87133 * 96.23784 * 8 7 6 33 33 H 0.97008 * 119.99808 * 359.97438 * 14 13 11 34 34 H 1.09007 * 110.36414 * 85.27459 * 19 6 4 35 35 H 1.08989 * 110.36845 * 322.95136 * 19 6 4 36 36 H 1.09000 * 110.48490 * 240.12536 * 22 20 2 37 37 H 1.08993 * 110.49108 * 2.64498 * 22 20 2 38 38 H 1.08992 * 110.90669 * 139.07505 * 23 22 20 39 39 H 1.08999 * 110.90145 * 262.67724 * 23 22 20 40 40 H 1.08999 * 110.62092 * 81.47912 * 24 23 22 41 41 H 1.09000 * 110.62166 * 204.47890 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.3058 -1.8909 -1.1801 6 7 2.1776 -0.0338 -2.3870 7 6 1.7860 1.3646 -2.6168 8 6 2.1652 1.7135 -4.0714 9 6 3.2631 0.6691 -4.4045 10 1 4.2352 0.9916 -4.0313 11 6 3.3193 0.3980 -5.8858 12 1 3.1235 -0.5956 -6.2608 13 6 3.6207 1.4187 -6.7625 14 7 3.8597 2.6286 -6.3059 15 14 3.6897 1.0829 -8.5987 16 1 4.0310 2.3361 -9.3186 17 1 2.3674 0.5909 -9.0620 18 1 4.7250 0.0549 -8.8754 19 6 2.7551 -0.5736 -3.6315 20 6 2.0400 -0.7214 1.2492 21 1 3.1299 -0.7361 1.2495 22 6 1.5252 -0.0068 2.5137 23 6 0.7285 -1.0986 3.2687 24 6 1.3135 -2.4018 2.6673 25 8 1.5330 -2.0661 1.2783 26 1 -0.3634 -1.0222 0.1061 27 1 -0.3633 0.6030 0.8322 28 1 -0.3634 0.4192 -0.9383 29 1 2.3213 2.0174 -1.9274 30 1 0.7111 1.4788 -2.4762 31 1 2.5643 2.7259 -4.1337 32 1 1.3082 1.5969 -4.7348 33 1 3.8235 2.8031 -5.3523 34 1 1.9913 -1.0938 -4.2097 35 1 3.5836 -1.2446 -3.4054 36 1 2.3601 0.3442 3.1202 37 1 0.8747 0.8250 2.2438 38 1 0.9170 -1.0462 4.3410 39 1 -0.3379 -1.0174 3.0582 40 1 2.2556 -2.6589 3.1514 41 1 0.5991 -3.2202 2.7565 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720623599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:35 Heat of formation + Delta-G solvation = -111.753630 kcal Electronic energy + Delta-G solvation = -21175.751276 eV Core-core repulsion = 18054.201595 eV Total energy + Delta-G solvation = -3121.549681 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.48040 -40.12916 -38.46034 -35.37349 -34.70566 -32.79120 -31.75968 -30.23510 -28.97660 -26.83564 -25.68395 -24.19695 -22.82533 -21.96342 -21.49017 -20.01392 -19.03769 -18.14419 -17.46281 -17.23875 -16.61671 -16.30106 -15.92812 -15.62097 -15.51613 -14.61568 -14.55767 -14.34311 -14.21559 -13.82352 -13.74886 -13.40081 -13.00206 -12.91900 -12.72508 -12.56282 -12.47673 -12.42136 -12.12453 -11.94523 -11.93071 -11.73108 -11.57148 -11.45619 -10.76114 -10.58996 -10.57084 -10.49948 -9.62985 -8.59421 -6.34332 1.56178 1.62172 1.62412 1.82363 2.01620 2.57952 2.96918 3.18413 3.49920 3.59089 3.79998 3.88394 3.96976 3.99403 4.10581 4.14717 4.21644 4.33387 4.35390 4.42917 4.57642 4.63332 4.65212 4.76300 4.84328 4.86330 4.89739 4.90840 4.97553 5.08032 5.14331 5.22253 5.24867 5.27942 5.30475 5.54076 6.03895 6.08545 6.17982 6.58357 6.66840 7.17746 7.43928 8.79679 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.050845 B = 0.003937 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.556509 B = 7111.072549 C = 7376.541067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 H 0.124 0.876 4 C 0.517 3.483 5 O -0.577 6.577 6 N -0.621 5.621 7 C 0.107 3.893 8 C -0.116 4.116 9 C 0.021 3.979 10 H 0.007 0.993 11 C -0.614 4.614 12 H 0.043 0.957 13 C -0.019 4.019 14 N -0.930 5.930 15 Si 1.112 2.888 16 H -0.281 1.281 17 H -0.272 1.272 18 H -0.277 1.277 19 C 0.127 3.873 20 C 0.087 3.913 21 H 0.048 0.952 22 C -0.144 4.144 23 C -0.143 4.143 24 C 0.028 3.972 25 O -0.383 6.383 26 H 0.050 0.950 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.267 0.733 34 H 0.047 0.953 35 H 0.042 0.958 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.339 -0.343 19.298 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.120 4.120 3 H 0.142 0.858 4 C 0.307 3.693 5 O -0.456 6.456 6 N -0.354 5.354 7 C -0.015 4.015 8 C -0.155 4.155 9 C 0.002 3.998 10 H 0.025 0.975 11 C -0.652 4.652 12 H 0.061 0.939 13 C -0.219 4.219 14 N -0.568 5.568 15 Si 0.934 3.066 16 H -0.207 1.207 17 H -0.198 1.198 18 H -0.203 1.203 19 C 0.004 3.996 20 C 0.029 3.971 21 H 0.066 0.934 22 C -0.181 4.181 23 C -0.181 4.181 24 C -0.049 4.049 25 O -0.303 6.303 26 H 0.069 0.931 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.971 -0.426 17.769 19.479 hybrid contribution 0.259 -0.936 1.185 1.532 sum -7.712 -1.362 18.954 20.508 Atomic orbital electron populations 1.21669 0.90644 1.02927 1.03599 1.21622 0.99756 1.00444 0.90177 0.85836 1.21135 0.77302 0.86734 0.84160 1.90683 1.52379 1.17342 1.85223 1.48869 1.61141 1.14392 1.11006 1.22212 1.00820 0.81086 0.97348 1.22643 0.99126 0.99674 0.94045 1.19919 0.93408 0.91672 0.94776 0.97504 1.22128 1.53082 0.97862 0.92107 0.93898 1.27068 0.92389 0.92424 1.10016 1.70920 1.46736 1.21991 1.17129 0.82978 0.77610 0.75832 0.70169 1.20669 1.19766 1.20251 1.22044 0.96069 0.97210 0.84286 1.22583 0.96837 0.83137 0.94563 0.93432 1.23051 1.01478 0.99384 0.94227 1.23100 1.00744 0.93007 1.01243 1.23829 1.00250 0.98967 0.81817 1.89173 1.85497 1.29802 1.25787 0.93128 0.88018 0.92198 0.89663 0.89397 0.91417 0.92698 0.92195 0.93439 0.93954 0.89084 0.88074 0.88093 0.89855 0.92291 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.73 71.98 0.63 -2.14 16 2 C -0.10 -2.53 1.99 -11.54 -0.02 -2.55 16 3 H 0.12 2.49 7.24 -2.39 -0.02 2.47 16 4 C 0.52 19.50 6.93 87.66 0.61 20.11 16 5 O -0.58 -27.00 15.47 16.51 0.26 -26.75 16 6 N -0.62 -24.16 3.33 -811.79 -2.70 -26.86 16 7 C 0.11 3.50 6.31 86.73 0.55 4.05 16 8 C -0.12 -4.92 5.58 31.78 0.18 -4.75 16 9 C 0.02 1.07 2.58 -10.15 -0.03 1.05 16 10 H 0.01 0.37 8.10 -2.38 -0.02 0.35 16 11 C -0.61 -34.21 8.55 25.60 0.22 -33.99 16 12 H 0.04 2.41 7.79 -2.91 -0.02 2.39 16 13 C -0.02 -1.06 5.34 84.66 0.45 -0.61 16 14 N -0.93 -53.75 13.43 21.45 0.29 -53.46 16 15 Si 1.11 49.28 29.90 68.60 2.05 51.33 16 16 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 18 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 19 C 0.13 5.90 6.33 86.85 0.55 6.45 16 20 C 0.09 2.16 2.93 30.97 0.09 2.25 16 21 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 22 C -0.14 -2.07 6.20 31.59 0.20 -1.88 16 23 C -0.14 -1.86 7.16 31.90 0.23 -1.64 16 24 C 0.03 0.55 7.72 72.67 0.56 1.11 16 25 O -0.38 -11.57 8.95 -129.43 -1.16 -12.73 16 26 H 0.05 1.29 7.48 -2.38 -0.02 1.27 16 27 H 0.10 1.39 6.59 -2.38 -0.02 1.37 16 28 H 0.06 1.27 7.22 -2.38 -0.02 1.26 16 29 H 0.09 2.33 7.68 -2.39 -0.02 2.31 16 30 H 0.09 2.37 7.22 -2.39 -0.02 2.35 16 31 H 0.07 2.92 6.46 -2.39 -0.02 2.91 16 32 H 0.05 2.44 8.03 -2.39 -0.02 2.42 16 33 H 0.27 15.11 5.33 -92.70 -0.49 14.62 16 34 H 0.05 2.29 8.03 -2.38 -0.02 2.27 16 35 H 0.04 2.07 8.09 -2.39 -0.02 2.05 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.09 6.24 -2.39 -0.01 1.08 16 38 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -72.52 319.07 4.22 -68.30 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.28 Total: 12.71 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 4.21 Total: -12.55 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -2.41 Total: -80.32 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -0.90 Total: -39.47 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 2.05 Total: 51.33 kcal Total: -72.52 4.22 -68.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720623599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.457 kcal (2) G-P(sol) polarization free energy of solvation -72.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds