Wall clock time and date at job start Mon Mar 30 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47259 * 2 1 4 4 C 1.42897 * 114.00125 * 180.02562 * 3 2 1 5 5 C 1.53887 * 113.58707 * 247.66580 * 4 3 2 6 6 C 1.53263 * 86.88405 * 220.42661 * 5 4 3 7 7 C 1.52456 * 128.58716 * 165.11247 * 6 5 4 8 8 C 1.52460 * 128.58078 * 245.06320 * 6 5 4 9 9 H 1.08996 * 117.51540 * 349.83641 * 8 6 5 10 10 C 1.50697 * 117.51261 * 134.94845 * 8 6 5 11 11 O 1.21293 * 120.00308 * 359.97438 * 10 8 6 12 12 N 1.34782 * 119.99765 * 179.97438 * 10 8 6 13 13 C 1.37102 * 119.99804 * 179.97438 * 12 10 8 14 14 H 1.08005 * 120.00075 * 318.73879 * 13 12 10 15 15 C 1.38948 * 119.99886 * 138.73379 * 13 12 10 16 16 N 1.31414 * 120.00054 * 342.10843 * 15 13 12 17 17 Si 1.86796 * 119.99901 * 162.10812 * 15 13 12 18 18 H 1.48500 * 109.47532 * 60.00156 * 17 15 13 19 19 H 1.48501 * 109.47285 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47413 * 300.00241 * 17 15 13 21 21 C 1.46501 * 120.00372 * 359.97438 * 12 10 8 22 22 C 1.53005 * 109.46462 * 84.71552 * 21 12 10 23 23 C 1.53258 * 87.68899 * 25.07964 * 6 5 4 24 24 H 1.08994 * 109.47694 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47338 * 300.00053 * 1 2 3 26 26 H 1.09002 * 109.47334 * 59.99645 * 1 2 3 27 27 H 1.08996 * 109.46698 * 239.99682 * 2 1 3 28 28 H 1.08995 * 109.46957 * 120.00301 * 2 1 3 29 29 H 1.09000 * 112.82772 * 18.88306 * 4 3 2 30 30 H 1.08994 * 113.65001 * 334.91910 * 5 4 3 31 31 H 1.09006 * 113.64735 * 105.92965 * 5 4 3 32 32 H 1.09000 * 117.51616 * 225.04395 * 7 6 5 33 33 H 1.08999 * 117.51347 * 10.15042 * 7 6 5 34 34 H 0.97002 * 119.99682 * 179.97438 * 16 15 13 35 35 H 1.08990 * 109.47340 * 204.71853 * 21 12 10 36 36 H 1.08995 * 109.47045 * 324.71990 * 21 12 10 37 37 H 1.08999 * 109.46448 * 180.02562 * 22 21 12 38 38 H 1.08997 * 109.47234 * 300.00319 * 22 21 12 39 39 H 1.08995 * 109.47133 * 60.00492 * 22 21 12 40 40 H 1.09003 * 113.64350 * 220.41651 * 23 6 5 41 41 H 1.09002 * 113.63982 * 89.42247 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 4.0030 2.0427 1.3038 6 6 4.9775 2.8341 0.4246 7 6 5.8499 4.0248 0.8058 8 6 6.4953 2.7156 0.3428 9 1 6.9941 2.1061 1.0963 10 6 7.1189 2.6939 -1.0289 11 8 6.4173 2.7689 -2.0154 12 7 8.4565 2.5912 -1.1594 13 6 9.0239 2.5709 -2.4074 14 1 8.5613 2.0040 -3.2018 15 6 10.1940 3.2798 -2.6501 16 7 10.5678 4.2328 -1.8261 17 14 11.2357 2.8782 -4.1477 18 1 10.4312 3.0814 -5.3793 19 1 12.4227 3.7699 -4.1786 20 1 11.6817 1.4636 -4.0756 21 6 9.3041 2.5011 0.0321 22 6 9.3785 1.0450 0.4960 23 6 3.9481 2.7262 -0.7057 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 3.9274 0.5459 -0.3261 30 1 3.2977 2.6701 1.8487 31 1 4.4894 1.3011 1.9375 32 1 5.8767 4.8701 0.1181 33 1 5.9243 4.2763 1.8637 34 1 11.3849 4.7274 -1.9954 35 1 10.3058 2.8580 -0.2068 36 1 8.8798 3.1145 0.8270 37 1 10.0087 0.9781 1.3828 38 1 8.3767 0.6881 0.7349 39 1 9.8028 0.4317 -0.2988 40 1 4.3905 2.5327 -1.6830 41 1 3.2275 3.5440 -0.7202 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864998010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:20 Heat of formation + Delta-G solvation = -30.908147 kcal Electronic energy + Delta-G solvation = -20897.571239 eV Core-core repulsion = 17779.527282 eV Total energy + Delta-G solvation = -3118.043958 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.86897 -38.20964 -36.65540 -34.80930 -32.93088 -31.88779 -30.55989 -29.41245 -25.57945 -25.40708 -23.15748 -22.90133 -22.03869 -21.83611 -19.25790 -17.50618 -16.83767 -16.73517 -16.10249 -15.55628 -15.03805 -14.90168 -14.17264 -14.00095 -13.74426 -13.21698 -13.12289 -12.83980 -12.68715 -12.29198 -12.15084 -11.84996 -11.76215 -11.50545 -11.39303 -11.19980 -11.03482 -10.94617 -10.88998 -10.41720 -10.33585 -10.18005 -10.07949 -9.72233 -9.34552 -9.23892 -8.87622 -8.19959 -7.38244 -6.29375 -3.98016 3.20329 3.26236 3.29584 3.61956 3.80614 4.12150 4.45845 4.61793 4.85133 4.99395 5.02749 5.05692 5.06888 5.18367 5.29718 5.32298 5.46604 5.51001 5.63391 5.79770 5.82651 5.90191 5.97003 5.99026 6.03299 6.10671 6.14090 6.25539 6.34917 6.43061 6.47300 6.58481 6.62092 6.82212 6.90243 7.25283 7.43135 7.60357 8.33388 8.56616 9.23713 9.44052 10.08310 10.75713 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028891 B = 0.004408 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.918632 B = 6351.062250 C = 6663.113182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.066 3.934 5 C -0.112 4.112 6 C -0.135 4.135 7 C -0.136 4.136 8 C -0.144 4.144 9 H 0.112 0.888 10 C 0.491 3.509 11 O -0.574 6.574 12 N -0.438 5.438 13 C -0.309 4.309 14 H 0.087 0.913 15 C 0.039 3.961 16 N -0.872 5.872 17 Si 0.918 3.082 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.105 3.895 22 C -0.166 4.166 23 C -0.098 4.098 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.267 0.733 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.042 0.958 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.912 -6.027 8.159 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.297 6.297 4 C 0.009 3.991 5 C -0.150 4.150 6 C -0.136 4.136 7 C -0.173 4.173 8 C -0.165 4.165 9 H 0.129 0.871 10 C 0.279 3.721 11 O -0.458 6.458 12 N -0.157 5.157 13 C -0.437 4.437 14 H 0.104 0.896 15 C -0.165 4.165 16 N -0.509 5.509 17 Si 0.744 3.256 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.020 4.020 22 C -0.224 4.224 23 C -0.135 4.135 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.124 0.876 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.187 -5.696 7.669 13.965 hybrid contribution 0.983 -0.355 -0.429 1.130 sum -9.204 -6.051 7.240 13.181 Atomic orbital electron populations 1.21741 0.94154 1.01905 1.02974 1.22463 0.95258 0.84607 0.99885 1.87925 1.21391 1.25701 1.94652 1.23614 0.79844 0.98733 0.96939 1.23044 0.96849 0.98590 0.96470 1.21619 0.90472 1.01967 0.99537 1.22704 1.01863 0.91618 1.01135 1.22239 0.93192 1.02161 0.98895 0.87055 1.19494 0.83566 0.80976 0.88051 1.90435 1.61228 1.54443 1.39693 1.43368 1.03246 1.63136 1.05919 1.19326 1.07255 1.28768 0.88384 0.89566 1.25419 0.99062 0.93733 0.98324 1.69924 1.23959 1.18736 1.38295 0.86145 0.79115 0.78359 0.81933 1.19739 1.20997 1.19925 1.21436 0.99461 0.93739 0.87327 1.22247 1.00416 0.99344 1.00399 1.22841 0.94902 0.95919 0.99793 0.91434 0.92044 0.91903 0.93465 0.93697 0.89682 0.89131 0.91709 0.88338 0.88616 0.92262 0.87957 0.93231 0.93160 0.93915 0.92454 0.87626 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.16 0.38 -1.01 16 2 C 0.05 0.62 6.50 37.16 0.24 0.87 16 3 O -0.38 -5.53 10.35 -35.23 -0.36 -5.89 16 4 C 0.07 1.01 4.31 -25.81 -0.11 0.90 16 5 C -0.11 -1.59 7.93 -26.13 -0.21 -1.79 16 6 C -0.14 -2.31 2.88 -154.80 -0.45 -2.75 16 7 C -0.14 -2.32 10.24 -26.94 -0.28 -2.60 16 8 C -0.14 -2.75 4.77 -91.98 -0.44 -3.19 16 9 H 0.11 1.93 6.01 -51.93 -0.31 1.61 16 10 C 0.49 12.08 7.38 -10.98 -0.08 12.00 16 11 O -0.57 -15.82 14.01 5.55 0.08 -15.74 16 12 N -0.44 -11.14 2.50 -114.81 -0.29 -11.43 16 13 C -0.31 -8.61 8.84 -14.93 -0.13 -8.74 16 14 H 0.09 2.50 7.82 -52.48 -0.41 2.09 16 15 C 0.04 1.04 4.96 -17.47 -0.09 0.95 16 16 N -0.87 -23.69 11.60 55.50 0.64 -23.05 16 17 Si 0.92 20.72 29.59 -169.99 -5.03 15.69 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 21 C 0.10 2.28 5.28 -4.04 -0.02 2.26 16 22 C -0.17 -2.98 10.02 37.16 0.37 -2.61 16 23 C -0.10 -1.73 7.46 -26.14 -0.20 -1.92 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 1.29 7.87 -51.93 -0.41 0.88 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.10 2.46 5.76 -51.93 -0.30 2.16 16 36 H 0.05 1.00 6.95 -51.93 -0.36 0.64 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.04 0.72 6.86 -51.93 -0.36 0.36 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.11 2.21 5.83 -51.93 -0.30 1.91 16 41 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 333.32 15.07 5.02 5.02 Total: -1.00 -30.57 333.32 -7.59 -38.16 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.66 Total: 4.88 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -1.00 Total: -7.65 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.36 Total: -34.48 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.29 Total: -21.63 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.57 -7.59 -38.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864998010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.253 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds