Wall clock time and date at job start Mon Mar 30 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47350 * 2 1 4 4 C 1.50701 * 109.46843 * 240.00368 * 2 1 3 5 5 H 1.08001 * 119.99793 * 240.00254 * 4 2 1 6 6 C 1.37876 * 120.00514 * 59.99734 * 4 2 1 7 7 N 1.31519 * 119.99474 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00464 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46836 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47058 * 119.99955 * 8 6 4 11 11 H 1.48497 * 109.47581 * 240.00224 * 8 6 4 12 12 C 1.50695 * 109.47528 * 120.00150 * 2 1 3 13 13 O 1.21276 * 120.00076 * 119.99483 * 12 2 1 14 14 N 1.34775 * 119.99713 * 300.00335 * 12 2 1 15 15 C 1.46501 * 119.99970 * 179.97438 * 14 12 2 16 16 H 1.09007 * 115.54992 * 9.27417 * 15 14 12 17 17 C 1.53000 * 117.50040 * 223.60695 * 15 14 12 18 18 C 1.53002 * 60.02940 * 252.49639 * 17 15 14 19 19 H 1.09000 * 117.49996 * 107.50493 * 18 17 15 20 20 C 1.53002 * 117.49773 * 252.51785 * 18 17 15 21 21 C 1.53175 * 109.54506 * 248.16742 * 20 18 17 22 22 C 1.53099 * 109.15949 * 183.15229 * 21 20 18 23 23 O 1.42902 * 109.41638 * 57.60903 * 22 21 20 24 24 C 1.42902 * 114.09762 * 298.84072 * 23 22 21 25 25 C 1.53092 * 109.41636 * 61.15654 * 24 23 22 26 26 H 1.08999 * 109.46829 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46356 * 299.99726 * 1 2 3 28 28 H 1.09001 * 109.47105 * 59.99439 * 1 2 3 29 29 H 0.97005 * 119.99769 * 179.97438 * 7 6 4 30 30 H 0.96995 * 120.00501 * 359.97438 * 14 12 2 31 31 H 1.09002 * 117.49833 * 359.97438 * 17 15 14 32 32 H 1.09002 * 117.49953 * 144.99785 * 17 15 14 33 33 H 1.09004 * 109.54283 * 8.43497 * 20 18 17 34 34 H 1.08995 * 109.52442 * 303.05431 * 21 20 18 35 35 H 1.08996 * 109.52196 * 63.25203 * 21 20 18 36 36 H 1.08999 * 109.47907 * 297.62261 * 22 21 20 37 37 H 1.09007 * 109.47607 * 177.59303 * 22 21 20 38 38 H 1.09000 * 109.47624 * 301.17741 * 24 23 22 39 39 H 1.09003 * 109.47837 * 181.13890 * 24 23 22 40 40 H 1.08993 * 109.52021 * 182.48589 * 25 24 23 41 41 H 1.08999 * 109.57282 * 62.32724 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1473 -2.2862 -3.6039 10 1 1.1676 -1.5865 -4.8166 11 1 3.1471 -0.1857 -4.8162 12 6 2.0325 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7069 -0.2500 2.4545 15 6 2.1948 -0.9409 3.6506 16 1 2.9383 -1.7183 3.4741 17 6 1.2026 -1.1590 4.7947 18 6 2.3192 -0.1229 4.9385 19 1 2.0379 0.9293 4.8958 20 6 3.4777 -0.4589 5.8796 21 6 3.4354 0.4704 7.0965 22 6 4.6422 0.1799 7.9928 23 8 5.8449 0.3525 7.2407 24 6 5.9615 -0.5233 6.1175 25 6 4.8078 -0.2612 5.1459 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.7094 1.1619 -3.4844 30 1 1.1495 0.5388 2.5436 31 1 0.1868 -0.7881 4.6575 32 1 1.2932 -2.0799 5.3708 33 1 3.3926 -1.4951 6.2073 34 1 3.4700 1.5078 6.7640 35 1 2.5162 0.2965 7.6558 36 1 4.5855 -0.8456 8.3576 37 1 4.6405 0.8675 8.8387 38 1 5.9221 -1.5581 6.4579 39 1 6.9103 -0.3424 5.6124 40 1 4.8699 -0.9581 4.3102 41 1 4.8695 0.7611 4.7730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830207833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:31 Heat of formation + Delta-G solvation = -80.961284 kcal Electronic energy + Delta-G solvation = -20468.343192 eV Core-core repulsion = 17348.128767 eV Total energy + Delta-G solvation = -3120.214424 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.89254 -38.84739 -37.12564 -33.74064 -33.67875 -31.79330 -31.25556 -30.09829 -25.60326 -25.14039 -23.82882 -23.14778 -21.39374 -20.96240 -20.21029 -19.31588 -16.65080 -16.37974 -16.15500 -16.00506 -15.48782 -14.95381 -14.67082 -14.36026 -14.04248 -13.87611 -13.46906 -13.18564 -12.61619 -12.50490 -12.44230 -11.92690 -11.61649 -11.52348 -11.24823 -11.13344 -11.03008 -10.84348 -10.70192 -10.68718 -10.44149 -10.23971 -10.05300 -9.91815 -9.63333 -8.96833 -8.63628 -8.34126 -8.19574 -6.03593 -4.06633 3.32310 3.39815 3.47730 3.50119 3.69158 3.73924 4.02571 4.45594 4.51780 4.65211 4.74774 4.82284 4.95107 5.06915 5.10196 5.20524 5.23847 5.30022 5.37234 5.51046 5.53073 5.63826 5.72894 5.76172 5.88478 5.89168 6.02942 6.13270 6.27160 6.37965 6.60608 6.81796 6.91199 7.01540 7.09235 7.46763 7.74903 7.98483 8.13647 8.43228 9.02891 9.21360 9.59086 11.04151 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032734 B = 0.003695 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.179532 B = 7576.515295 C = 8024.670703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.053 0.947 4 C -0.500 4.500 5 H 0.075 0.925 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.523 3.477 13 O -0.545 6.545 14 N -0.718 5.718 15 C 0.098 3.902 16 H 0.131 0.869 17 C -0.194 4.194 18 C -0.161 4.161 19 H 0.105 0.895 20 C -0.054 4.054 21 C -0.147 4.147 22 C 0.060 3.940 23 O -0.386 6.386 24 C 0.060 3.940 25 C -0.151 4.151 26 H 0.031 0.969 27 H 0.011 0.989 28 H 0.093 0.907 29 H 0.260 0.740 30 H 0.397 0.603 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.639 0.205 19.592 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.071 0.929 4 C -0.538 4.538 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.314 3.686 13 O -0.420 6.420 14 N -0.369 5.369 15 C -0.009 4.009 16 H 0.149 0.851 17 C -0.233 4.233 18 C -0.181 4.181 19 H 0.123 0.877 20 C -0.073 4.073 21 C -0.185 4.185 22 C -0.017 4.017 23 O -0.305 6.305 24 C -0.016 4.016 25 C -0.189 4.189 26 H 0.050 0.950 27 H 0.030 0.970 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.231 0.769 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.224 -0.283 19.354 19.622 hybrid contribution -0.415 -0.146 -0.812 0.923 sum 2.809 -0.429 18.542 18.758 Atomic orbital electron populations 1.21746 0.96510 0.99842 1.00922 1.18890 0.94172 0.96872 0.89284 0.92943 1.21188 1.30889 1.12795 0.88961 0.90703 1.24957 0.95123 0.95078 0.99147 1.69885 1.37218 1.23112 1.23440 0.86397 0.78626 0.79788 0.82453 1.19543 1.21054 1.21029 1.22022 0.78185 0.84171 0.84264 1.90518 1.37952 1.26872 1.86655 1.45775 1.54551 1.31827 1.04753 1.21550 0.99759 0.98654 0.80977 0.85103 1.23568 0.95735 1.00399 1.03611 1.22819 0.98180 0.97556 0.99535 0.87706 1.20731 0.93299 0.99276 0.93990 1.22216 0.98720 1.00672 0.96873 1.22576 0.84430 1.00828 0.93828 1.87924 1.39821 1.60964 1.41745 1.22617 0.99040 0.93183 0.86773 1.22235 0.94148 1.03696 0.98820 0.94969 0.96979 0.88796 0.93020 0.76914 0.88695 0.88574 0.91018 0.90916 0.90818 0.93370 0.89065 0.93303 0.88815 0.90318 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.87 37.16 0.33 -2.70 16 2 C 0.03 0.72 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.50 -14.22 8.37 -34.44 -0.29 -14.51 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.21 11.32 55.43 0.63 -24.58 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 11.91 7.15 -10.99 -0.08 11.83 16 13 O -0.54 -14.15 15.03 5.56 0.08 -14.07 16 14 N -0.72 -12.47 5.46 -53.77 -0.29 -12.77 16 15 C 0.10 1.44 5.68 -67.89 -0.39 1.05 16 16 H 0.13 2.16 6.91 -51.93 -0.36 1.80 16 17 C -0.19 -2.25 10.10 -26.73 -0.27 -2.52 16 18 C -0.16 -1.82 5.09 -90.58 -0.46 -2.28 16 19 H 0.10 1.16 8.11 -51.93 -0.42 0.74 16 20 C -0.05 -0.54 2.43 -90.44 -0.22 -0.76 16 21 C -0.15 -1.28 5.40 -26.59 -0.14 -1.42 16 22 C 0.06 0.52 6.84 37.21 0.25 0.77 16 23 O -0.39 -4.32 10.77 -35.23 -0.38 -4.70 16 24 C 0.06 0.61 6.84 37.20 0.25 0.86 16 25 C -0.15 -1.66 5.21 -26.59 -0.14 -1.80 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 28 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.40 6.02 8.25 -40.82 -0.34 5.68 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.10 1.00 8.05 -51.93 -0.42 0.59 16 33 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.94 7.42 -51.93 -0.39 0.56 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -31.17 330.12 -8.25 -39.42 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.76 Total: 4.41 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -1.49 Total: -9.50 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.33 Total: -37.35 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.30 Total: -18.77 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.17 -8.25 -39.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830207833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.543 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds