Wall clock time and date at job start Mon Mar 30 2020 05:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46638 * 2 1 4 4 C 1.50699 * 109.47045 * 119.99928 * 2 1 3 5 5 H 1.07998 * 119.99677 * 120.00296 * 4 2 1 6 6 C 1.37880 * 120.00099 * 299.99976 * 4 2 1 7 7 N 1.31516 * 119.99638 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00095 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47217 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47438 * 120.00163 * 8 6 4 11 11 H 1.48508 * 109.47192 * 240.00269 * 8 6 4 12 12 C 1.50697 * 109.47414 * 240.00381 * 2 1 3 13 13 O 1.21278 * 119.99752 * 239.99945 * 12 2 1 14 14 N 1.34774 * 120.00396 * 59.99684 * 12 2 1 15 15 C 1.46493 * 120.00271 * 180.02562 * 14 12 2 16 16 H 1.09006 * 115.56274 * 9.31045 * 15 14 12 17 17 C 1.53001 * 117.50084 * 223.62059 * 15 14 12 18 18 C 1.52990 * 60.00282 * 252.50723 * 17 15 14 19 19 H 1.09005 * 117.52053 * 107.47719 * 18 17 15 20 20 C 1.52993 * 117.50150 * 252.50788 * 18 17 15 21 21 C 1.53181 * 109.54592 * 248.61868 * 20 18 17 22 22 C 1.53090 * 109.16481 * 183.14811 * 21 20 18 23 23 O 1.42905 * 109.41466 * 57.61337 * 22 21 20 24 24 C 1.42905 * 114.09831 * 298.84306 * 23 22 21 25 25 C 1.53087 * 109.41504 * 61.15479 * 24 23 22 26 26 H 1.08994 * 109.47642 * 300.00001 * 1 2 3 27 27 H 1.09008 * 109.47171 * 60.00204 * 1 2 3 28 28 H 1.09000 * 109.47375 * 179.97438 * 1 2 3 29 29 H 0.97010 * 119.99590 * 180.02562 * 7 6 4 30 30 H 0.96998 * 119.99848 * 0.02562 * 14 12 2 31 31 H 1.08998 * 117.49857 * 145.01475 * 17 15 14 32 32 H 1.08998 * 117.49855 * 359.97438 * 17 15 14 33 33 H 1.08997 * 109.62053 * 8.84425 * 20 18 17 34 34 H 1.09007 * 109.52008 * 63.24902 * 21 20 18 35 35 H 1.08997 * 109.57581 * 303.09233 * 21 20 18 36 36 H 1.08998 * 109.48371 * 297.63244 * 22 21 20 37 37 H 1.09004 * 109.48242 * 177.59100 * 22 21 20 38 38 H 1.08994 * 109.48072 * 181.14100 * 24 23 22 39 39 H 1.09001 * 109.47741 * 301.17313 * 24 23 22 40 40 H 1.09001 * 109.52122 * 182.48887 * 25 24 23 41 41 H 1.08995 * 109.57446 * 62.33001 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3224 -1.1194 4.0079 9 1 3.1484 -2.2856 3.6038 10 1 3.1471 -0.1857 4.8161 11 1 1.1677 -1.5866 4.8165 12 6 2.0324 -0.7103 -1.2305 13 8 2.7296 -1.6963 -1.1192 14 7 1.7068 -0.2499 -2.4546 15 6 2.1948 -0.9407 -3.6507 16 1 2.6788 -1.9014 -3.4744 17 6 2.7317 -0.0785 -4.7949 18 6 1.3821 -0.7847 -4.9376 19 1 0.4841 -0.1684 -4.8942 20 6 1.3110 -1.9890 -5.8785 21 6 0.4575 -1.6351 -7.1003 22 6 0.3270 -2.8692 -7.9968 23 8 -0.2469 -3.9421 -7.2473 24 6 0.5314 -4.3479 -6.1197 25 6 0.6703 -3.1732 -5.1479 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7086 1.1613 3.4844 30 1 1.1494 0.5389 -2.5436 31 1 3.5690 -0.4718 -5.3713 32 1 2.7215 1.0028 -4.6578 33 1 2.3158 -2.2607 -6.2020 34 1 0.9355 -0.8292 -7.6574 35 1 -0.5322 -1.3153 -6.7743 36 1 1.3130 -3.1635 -8.3561 37 1 -0.3148 -2.6352 -8.8462 38 1 0.0371 -5.1791 -5.6169 39 1 1.5202 -4.6615 -6.4544 40 1 1.3004 -3.4673 -4.3085 41 1 -0.3146 -2.8848 -4.7805 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830207835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:32 Heat of formation + Delta-G solvation = -101.097003 kcal Electronic energy + Delta-G solvation = -20510.868458 eV Core-core repulsion = 17389.780883 eV Total energy + Delta-G solvation = -3121.087575 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97365 -40.20911 -38.31881 -35.78015 -34.85066 -33.23459 -32.00415 -31.91611 -27.22329 -26.45075 -24.98310 -24.48119 -22.57373 -21.97951 -21.37218 -20.72331 -18.39563 -17.80453 -17.54088 -16.91265 -16.79762 -16.41170 -15.83710 -15.69295 -15.44087 -14.98705 -14.70584 -14.46888 -14.32439 -13.75829 -13.49197 -13.27738 -12.98448 -12.82544 -12.69165 -12.60456 -12.39213 -12.25043 -12.12870 -12.06125 -12.02568 -11.74398 -11.26879 -11.05474 -10.94534 -10.61342 -10.44157 -10.31560 -9.54920 -8.16480 -6.26843 1.38789 1.40754 1.54270 1.84522 2.27921 2.48324 2.89523 2.99710 3.13285 3.61382 3.72987 3.89469 4.01531 4.10111 4.16680 4.20816 4.35493 4.36136 4.45466 4.62351 4.71794 4.73134 4.80748 4.83865 4.88603 4.91880 4.95722 4.98714 5.04635 5.17702 5.19474 5.24738 5.45709 5.48077 5.65984 5.74662 5.93358 6.19970 6.28762 6.72318 6.85063 7.38757 7.53288 8.89593 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033605 B = 0.003689 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.000202 B = 7588.391868 C = 7839.744262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 H 0.042 0.958 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.524 3.476 13 O -0.587 6.587 14 N -0.698 5.698 15 C 0.056 3.944 16 H 0.108 0.892 17 C -0.171 4.171 18 C -0.134 4.134 19 H 0.114 0.886 20 C -0.054 4.054 21 C -0.141 4.141 22 C 0.054 3.946 23 O -0.405 6.405 24 C 0.062 3.938 25 C -0.150 4.150 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.021 0.979 29 H 0.265 0.735 30 H 0.410 0.590 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.743 -1.987 -21.451 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.003 3.997 3 H 0.060 0.940 4 C -0.567 4.567 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.314 3.686 13 O -0.467 6.467 14 N -0.348 5.348 15 C -0.050 4.050 16 H 0.126 0.874 17 C -0.209 4.209 18 C -0.154 4.154 19 H 0.132 0.868 20 C -0.072 4.072 21 C -0.178 4.178 22 C -0.022 4.022 23 O -0.325 6.325 24 C -0.015 4.015 25 C -0.188 4.188 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.246 0.754 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.504 -2.658 -21.265 21.483 hybrid contribution 0.328 0.125 1.315 1.361 sum -1.176 -2.534 -19.950 20.144 Atomic orbital electron populations 1.21549 0.95016 0.99369 1.01712 1.18817 0.95350 0.95961 0.89604 0.94021 1.21319 1.31560 1.12720 0.91144 0.93380 1.25603 0.95180 0.95757 1.01450 1.69958 1.37220 1.23602 1.24277 0.85536 0.78369 0.78591 0.79354 1.20460 1.19902 1.19877 1.21546 0.78011 0.83621 0.85443 1.90493 1.40001 1.28737 1.87437 1.45407 1.53523 1.31767 1.04114 1.21641 1.03931 0.98312 0.81075 0.87435 1.23652 0.97230 0.99704 1.00305 1.22840 0.96098 1.00066 0.96382 0.86821 1.20774 0.99856 0.92418 0.94198 1.22176 1.00503 0.99014 0.96155 1.22781 0.99459 0.85978 0.93985 1.87903 1.49583 1.53227 1.41763 1.22615 0.96222 0.96249 0.86395 1.22181 1.01408 0.96442 0.98746 0.91031 0.93024 0.95946 0.92577 0.75401 0.86876 0.87602 0.90133 0.88849 0.91557 0.92194 0.87477 0.88657 0.92147 0.92061 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.87 71.98 0.64 -4.79 16 2 C 0.02 1.21 2.64 -12.29 -0.03 1.18 16 3 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.53 -31.00 8.37 25.60 0.21 -30.79 16 5 H 0.05 3.02 6.75 -2.91 -0.02 3.00 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -51.36 11.32 21.45 0.24 -51.12 16 8 Si 0.96 45.23 29.54 68.60 2.03 47.25 16 9 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 C 0.52 24.36 7.15 87.66 0.63 24.99 16 13 O -0.59 -31.78 15.03 -3.02 -0.05 -31.82 16 14 N -0.70 -23.86 5.46 -442.55 -2.42 -26.27 16 15 C 0.06 1.61 5.68 44.99 0.26 1.87 16 16 H 0.11 3.63 6.93 -2.38 -0.02 3.62 16 17 C -0.17 -3.45 10.10 30.59 0.31 -3.14 16 18 C -0.13 -2.71 5.08 -10.80 -0.05 -2.77 16 19 H 0.11 2.16 8.12 -2.38 -0.02 2.14 16 20 C -0.05 -0.96 2.42 -10.67 -0.03 -0.99 16 21 C -0.14 -2.03 5.41 30.68 0.17 -1.86 16 22 C 0.05 0.79 6.84 72.01 0.49 1.28 16 23 O -0.41 -8.43 10.77 -148.98 -1.60 -10.03 16 24 C 0.06 1.18 6.84 72.01 0.49 1.68 16 25 C -0.15 -3.23 5.22 30.69 0.16 -3.07 16 26 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 27 H 0.05 1.90 7.57 -2.38 -0.02 1.88 16 28 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 30 H 0.41 11.73 8.25 -92.71 -0.76 10.97 16 31 H 0.11 1.96 8.05 -2.39 -0.02 1.94 16 32 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 1.34 7.91 -2.39 -0.02 1.32 16 34 H 0.09 1.01 8.14 -2.38 -0.02 1.00 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 1.52 7.45 -2.39 -0.02 1.50 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -68.73 330.18 2.14 -66.58 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.25 Total: 20.30 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 3.69 Total: -14.89 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -2.17 Total: -77.39 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.65 Total: -41.85 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -68.73 2.14 -66.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830207835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.513 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds