Wall clock time and date at job start Mon Mar 30 2020 05:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47350 * 2 1 4 4 C 1.50701 * 109.46843 * 240.00368 * 2 1 3 5 5 H 1.08001 * 119.99793 * 240.00254 * 4 2 1 6 6 C 1.37876 * 120.00514 * 59.99734 * 4 2 1 7 7 N 1.31519 * 119.99474 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00464 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46836 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47058 * 119.99955 * 8 6 4 11 11 H 1.48497 * 109.47581 * 240.00224 * 8 6 4 12 12 C 1.50695 * 109.47528 * 120.00150 * 2 1 3 13 13 O 1.21276 * 120.00076 * 119.99483 * 12 2 1 14 14 N 1.34775 * 119.99713 * 300.00335 * 12 2 1 15 15 C 1.46501 * 119.99970 * 179.97438 * 14 12 2 16 16 H 1.09007 * 115.54992 * 9.27417 * 15 14 12 17 17 C 1.53000 * 117.50040 * 223.60695 * 15 14 12 18 18 C 1.53002 * 60.02940 * 252.49639 * 17 15 14 19 19 H 1.09000 * 117.49996 * 107.50493 * 18 17 15 20 20 C 1.53002 * 117.49773 * 252.51785 * 18 17 15 21 21 C 1.53175 * 109.54506 * 248.16742 * 20 18 17 22 22 C 1.53099 * 109.15949 * 183.15229 * 21 20 18 23 23 O 1.42902 * 109.41638 * 57.60903 * 22 21 20 24 24 C 1.42902 * 114.09762 * 298.84072 * 23 22 21 25 25 C 1.53092 * 109.41636 * 61.15654 * 24 23 22 26 26 H 1.08999 * 109.46829 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46356 * 299.99726 * 1 2 3 28 28 H 1.09001 * 109.47105 * 59.99439 * 1 2 3 29 29 H 0.97005 * 119.99769 * 179.97438 * 7 6 4 30 30 H 0.96995 * 120.00501 * 359.97438 * 14 12 2 31 31 H 1.09002 * 117.49833 * 359.97438 * 17 15 14 32 32 H 1.09002 * 117.49953 * 144.99785 * 17 15 14 33 33 H 1.09004 * 109.54283 * 8.43497 * 20 18 17 34 34 H 1.08995 * 109.52442 * 303.05431 * 21 20 18 35 35 H 1.08996 * 109.52196 * 63.25203 * 21 20 18 36 36 H 1.08999 * 109.47907 * 297.62261 * 22 21 20 37 37 H 1.09007 * 109.47607 * 177.59303 * 22 21 20 38 38 H 1.09000 * 109.47624 * 301.17741 * 24 23 22 39 39 H 1.09003 * 109.47837 * 181.13890 * 24 23 22 40 40 H 1.08993 * 109.52021 * 182.48589 * 25 24 23 41 41 H 1.08999 * 109.57282 * 62.32724 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1473 -2.2862 -3.6039 10 1 1.1676 -1.5865 -4.8166 11 1 3.1471 -0.1857 -4.8162 12 6 2.0325 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7069 -0.2500 2.4545 15 6 2.1948 -0.9409 3.6506 16 1 2.9383 -1.7183 3.4741 17 6 1.2026 -1.1590 4.7947 18 6 2.3192 -0.1229 4.9385 19 1 2.0379 0.9293 4.8958 20 6 3.4777 -0.4589 5.8796 21 6 3.4354 0.4704 7.0965 22 6 4.6422 0.1799 7.9928 23 8 5.8449 0.3525 7.2407 24 6 5.9615 -0.5233 6.1175 25 6 4.8078 -0.2612 5.1459 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 0.7094 1.1619 -3.4844 30 1 1.1495 0.5388 2.5436 31 1 0.1868 -0.7881 4.6575 32 1 1.2932 -2.0799 5.3708 33 1 3.3926 -1.4951 6.2073 34 1 3.4700 1.5078 6.7640 35 1 2.5162 0.2965 7.6558 36 1 4.5855 -0.8456 8.3576 37 1 4.6405 0.8675 8.8387 38 1 5.9221 -1.5581 6.4579 39 1 6.9103 -0.3424 5.6124 40 1 4.8699 -0.9581 4.3102 41 1 4.8695 0.7611 4.7730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830207833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:30 Heat of formation + Delta-G solvation = -101.083469 kcal Electronic energy + Delta-G solvation = -20469.215755 eV Core-core repulsion = 17348.128767 eV Total energy + Delta-G solvation = -3121.086988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.97258 -40.21035 -38.31561 -35.77916 -34.85186 -33.23126 -32.00582 -31.91785 -27.22141 -26.45828 -24.96308 -24.48699 -22.59625 -21.97643 -21.36848 -20.71232 -18.40232 -17.81017 -17.53249 -16.91627 -16.79983 -16.40800 -15.81774 -15.71498 -15.44661 -14.95500 -14.70549 -14.54571 -14.28017 -13.71926 -13.53593 -13.27149 -12.98441 -12.79652 -12.72987 -12.60065 -12.36923 -12.25569 -12.13316 -12.06103 -12.02834 -11.74137 -11.27416 -11.05494 -10.94318 -10.61017 -10.44275 -10.31557 -9.54939 -8.16496 -6.26869 1.38775 1.40712 1.54243 1.84632 2.27672 2.48311 2.89543 2.99606 3.13288 3.61307 3.72934 3.89300 4.01292 4.10015 4.16560 4.20717 4.35367 4.36194 4.45405 4.62285 4.71649 4.73543 4.80553 4.83574 4.88701 4.92390 4.95503 4.98467 5.05056 5.17499 5.19335 5.24682 5.45583 5.48205 5.65995 5.74772 5.93608 6.20080 6.28628 6.72318 6.85061 7.38747 7.53282 8.89608 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.032734 B = 0.003695 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.179532 B = 7576.515295 C = 8024.670703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.024 3.976 3 H 0.041 0.959 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.274 1.274 12 C 0.524 3.476 13 O -0.587 6.587 14 N -0.698 5.698 15 C 0.056 3.944 16 H 0.108 0.892 17 C -0.170 4.170 18 C -0.135 4.135 19 H 0.114 0.886 20 C -0.054 4.054 21 C -0.141 4.141 22 C 0.054 3.946 23 O -0.405 6.405 24 C 0.062 3.938 25 C -0.150 4.150 26 H 0.022 0.978 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.265 0.735 30 H 0.410 0.590 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.778 0.495 21.464 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.002 3.998 3 H 0.059 0.941 4 C -0.567 4.567 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.314 3.686 13 O -0.467 6.467 14 N -0.348 5.348 15 C -0.050 4.050 16 H 0.126 0.874 17 C -0.208 4.208 18 C -0.154 4.154 19 H 0.132 0.868 20 C -0.073 4.073 21 C -0.178 4.178 22 C -0.022 4.022 23 O -0.325 6.325 24 C -0.015 4.015 25 C -0.188 4.188 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.246 0.754 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.334 0.046 21.277 21.405 hybrid contribution -0.141 -0.204 -1.317 1.341 sum 2.193 -0.158 19.959 20.080 Atomic orbital electron populations 1.21554 0.94941 0.99440 1.01751 1.18820 0.95430 0.95902 0.89607 0.94130 1.21320 1.31561 1.12712 0.91148 0.93383 1.25604 0.95183 0.95757 1.01452 1.69958 1.37268 1.23563 1.24279 0.85536 0.78376 0.78585 0.79353 1.20459 1.19852 1.19924 1.21544 0.78020 0.83610 0.85441 1.90492 1.40019 1.28719 1.87436 1.45408 1.53544 1.31747 1.04114 1.21656 1.02031 1.00220 0.81067 0.87431 1.23653 0.95760 1.01141 1.00270 1.22859 0.98375 0.97830 0.96385 0.86843 1.20777 0.91941 1.00325 0.94211 1.22176 0.99751 0.99716 0.96200 1.22783 0.83395 1.02100 0.93929 1.87902 1.41191 1.61392 1.41999 1.22618 0.98649 0.93722 0.86492 1.22184 0.95608 1.02255 0.98757 0.95834 0.92946 0.91041 0.92579 0.75403 0.87571 0.86889 0.90102 0.91582 0.88823 0.92175 0.87478 0.92123 0.88658 0.92037 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.87 71.98 0.64 -4.79 16 2 C 0.02 1.20 2.64 -12.28 -0.03 1.17 16 3 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.53 -31.01 8.37 25.60 0.21 -30.80 16 5 H 0.05 3.02 6.75 -2.91 -0.02 3.00 16 6 C 0.02 1.08 5.30 84.65 0.45 1.53 16 7 N -0.91 -51.39 11.32 21.45 0.24 -51.15 16 8 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 9 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.52 24.37 7.15 87.66 0.63 25.00 16 13 O -0.59 -31.78 15.03 -3.02 -0.05 -31.82 16 14 N -0.70 -23.86 5.46 -442.43 -2.42 -26.28 16 15 C 0.06 1.61 5.68 45.01 0.26 1.87 16 16 H 0.11 3.64 6.91 -2.38 -0.02 3.62 16 17 C -0.17 -3.43 10.10 30.60 0.31 -3.12 16 18 C -0.14 -2.73 5.09 -10.77 -0.05 -2.78 16 19 H 0.11 2.16 8.11 -2.39 -0.02 2.14 16 20 C -0.05 -0.97 2.43 -10.67 -0.03 -0.99 16 21 C -0.14 -2.03 5.40 30.69 0.17 -1.87 16 22 C 0.05 0.79 6.84 72.02 0.49 1.28 16 23 O -0.41 -8.44 10.77 -148.98 -1.60 -10.05 16 24 C 0.06 1.18 6.84 72.01 0.49 1.68 16 25 C -0.15 -3.24 5.21 30.69 0.16 -3.08 16 26 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.91 7.56 -2.39 -0.02 1.89 16 28 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 29 H 0.26 14.09 8.31 -92.70 -0.77 13.31 16 30 H 0.41 11.73 8.25 -92.71 -0.76 10.97 16 31 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.11 1.95 8.05 -2.39 -0.02 1.93 16 33 H 0.08 1.34 7.90 -2.38 -0.02 1.32 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.53 7.42 -2.39 -0.02 1.51 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -68.79 330.12 2.14 -66.65 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.25 Total: 20.30 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 3.69 Total: -14.92 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -2.17 Total: -77.43 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -1.65 Total: -41.87 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -68.79 2.14 -66.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830207833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.436 kcal (2) G-P(sol) polarization free energy of solvation -68.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds