Wall clock time and date at job start Mon Mar 30 2020 05:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47143 * 2 1 4 4 C 1.50702 * 109.47410 * 239.99659 * 2 1 3 5 5 H 1.07997 * 120.00590 * 240.00148 * 4 2 1 6 6 C 1.37887 * 119.99595 * 60.00125 * 4 2 1 7 7 N 1.31513 * 120.00014 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99660 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47729 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47188 * 120.00068 * 8 6 4 11 11 H 1.48509 * 109.47199 * 239.99656 * 8 6 4 12 12 O 1.45198 * 109.47402 * 119.99876 * 2 1 3 13 13 C 1.34229 * 117.00131 * 270.00301 * 12 2 1 14 14 O 1.20822 * 119.99894 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99937 * 179.97438 * 13 12 2 16 16 C 1.53119 * 109.51728 * 179.97438 * 15 13 12 17 17 C 1.53044 * 109.27589 * 182.37636 * 16 15 13 18 18 N 1.46847 * 109.51335 * 59.18419 * 17 16 15 19 19 C 1.46899 * 110.99862 * 174.15436 * 18 17 16 20 20 C 1.53001 * 117.49864 * 243.62320 * 19 18 17 21 21 C 1.53002 * 60.00217 * 252.51100 * 20 19 18 22 22 C 1.46847 * 111.20163 * 298.24410 * 18 17 16 23 23 C 1.53041 * 109.51486 * 61.75514 * 22 18 17 24 24 H 1.08997 * 109.46924 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47023 * 300.00057 * 1 2 3 26 26 H 1.08995 * 109.46955 * 60.00280 * 1 2 3 27 27 H 0.96998 * 119.99700 * 180.02562 * 7 6 4 28 28 H 1.08993 * 109.52260 * 300.12155 * 15 13 12 29 29 H 1.09000 * 109.50507 * 62.44301 * 16 15 13 30 30 H 1.08999 * 109.54263 * 302.33234 * 16 15 13 31 31 H 1.09002 * 109.46396 * 179.19729 * 17 16 15 32 32 H 1.08994 * 109.46485 * 299.17654 * 17 16 15 33 33 H 1.08995 * 115.55008 * 29.33554 * 19 18 17 34 34 H 1.09003 * 117.50041 * 0.02562 * 20 19 18 35 35 H 1.09004 * 117.49810 * 145.02569 * 20 19 18 36 36 H 1.08996 * 117.50295 * 252.51188 * 21 20 19 37 37 H 1.09001 * 117.49985 * 107.48805 * 21 20 19 38 38 H 1.09005 * 109.46836 * 301.74653 * 22 18 17 39 39 H 1.08995 * 109.45748 * 181.76188 * 22 18 17 40 40 H 1.08996 * 109.50341 * 180.87808 * 23 22 18 41 41 H 1.09004 * 109.53393 * 60.77542 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2871 -3.6038 10 1 1.1662 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8165 12 8 2.0140 -0.6844 1.1855 13 6 2.2172 0.0640 2.2811 14 8 1.9982 1.2519 2.2503 15 6 2.7183 -0.5772 3.5495 16 6 2.8641 0.4890 4.6387 17 6 3.4293 -0.1571 5.9058 18 7 4.7346 -0.7604 5.6083 19 6 5.3704 -1.2690 6.8311 20 6 6.6867 -0.6210 7.2649 21 6 6.6867 -2.0337 6.6774 22 6 4.6124 -1.8201 4.5991 23 6 4.0825 -1.2236 3.2931 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7090 1.1613 -3.4845 28 1 2.0105 -1.3386 3.8770 29 1 1.8882 0.9232 4.8560 30 1 3.5420 1.2706 4.2955 31 1 3.5477 0.6022 6.6788 32 1 2.7441 -0.9287 6.2566 33 1 4.6873 -1.5955 7.6152 34 1 7.0808 0.1830 6.6433 35 1 6.8698 -0.5209 8.3348 36 1 6.8697 -2.8630 7.3606 37 1 7.0809 -2.1594 5.6690 38 1 3.9214 -2.5838 4.9562 39 1 5.5901 -2.2685 4.4232 40 1 3.9770 -2.0130 2.5490 41 1 4.7796 -0.4696 2.9276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805881859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:26 Heat of formation + Delta-G solvation = -88.561997 kcal Electronic energy + Delta-G solvation = -20714.948464 eV Core-core repulsion = 17594.404448 eV Total energy + Delta-G solvation = -3120.544016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.59667 -40.01556 -37.81700 -36.93264 -35.34253 -33.13653 -31.87278 -31.56533 -27.49552 -26.72241 -24.38625 -23.71750 -22.84821 -22.03150 -21.28065 -20.63506 -18.90569 -18.41564 -17.75822 -17.25978 -16.76856 -16.34044 -15.97051 -15.57814 -15.04857 -14.90969 -14.69176 -14.53642 -13.95383 -13.84023 -13.50373 -13.26560 -13.15771 -13.03808 -12.83126 -12.52547 -12.40365 -12.32709 -12.19284 -12.14510 -11.75399 -11.61667 -11.58275 -11.29597 -11.12678 -11.01330 -10.96113 -10.61319 -9.20062 -8.30076 -6.47087 1.32019 1.41413 1.42198 1.56189 2.01136 2.41005 2.76293 2.96536 3.00620 3.57992 3.73506 3.83329 4.04794 4.11029 4.20403 4.25478 4.29319 4.33179 4.40627 4.51580 4.63868 4.72904 4.75461 4.79871 4.81477 4.83384 4.90263 4.93324 5.04695 5.14097 5.14923 5.19094 5.29737 5.37563 5.47660 5.61455 5.90946 6.08269 6.10181 6.23354 6.58817 6.96390 7.25212 8.78069 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032054 B = 0.003932 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.307215 B = 7119.040069 C = 7710.151126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.216 3.784 3 H 0.004 0.996 4 C -0.547 4.547 5 H 0.068 0.932 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.262 1.262 10 H -0.271 1.271 11 H -0.276 1.276 12 O -0.361 6.361 13 C 0.449 3.551 14 O -0.555 6.555 15 C -0.073 4.073 16 C -0.096 4.096 17 C 0.071 3.929 18 N -0.530 5.530 19 C -0.003 4.003 20 C -0.165 4.165 21 C -0.173 4.173 22 C 0.068 3.932 23 C -0.104 4.104 24 H 0.047 0.953 25 H 0.022 0.978 26 H 0.080 0.920 27 H 0.271 0.729 28 H 0.123 0.877 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.058 -7.369 18.994 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.163 3.837 3 H 0.021 0.979 4 C -0.584 4.584 5 H 0.087 0.913 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.186 1.186 10 H -0.196 1.196 11 H -0.202 1.202 12 O -0.277 6.277 13 C 0.294 3.706 14 O -0.446 6.446 15 C -0.092 4.092 16 C -0.133 4.133 17 C -0.056 4.056 18 N -0.255 5.255 19 C -0.111 4.111 20 C -0.203 4.203 21 C -0.210 4.210 22 C -0.059 4.059 23 C -0.142 4.142 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.141 0.859 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.184 -6.546 18.606 21.354 hybrid contribution -0.627 -0.180 -0.892 1.105 sum 7.557 -6.726 17.714 20.399 Atomic orbital electron populations 1.21979 0.96783 1.00442 1.00770 1.20331 0.92017 0.91966 0.79421 0.97851 1.21335 1.33334 1.13862 0.89913 0.91345 1.25872 0.94713 0.95677 1.02258 1.70030 1.36694 1.23731 1.25177 0.85109 0.78365 0.78424 0.77353 1.18578 1.19593 1.20157 1.86473 1.76021 1.43735 1.21491 1.24559 0.73502 0.85761 0.86788 1.90566 1.50198 1.18643 1.85236 1.21235 0.99846 0.99702 0.88420 1.21450 1.01729 0.96568 0.93604 1.22014 0.88728 0.98858 0.96035 1.61666 1.22910 1.31560 1.09379 1.22500 0.90521 1.04520 0.93578 1.23109 0.99532 0.96135 1.01522 1.23159 0.99122 0.95779 1.02942 1.22034 1.01669 0.92174 0.90037 1.21550 0.93233 1.00568 0.98842 0.93402 0.95873 0.90095 0.91991 0.85946 0.90666 0.92385 0.89056 0.92987 0.87882 0.89568 0.87290 0.87021 0.88893 0.93099 0.89090 0.89988 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.50 9.33 71.98 0.67 -6.83 16 2 C 0.22 12.19 2.56 29.85 0.08 12.27 16 3 H 0.00 0.23 7.16 -2.38 -0.02 0.22 16 4 C -0.55 -31.56 8.90 25.60 0.23 -31.33 16 5 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 6 C 0.01 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -53.55 11.32 21.45 0.24 -53.31 16 8 Si 0.98 43.24 29.54 68.60 2.03 45.26 16 9 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 12 O -0.36 -17.78 9.80 -51.41 -0.50 -18.28 16 13 C 0.45 19.47 7.23 71.24 0.52 19.98 16 14 O -0.55 -27.75 15.20 21.98 0.33 -27.42 16 15 C -0.07 -2.20 2.69 -11.46 -0.03 -2.23 16 16 C -0.10 -2.56 4.68 30.65 0.14 -2.42 16 17 C 0.07 1.41 5.40 86.33 0.47 1.87 16 18 N -0.53 -10.80 4.81 -871.09 -4.19 -14.99 16 19 C 0.00 -0.05 5.42 44.92 0.24 0.20 16 20 C -0.17 -2.40 10.46 30.60 0.32 -2.08 16 21 C -0.17 -2.34 9.68 30.60 0.30 -2.04 16 22 C 0.07 1.38 5.29 86.33 0.46 1.84 16 23 C -0.10 -2.82 5.31 30.65 0.16 -2.65 16 24 H 0.05 2.35 8.14 -2.39 -0.02 2.34 16 25 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 4.57 6.07 -2.39 -0.01 4.55 16 27 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 1.82 8.04 -2.39 -0.02 1.80 16 31 H 0.09 1.61 8.12 -2.39 -0.02 1.59 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 1.38 8.04 -2.39 -0.02 1.36 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.40 6.92 -2.39 -0.02 1.38 16 38 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.09 1.67 6.41 -2.39 -0.02 1.65 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 41 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -67.61 330.68 2.90 -64.72 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.99 Total: 16.20 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 4.00 Total: -12.18 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -3.95 Total: -68.30 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -0.17 Total: -45.70 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -67.61 2.90 -64.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805881859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.843 kcal (2) G-P(sol) polarization free energy of solvation -67.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds