Wall clock time and date at job start Mon Mar 30 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46508 * 109.46836 * 2 1 4 4 C 1.46494 * 119.99947 * 274.11346 * 3 2 1 5 5 C 1.50699 * 109.46979 * 269.99783 * 4 3 2 6 6 H 1.07992 * 120.00228 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99950 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99645 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 119.99877 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47414 * 60.00191 * 9 7 5 11 11 H 1.48503 * 109.46910 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47147 * 299.99801 * 9 7 5 13 13 C 1.34777 * 119.99572 * 94.11283 * 3 2 1 14 14 O 1.21278 * 120.00147 * 5.09704 * 13 3 2 15 15 C 1.50705 * 119.99659 * 184.82759 * 13 3 2 16 16 H 1.09001 * 110.45506 * 33.54760 * 15 13 3 17 17 C 1.54511 * 110.50873 * 270.79936 * 15 13 3 18 18 C 1.54483 * 104.05903 * 241.35588 * 17 15 13 19 19 O 1.44418 * 104.80456 * 336.01682 * 18 17 15 20 20 C 1.44429 * 105.27585 * 40.51564 * 19 18 17 21 21 H 1.09006 * 110.37255 * 78.31375 * 20 19 18 22 22 C 1.52995 * 110.46938 * 200.60855 * 20 19 18 23 23 C 1.52999 * 117.49537 * 4.18031 * 22 20 19 24 24 C 1.53001 * 117.49609 * 295.52310 * 22 20 19 25 25 H 1.09002 * 109.47446 * 295.08052 * 1 2 3 26 26 H 1.08997 * 109.47228 * 55.08148 * 1 2 3 27 27 H 1.08998 * 109.46849 * 175.08226 * 1 2 3 28 28 H 1.08996 * 109.47422 * 240.00351 * 2 1 3 29 29 H 1.08998 * 109.47248 * 119.99849 * 2 1 3 30 30 H 1.09000 * 109.47526 * 30.00334 * 4 3 2 31 31 H 1.09006 * 109.47036 * 149.99862 * 4 3 2 32 32 H 0.97009 * 119.99747 * 180.02562 * 8 7 5 33 33 H 1.09000 * 110.51074 * 359.97438 * 17 15 13 34 34 H 1.08994 * 110.51190 * 122.70643 * 17 15 13 35 35 H 1.08998 * 110.36606 * 217.18520 * 18 17 15 36 36 H 1.09003 * 110.37118 * 94.85166 * 18 17 15 37 37 H 1.08998 * 115.55143 * 149.85306 * 22 20 19 38 38 H 1.08994 * 117.50204 * 0.02562 * 23 22 20 39 39 H 1.09004 * 117.49686 * 145.01932 * 23 22 20 40 40 H 1.09000 * 117.49359 * 214.97510 * 24 22 20 41 41 H 1.08992 * 117.50194 * 359.97304 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1766 2.1022 -1.2654 5 6 3.5671 1.8771 -1.8012 6 1 4.2630 1.2586 -1.2541 7 6 3.9507 2.4609 -2.9900 8 7 3.1033 3.2145 -3.6559 9 14 5.6739 2.1813 -3.6544 10 1 5.8870 0.7295 -3.8826 11 1 5.8349 2.9132 -4.9365 12 1 6.6701 2.6796 -2.6722 13 6 2.3218 1.9887 1.1642 14 8 2.2795 1.3642 2.2030 15 6 2.7196 3.4423 1.1745 16 1 2.1876 3.9883 0.3954 17 6 4.2473 3.5867 0.9939 18 6 4.7143 4.2837 2.2911 19 8 3.5454 4.9778 2.7784 20 6 2.4443 4.0691 2.5592 21 1 2.4302 3.2974 3.3290 22 6 1.1172 4.8302 2.5450 23 6 1.1762 6.3551 2.6553 24 6 0.6846 5.5201 3.8403 25 1 -0.3634 0.4356 0.9308 26 1 -0.3633 0.5882 -0.8426 27 1 -0.3633 -1.0239 -0.0881 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.4457 1.7359 -1.9863 31 1 2.0196 3.1679 -1.0985 32 1 3.3731 3.6250 -4.4925 33 1 4.7149 2.6067 0.8978 34 1 4.4725 4.2055 0.1254 35 1 5.5136 4.9923 2.0744 36 1 5.0482 3.5449 3.0197 37 1 0.3357 4.4008 1.9182 38 1 2.1605 6.8161 2.7375 39 1 0.4332 6.9289 2.1012 40 1 -0.3816 5.5449 4.0654 41 1 1.3452 5.4314 4.7027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906376303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:43 Heat of formation + Delta-G solvation = -78.069441 kcal Electronic energy + Delta-G solvation = -21698.782251 eV Core-core repulsion = 18578.693227 eV Total energy + Delta-G solvation = -3120.089025 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.63891 -39.76644 -37.34498 -36.96437 -34.75249 -33.58240 -31.65148 -30.15622 -28.94323 -25.66510 -25.01030 -24.00339 -23.17405 -22.58205 -21.32636 -19.91164 -18.48768 -18.28608 -17.58166 -17.19502 -16.51212 -16.33562 -16.07663 -15.77845 -15.50544 -14.83351 -14.66312 -14.37349 -14.22733 -13.77445 -13.42921 -13.32211 -13.15749 -12.91954 -12.69034 -12.63784 -12.35807 -12.30634 -12.21317 -12.17429 -11.94479 -11.81502 -11.61867 -11.18010 -11.09321 -10.85947 -10.56555 -10.44603 -9.49844 -8.19706 -6.33093 1.42145 1.43349 1.50273 1.66057 2.22418 2.42726 2.80993 2.93498 3.11076 3.52195 3.65905 3.77414 3.99442 4.03989 4.08610 4.16116 4.29868 4.34213 4.38468 4.42476 4.52892 4.56823 4.76986 4.80379 4.82875 4.87906 4.95355 4.97742 5.03035 5.05075 5.13410 5.19148 5.24689 5.30996 5.36648 5.65192 5.79303 5.84718 6.06135 6.53416 6.79846 7.25379 7.39843 8.86006 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.007175 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.179527 B = 3901.345363 C = 4728.349351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.252 3.748 5 C -0.538 4.538 6 H 0.051 0.949 7 C 0.026 3.974 8 N -0.919 5.919 9 Si 0.950 3.050 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.524 3.476 14 O -0.592 6.592 15 C -0.126 4.126 16 H 0.098 0.902 17 C -0.123 4.123 18 C 0.050 3.950 19 O -0.374 6.374 20 C 0.125 3.875 21 H 0.073 0.927 22 C -0.176 4.176 23 C -0.158 4.158 24 C -0.160 4.160 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.021 0.979 31 H 0.030 0.970 32 H 0.267 0.733 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.325 2.451 8.896 9.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 N -0.326 5.326 4 C 0.132 3.868 5 C -0.576 4.576 6 H 0.070 0.930 7 C -0.175 4.175 8 N -0.558 5.558 9 Si 0.776 3.224 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.313 3.687 14 O -0.475 6.475 15 C -0.148 4.148 16 H 0.116 0.884 17 C -0.162 4.162 18 C -0.027 4.027 19 O -0.293 6.293 20 C 0.067 3.933 21 H 0.091 0.909 22 C -0.194 4.194 23 C -0.195 4.195 24 C -0.197 4.197 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.134 0.866 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.392 2.434 9.318 9.923 hybrid contribution 0.868 -0.527 -1.094 1.492 sum -1.524 1.907 8.224 8.579 Atomic orbital electron populations 1.22017 0.94547 1.03160 1.01311 1.21442 0.95296 0.82640 1.02390 1.48267 1.62589 1.14378 1.07343 1.19111 0.96080 0.91939 0.79711 1.21528 0.98582 1.30915 1.06613 0.93047 1.25565 1.00706 0.94545 0.96670 1.69998 1.36719 1.32675 1.16413 0.85726 0.80570 0.78340 0.77810 1.19947 1.20843 1.19385 1.20439 0.75823 0.89486 0.82925 1.90549 1.56568 1.67393 1.32988 1.22518 0.99103 0.93032 1.00122 0.88441 1.22660 0.92244 1.01650 0.99622 1.23534 0.89183 0.96672 0.93297 1.89023 1.16657 1.40004 1.83600 1.22245 0.86868 0.90444 0.93764 0.90880 1.22294 0.96662 0.96481 1.03981 1.22912 1.03262 0.91675 1.01685 1.23012 1.02259 1.02909 0.91547 0.93492 0.92995 0.89308 0.90670 0.91059 0.96137 0.95226 0.92362 0.91692 0.90153 0.86580 0.91772 0.87416 0.88441 0.87644 0.87047 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 10.24 71.98 0.74 -3.89 16 2 C 0.10 3.83 6.21 86.38 0.54 4.37 16 3 N -0.60 -25.06 2.46 -826.14 -2.03 -27.09 16 4 C 0.25 11.85 5.07 85.63 0.43 12.29 16 5 C -0.54 -27.16 9.10 25.60 0.23 -26.93 16 6 H 0.05 2.65 7.81 -2.91 -0.02 2.62 16 7 C 0.03 1.32 5.46 84.66 0.46 1.78 16 8 N -0.92 -49.62 13.29 21.45 0.28 -49.33 16 9 Si 0.95 40.86 29.54 68.60 2.03 42.89 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 13 C 0.52 21.91 6.64 87.66 0.58 22.49 16 14 O -0.59 -26.52 15.11 -3.02 -0.05 -26.57 16 15 C -0.13 -4.77 2.28 -10.52 -0.02 -4.80 16 16 H 0.10 3.88 5.91 -2.39 -0.01 3.87 16 17 C -0.12 -4.45 6.44 31.61 0.20 -4.24 16 18 C 0.05 1.48 7.63 72.49 0.55 2.03 16 19 O -0.37 -12.09 9.79 -148.98 -1.46 -13.55 16 20 C 0.12 4.23 3.13 31.10 0.10 4.32 16 21 H 0.07 2.71 6.84 -2.38 -0.02 2.70 16 22 C -0.18 -5.20 5.60 -10.80 -0.06 -5.26 16 23 C -0.16 -4.02 9.90 30.62 0.30 -3.72 16 24 C -0.16 -3.84 10.25 30.62 0.31 -3.52 16 25 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.07 2.72 8.10 -2.39 -0.02 2.70 16 29 H 0.07 2.63 7.24 -2.39 -0.02 2.61 16 30 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 31 H 0.03 1.46 5.81 -2.38 -0.01 1.45 16 32 H 0.27 13.78 8.31 -92.70 -0.77 13.01 16 33 H 0.06 2.51 7.73 -2.39 -0.02 2.50 16 34 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.11 3.22 8.13 -2.39 -0.02 3.21 16 38 H 0.10 2.63 7.07 -2.39 -0.02 2.61 16 39 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 40 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -57.84 333.74 4.15 -53.69 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 1.00 Total: 25.03 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 4.37 Total: -5.08 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -1.74 Total: -76.42 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -1.50 Total: -40.11 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -57.84 4.15 -53.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906376303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.378 kcal (2) G-P(sol) polarization free energy of solvation -57.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds