Wall clock time and date at job start Mon Mar 30 2020 05:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46638 * 2 1 4 4 C 1.50699 * 109.47045 * 119.99928 * 2 1 3 5 5 H 1.07998 * 119.99677 * 120.00296 * 4 2 1 6 6 C 1.37880 * 120.00099 * 299.99976 * 4 2 1 7 7 N 1.31516 * 119.99638 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00095 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47217 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47438 * 120.00163 * 8 6 4 11 11 H 1.48508 * 109.47192 * 240.00269 * 8 6 4 12 12 C 1.50697 * 109.47414 * 240.00381 * 2 1 3 13 13 O 1.21278 * 119.99752 * 239.99945 * 12 2 1 14 14 N 1.34774 * 120.00396 * 59.99684 * 12 2 1 15 15 C 1.46493 * 120.00271 * 180.02562 * 14 12 2 16 16 H 1.09006 * 115.56274 * 9.31045 * 15 14 12 17 17 C 1.53001 * 117.50084 * 223.62059 * 15 14 12 18 18 C 1.52990 * 60.00282 * 252.50723 * 17 15 14 19 19 H 1.09005 * 117.52053 * 107.47719 * 18 17 15 20 20 C 1.52993 * 117.50150 * 252.50788 * 18 17 15 21 21 C 1.53181 * 109.54592 * 248.61868 * 20 18 17 22 22 C 1.53090 * 109.16481 * 183.14811 * 21 20 18 23 23 O 1.42905 * 109.41466 * 57.61337 * 22 21 20 24 24 C 1.42905 * 114.09831 * 298.84306 * 23 22 21 25 25 C 1.53087 * 109.41504 * 61.15479 * 24 23 22 26 26 H 1.08994 * 109.47642 * 300.00001 * 1 2 3 27 27 H 1.09008 * 109.47171 * 60.00204 * 1 2 3 28 28 H 1.09000 * 109.47375 * 179.97438 * 1 2 3 29 29 H 0.97010 * 119.99590 * 180.02562 * 7 6 4 30 30 H 0.96998 * 119.99848 * 0.02562 * 14 12 2 31 31 H 1.08998 * 117.49857 * 145.01475 * 17 15 14 32 32 H 1.08998 * 117.49855 * 359.97438 * 17 15 14 33 33 H 1.08997 * 109.62053 * 8.84425 * 20 18 17 34 34 H 1.09007 * 109.52008 * 63.24902 * 21 20 18 35 35 H 1.08997 * 109.57581 * 303.09233 * 21 20 18 36 36 H 1.08998 * 109.48371 * 297.63244 * 22 21 20 37 37 H 1.09004 * 109.48242 * 177.59100 * 22 21 20 38 38 H 1.08994 * 109.48072 * 181.14100 * 24 23 22 39 39 H 1.09001 * 109.47741 * 301.17313 * 24 23 22 40 40 H 1.09001 * 109.52122 * 182.48887 * 25 24 23 41 41 H 1.08995 * 109.57446 * 62.33001 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3224 -1.1194 4.0079 9 1 3.1484 -2.2856 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1677 -1.5866 4.8165 12 6 2.0324 -0.7103 -1.2305 13 8 2.7296 -1.6963 -1.1192 14 7 1.7068 -0.2499 -2.4546 15 6 2.1948 -0.9407 -3.6507 16 1 2.6788 -1.9014 -3.4744 17 6 2.7317 -0.0785 -4.7949 18 6 1.3821 -0.7847 -4.9376 19 1 0.4841 -0.1684 -4.8942 20 6 1.3110 -1.9890 -5.8785 21 6 0.4575 -1.6351 -7.1003 22 6 0.3270 -2.8692 -7.9968 23 8 -0.2469 -3.9421 -7.2473 24 6 0.5314 -4.3479 -6.1197 25 6 0.6703 -3.1732 -5.1479 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7086 1.1613 3.4844 30 1 1.1494 0.5389 -2.5436 31 1 3.5690 -0.4718 -5.3713 32 1 2.7215 1.0028 -4.6578 33 1 2.3158 -2.2607 -6.2020 34 1 0.9355 -0.8292 -7.6574 35 1 -0.5322 -1.3153 -6.7743 36 1 1.3130 -3.1635 -8.3561 37 1 -0.3148 -2.6352 -8.8462 38 1 0.0371 -5.1791 -5.6169 39 1 1.5202 -4.6615 -6.4544 40 1 1.3004 -3.4673 -4.3085 41 1 -0.3146 -2.8848 -4.7805 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830207835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:32 Heat of formation + Delta-G solvation = -80.987061 kcal Electronic energy + Delta-G solvation = -20509.996425 eV Core-core repulsion = 17389.780883 eV Total energy + Delta-G solvation = -3120.215542 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.89241 -38.84750 -37.12809 -33.74128 -33.67742 -31.79500 -31.25441 -30.09574 -25.60075 -25.13613 -23.83048 -23.15926 -21.37211 -20.96307 -20.21030 -19.32822 -16.64272 -16.37944 -16.15577 -16.00277 -15.48807 -14.95386 -14.66687 -14.35857 -14.03796 -13.89516 -13.51365 -13.09180 -12.65266 -12.51319 -12.44137 -11.91774 -11.61388 -11.51917 -11.24954 -11.12244 -11.02933 -10.87256 -10.71239 -10.64483 -10.44966 -10.24075 -10.05331 -9.91599 -9.63263 -8.96844 -8.63945 -8.33712 -8.19679 -6.03580 -4.06617 3.32300 3.39800 3.47513 3.50072 3.69385 3.74655 4.02277 4.45475 4.51857 4.65316 4.74949 4.82471 4.95262 5.07106 5.10357 5.20553 5.23921 5.30114 5.37223 5.51133 5.53239 5.64052 5.73064 5.76054 5.88332 5.89393 6.02983 6.13359 6.27314 6.38147 6.60993 6.82062 6.91482 7.01676 7.09302 7.46860 7.75151 7.98518 8.13759 8.43256 9.02913 9.21381 9.59090 11.04130 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033605 B = 0.003689 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.000202 B = 7588.391868 C = 7839.744262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.053 0.947 4 C -0.500 4.500 5 H 0.075 0.925 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.523 3.477 13 O -0.545 6.545 14 N -0.718 5.718 15 C 0.098 3.902 16 H 0.131 0.869 17 C -0.194 4.194 18 C -0.161 4.161 19 H 0.105 0.895 20 C -0.054 4.054 21 C -0.147 4.147 22 C 0.060 3.940 23 O -0.386 6.386 24 C 0.061 3.939 25 C -0.151 4.151 26 H 0.093 0.907 27 H 0.011 0.989 28 H 0.031 0.969 29 H 0.260 0.740 30 H 0.397 0.603 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 -2.726 -19.589 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.314 3.686 13 O -0.420 6.420 14 N -0.369 5.369 15 C -0.009 4.009 16 H 0.149 0.851 17 C -0.233 4.233 18 C -0.181 4.181 19 H 0.123 0.877 20 C -0.073 4.073 21 C -0.185 4.185 22 C -0.017 4.017 23 O -0.305 6.305 24 C -0.016 4.016 25 C -0.189 4.189 26 H 0.112 0.888 27 H 0.030 0.970 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.231 0.769 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.250 -3.438 -19.352 19.695 hybrid contribution 0.263 0.332 0.813 0.917 sum -0.986 -3.106 -18.539 18.824 Atomic orbital electron populations 1.21741 0.96477 0.99851 1.00918 1.18889 0.94185 0.96859 0.89280 0.92969 1.21187 1.30888 1.12801 0.88960 0.90702 1.24957 0.95121 0.95079 0.99147 1.69885 1.37174 1.23152 1.23436 0.86398 0.78626 0.79787 0.82452 1.19544 1.21053 1.21033 1.22024 0.78171 0.84186 0.84266 1.90518 1.37899 1.26924 1.86657 1.45773 1.54511 1.31867 1.04752 1.21536 1.00305 0.98107 0.80987 0.85111 1.23566 0.96609 0.99537 1.03618 1.22801 0.95811 0.99908 0.99548 0.87705 1.20728 0.99060 0.93530 0.93966 1.22216 1.01076 0.98352 0.96844 1.22575 0.98462 0.86748 0.93875 1.87925 1.48752 1.52267 1.41512 1.22614 0.95622 0.96696 0.86675 1.22233 1.02533 0.95297 0.98825 0.88810 0.96976 0.94964 0.93020 0.76914 0.88560 0.88696 0.91021 0.90828 0.90922 0.93371 0.89067 0.88821 0.93305 0.90328 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.87 37.16 0.33 -2.70 16 2 C 0.03 0.72 2.64 -92.93 -0.25 0.48 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.22 8.37 -34.44 -0.29 -14.51 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.20 11.32 55.43 0.63 -24.58 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 11.91 7.15 -10.99 -0.08 11.83 16 13 O -0.54 -14.16 15.03 5.56 0.08 -14.07 16 14 N -0.72 -12.47 5.46 -53.81 -0.29 -12.77 16 15 C 0.10 1.44 5.68 -67.93 -0.39 1.05 16 16 H 0.13 2.16 6.93 -51.93 -0.36 1.80 16 17 C -0.19 -2.25 10.10 -26.74 -0.27 -2.52 16 18 C -0.16 -1.82 5.08 -90.63 -0.46 -2.28 16 19 H 0.10 1.16 8.12 -51.93 -0.42 0.74 16 20 C -0.05 -0.54 2.42 -90.43 -0.22 -0.76 16 21 C -0.15 -1.28 5.41 -26.59 -0.14 -1.43 16 22 C 0.06 0.52 6.84 37.20 0.25 0.78 16 23 O -0.39 -4.33 10.77 -35.23 -0.38 -4.71 16 24 C 0.06 0.61 6.84 37.20 0.25 0.86 16 25 C -0.15 -1.67 5.22 -26.59 -0.14 -1.81 16 26 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 27 H 0.01 0.22 7.57 -51.92 -0.39 -0.17 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.40 6.02 8.25 -40.82 -0.34 5.68 16 31 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.69 7.91 -51.93 -0.41 0.28 16 34 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.95 7.45 -51.93 -0.39 0.56 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -31.16 330.18 -8.25 -39.42 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.76 Total: 4.41 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -1.49 Total: -9.50 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.33 Total: -37.34 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.30 Total: -18.78 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.16 -8.25 -39.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830207835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.571 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds