Wall clock time and date at job start Mon Mar 30 2020 05:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46508 * 109.46836 * 2 1 4 4 C 1.46494 * 119.99947 * 274.11346 * 3 2 1 5 5 C 1.50699 * 109.46979 * 269.99783 * 4 3 2 6 6 H 1.07992 * 120.00228 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99950 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99645 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 119.99877 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47414 * 60.00191 * 9 7 5 11 11 H 1.48503 * 109.46910 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47147 * 299.99801 * 9 7 5 13 13 C 1.34777 * 119.99572 * 94.11283 * 3 2 1 14 14 O 1.21278 * 120.00147 * 5.09704 * 13 3 2 15 15 C 1.50705 * 119.99659 * 184.82759 * 13 3 2 16 16 H 1.09001 * 110.45506 * 33.54760 * 15 13 3 17 17 C 1.54511 * 110.50873 * 270.79936 * 15 13 3 18 18 C 1.54483 * 104.05903 * 241.35588 * 17 15 13 19 19 O 1.44418 * 104.80456 * 336.01682 * 18 17 15 20 20 C 1.44429 * 105.27585 * 40.51564 * 19 18 17 21 21 H 1.09006 * 110.37255 * 78.31375 * 20 19 18 22 22 C 1.52995 * 110.46938 * 200.60855 * 20 19 18 23 23 C 1.52999 * 117.49537 * 4.18031 * 22 20 19 24 24 C 1.53001 * 117.49609 * 295.52310 * 22 20 19 25 25 H 1.09002 * 109.47446 * 295.08052 * 1 2 3 26 26 H 1.08997 * 109.47228 * 55.08148 * 1 2 3 27 27 H 1.08998 * 109.46849 * 175.08226 * 1 2 3 28 28 H 1.08996 * 109.47422 * 240.00351 * 2 1 3 29 29 H 1.08998 * 109.47248 * 119.99849 * 2 1 3 30 30 H 1.09000 * 109.47526 * 30.00334 * 4 3 2 31 31 H 1.09006 * 109.47036 * 149.99862 * 4 3 2 32 32 H 0.97009 * 119.99747 * 180.02562 * 8 7 5 33 33 H 1.09000 * 110.51074 * 359.97438 * 17 15 13 34 34 H 1.08994 * 110.51190 * 122.70643 * 17 15 13 35 35 H 1.08998 * 110.36606 * 217.18520 * 18 17 15 36 36 H 1.09003 * 110.37118 * 94.85166 * 18 17 15 37 37 H 1.08998 * 115.55143 * 149.85306 * 22 20 19 38 38 H 1.08994 * 117.50204 * 0.02562 * 23 22 20 39 39 H 1.09004 * 117.49686 * 145.01932 * 23 22 20 40 40 H 1.09000 * 117.49359 * 214.97510 * 24 22 20 41 41 H 1.08992 * 117.50194 * 359.97304 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1766 2.1022 -1.2654 5 6 3.5671 1.8771 -1.8012 6 1 4.2630 1.2586 -1.2541 7 6 3.9507 2.4609 -2.9900 8 7 3.1033 3.2145 -3.6559 9 14 5.6739 2.1813 -3.6544 10 1 5.8870 0.7295 -3.8826 11 1 5.8349 2.9132 -4.9365 12 1 6.6701 2.6796 -2.6722 13 6 2.3218 1.9887 1.1642 14 8 2.2795 1.3642 2.2030 15 6 2.7196 3.4423 1.1745 16 1 2.1876 3.9883 0.3954 17 6 4.2473 3.5867 0.9939 18 6 4.7143 4.2837 2.2911 19 8 3.5454 4.9778 2.7784 20 6 2.4443 4.0691 2.5592 21 1 2.4302 3.2974 3.3290 22 6 1.1172 4.8302 2.5450 23 6 1.1762 6.3551 2.6553 24 6 0.6846 5.5201 3.8403 25 1 -0.3634 0.4356 0.9308 26 1 -0.3633 0.5882 -0.8426 27 1 -0.3633 -1.0239 -0.0881 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.4457 1.7359 -1.9863 31 1 2.0196 3.1679 -1.0985 32 1 3.3731 3.6250 -4.4925 33 1 4.7149 2.6067 0.8978 34 1 4.4725 4.2055 0.1254 35 1 5.5136 4.9923 2.0744 36 1 5.0482 3.5449 3.0197 37 1 0.3357 4.4008 1.9182 38 1 2.1605 6.8161 2.7375 39 1 0.4332 6.9289 2.1012 40 1 -0.3816 5.5449 4.0654 41 1 1.3452 5.4314 4.7027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906376303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:44 Heat of formation + Delta-G solvation = -63.817638 kcal Electronic energy + Delta-G solvation = -21698.164247 eV Core-core repulsion = 18578.693227 eV Total energy + Delta-G solvation = -3119.471020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.13563 -38.27484 -36.18947 -35.23638 -32.88845 -32.04267 -30.13563 -28.81600 -27.06928 -24.27473 -23.13164 -22.61473 -22.11776 -21.13535 -20.05970 -18.26473 -16.69550 -16.56081 -16.10158 -15.72793 -15.06007 -14.77834 -14.60908 -14.36068 -13.98208 -13.39369 -13.36460 -12.74999 -12.47215 -12.28299 -11.93086 -11.74823 -11.50989 -11.40171 -11.26812 -11.11098 -10.99941 -10.94031 -10.74842 -10.52309 -10.49502 -10.10790 -10.01000 -9.90055 -9.76887 -9.36261 -8.95828 -8.56831 -7.75641 -6.21470 -4.28472 3.20771 3.26388 3.26680 3.33674 3.79039 4.03316 4.19016 4.30982 4.77360 5.06590 5.11317 5.17902 5.21625 5.31786 5.36886 5.51182 5.67451 5.70676 5.77425 5.78381 5.81849 5.84791 5.86553 6.04473 6.14312 6.23682 6.26767 6.30904 6.39325 6.43521 6.48442 6.61401 6.61839 6.77653 7.14370 7.16065 7.50575 7.73129 8.02507 8.30009 8.75044 8.96754 9.38904 10.85313 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.007175 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.179527 B = 3901.345363 C = 4728.349351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 N -0.592 5.592 4 C 0.236 3.764 5 C -0.534 4.534 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.526 3.474 14 O -0.575 6.575 15 C -0.127 4.127 16 H 0.108 0.892 17 C -0.125 4.125 18 C 0.046 3.954 19 O -0.372 6.372 20 C 0.116 3.884 21 H 0.089 0.911 22 C -0.151 4.151 23 C -0.165 4.165 24 C -0.177 4.177 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.526 2.108 8.325 8.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.322 5.322 4 C 0.116 3.884 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.314 3.686 14 O -0.457 6.457 15 C -0.149 4.149 16 H 0.126 0.874 17 C -0.163 4.163 18 C -0.031 4.031 19 O -0.291 6.291 20 C 0.058 3.942 21 H 0.107 0.893 22 C -0.169 4.169 23 C -0.202 4.202 24 C -0.214 4.214 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.590 2.102 8.737 9.352 hybrid contribution 0.942 -0.378 -0.926 1.374 sum -1.648 1.725 7.811 8.167 Atomic orbital electron populations 1.22112 0.96835 1.01324 1.01871 1.21254 0.93383 0.83960 1.02568 1.48235 1.62439 1.13501 1.08039 1.19464 0.97315 0.92380 0.79212 1.21398 0.98009 1.31303 1.06578 0.92234 1.24914 0.97534 0.94796 0.96435 1.69909 1.35124 1.31825 1.16023 0.86613 0.84403 0.78483 0.78333 1.20175 1.21137 1.20031 1.20152 0.76331 0.88782 0.83332 1.90568 1.55762 1.66746 1.32609 1.22525 0.98765 0.94354 0.99209 0.87375 1.22702 0.92742 1.02394 0.98438 1.23440 0.89012 0.95998 0.94653 1.89023 1.16435 1.40034 1.83644 1.22398 0.85664 0.90489 0.95610 0.89319 1.22313 0.97580 0.95348 1.01663 1.22865 1.03079 0.92919 1.01312 1.22923 1.00994 1.05026 0.92469 0.93031 0.92420 0.92361 0.90617 0.90851 0.94712 0.94238 0.92449 0.90155 0.89221 0.89233 0.92582 0.87053 0.87709 0.89244 0.89153 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.11 2.05 6.21 -4.04 -0.03 2.03 16 3 N -0.59 -12.30 2.46 -175.06 -0.43 -12.73 16 4 C 0.24 5.45 5.07 -5.20 -0.03 5.42 16 5 C -0.53 -13.39 9.10 -34.44 -0.31 -13.71 16 6 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -23.98 13.29 55.43 0.74 -23.24 16 9 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 C 0.53 10.86 6.64 -10.98 -0.07 10.79 16 14 O -0.58 -12.81 15.11 5.56 0.08 -12.72 16 15 C -0.13 -2.37 2.28 -90.20 -0.21 -2.58 16 16 H 0.11 2.10 5.91 -51.93 -0.31 1.79 16 17 C -0.12 -2.24 6.44 -25.16 -0.16 -2.40 16 18 C 0.05 0.71 7.63 37.94 0.29 1.00 16 19 O -0.37 -6.23 9.79 -35.23 -0.34 -6.57 16 20 C 0.12 1.98 3.13 -25.96 -0.08 1.90 16 21 H 0.09 1.65 6.84 -51.93 -0.36 1.29 16 22 C -0.15 -2.29 5.60 -90.62 -0.51 -2.79 16 23 C -0.16 -2.23 9.90 -26.69 -0.26 -2.50 16 24 C -0.18 -2.30 10.25 -26.69 -0.27 -2.57 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 29 H 0.07 1.36 7.24 -51.93 -0.38 0.98 16 30 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.04 0.95 5.81 -51.93 -0.30 0.65 16 32 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.08 1.54 7.73 -51.93 -0.40 1.14 16 34 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.11 1.68 8.13 -51.93 -0.42 1.26 16 38 H 0.10 1.50 7.07 -51.93 -0.37 1.13 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -27.66 333.74 -8.03 -35.68 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.72 Total: 5.45 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.36 Total: -5.99 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.31 Total: -35.97 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.26 Total: -19.30 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.66 -8.03 -35.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906376303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.134 kcal (2) G-P(sol) polarization free energy of solvation -27.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds