Wall clock time and date at job start Mon Mar 30 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99492 * 2 1 4 4 N 1.46508 * 109.47215 * 124.99828 * 3 2 1 5 5 C 1.46504 * 119.99728 * 263.51048 * 4 3 2 6 6 C 1.50702 * 109.46855 * 275.09737 * 5 4 3 7 7 H 1.07992 * 120.00357 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99498 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00134 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99784 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47095 * 59.99817 * 10 8 6 12 12 H 1.48499 * 109.47195 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46964 * 300.00031 * 10 8 6 14 14 C 1.34774 * 119.99956 * 83.50583 * 4 3 2 15 15 O 1.21280 * 119.99878 * 4.59682 * 14 4 3 16 16 C 1.50698 * 119.99827 * 184.59243 * 14 4 3 17 17 H 1.08994 * 109.47283 * 315.47895 * 16 14 4 18 18 C 1.53002 * 109.46852 * 75.47609 * 16 14 4 19 19 C 1.52995 * 109.47222 * 195.47281 * 16 14 4 20 20 H 1.08998 * 109.82704 * 300.57249 * 19 16 14 21 21 C 1.54383 * 109.83334 * 179.58842 * 19 16 14 22 22 C 1.55304 * 102.25724 * 219.13094 * 21 19 16 23 23 C 1.54949 * 100.94096 * 34.13254 * 22 21 19 24 24 O 1.43241 * 109.82982 * 61.45595 * 19 16 14 25 25 H 1.07998 * 119.99717 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99997 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.00475 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47759 * 4.99942 * 3 2 1 29 29 H 1.09000 * 109.47063 * 244.99548 * 3 2 1 30 30 H 1.08994 * 109.47011 * 35.10063 * 5 4 3 31 31 H 1.09001 * 109.46651 * 155.09998 * 5 4 3 32 32 H 0.97000 * 120.00086 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.46977 * 186.59623 * 18 16 14 34 34 H 1.09005 * 109.47078 * 66.60120 * 18 16 14 35 35 H 1.09000 * 109.47198 * 306.60497 * 18 16 14 36 36 H 1.09002 * 110.84697 * 337.32896 * 21 19 16 37 37 H 1.09002 * 110.84557 * 100.94241 * 21 19 16 38 38 H 1.08992 * 111.12748 * 276.21864 * 22 21 19 39 39 H 1.08998 * 111.16292 * 152.06464 * 22 21 19 40 40 H 1.08992 * 110.31441 * 204.63929 * 23 22 21 41 41 H 1.09001 * 110.39072 * 82.51006 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3321 1.1315 5 6 2.6083 1.9926 2.3811 6 6 2.9078 3.4663 2.2834 7 1 3.3422 3.8704 1.3810 8 6 2.6282 4.2985 3.3465 9 7 2.0996 3.8063 4.4456 10 14 2.9987 6.1254 3.2252 11 1 2.2304 6.7125 2.0982 12 1 2.6093 6.7947 4.4923 13 1 4.4517 6.3210 2.9889 14 6 4.2040 0.7491 1.0228 15 8 4.5560 0.2756 -0.0367 16 6 5.1198 0.6858 2.2179 17 1 5.1262 1.6520 2.7224 18 6 4.6230 -0.3910 3.1847 19 6 6.5374 0.3420 1.7565 20 1 6.5359 -0.6190 1.2421 21 6 7.4852 0.2852 2.9738 22 6 8.7783 0.9398 2.4158 23 6 8.1810 1.9928 1.4485 24 8 7.0232 1.3630 0.8770 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6213 1.4027 -0.9313 30 1 1.5417 1.8492 2.5538 31 1 3.1716 1.5614 3.2087 32 1 1.9032 4.3918 5.1937 33 1 5.2137 -0.3579 4.1002 34 1 4.7269 -1.3718 2.7206 35 1 3.5745 -0.2105 3.4219 36 1 7.0843 0.8652 3.8050 37 1 7.6708 -0.7464 3.2730 38 1 9.3862 0.2125 1.8778 39 1 9.3521 1.4170 3.2102 40 1 8.9004 2.2410 0.6684 41 1 7.8921 2.8903 1.9955 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908341260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:51 Heat of formation + Delta-G solvation = -71.079181 kcal Electronic energy + Delta-G solvation = -21558.782057 eV Core-core repulsion = 18438.996153 eV Total energy + Delta-G solvation = -3119.785904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.83848 -38.42697 -35.33013 -33.92019 -32.98008 -32.02384 -31.62675 -27.88311 -27.38918 -25.74925 -23.94203 -22.73987 -21.73604 -20.66915 -19.56822 -17.99760 -16.82373 -16.52243 -16.08063 -15.60993 -15.36556 -14.59668 -14.43718 -14.27034 -14.08784 -13.29644 -12.91357 -12.70617 -12.65745 -12.24980 -12.04485 -11.88264 -11.47481 -11.44042 -11.31501 -11.10322 -10.95282 -10.87293 -10.80746 -10.74963 -10.64912 -10.49801 -10.17333 -9.69409 -9.12309 -9.06956 -8.74570 -8.48978 -7.63175 -6.15717 -4.22387 2.62075 3.25624 3.29953 3.33400 3.55754 4.06219 4.19955 4.37195 4.65537 4.93672 5.04437 5.16766 5.28450 5.36743 5.43091 5.50163 5.60689 5.66690 5.73807 5.79415 5.86124 5.90061 5.95372 6.05505 6.13061 6.17819 6.27992 6.29190 6.42927 6.44526 6.66486 6.84279 6.97620 7.11456 7.24311 7.44396 7.64238 7.80224 8.10318 8.45418 8.84198 9.15443 9.45406 10.90672 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.008542 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.774392 B = 3277.292422 C = 4801.472819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C 0.145 3.855 4 N -0.594 5.594 5 C 0.234 3.766 6 C -0.536 4.536 7 H 0.060 0.940 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.895 3.105 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.528 3.472 15 O -0.565 6.565 16 C -0.122 4.122 17 H 0.110 0.890 18 C -0.139 4.139 19 C 0.104 3.896 20 H 0.082 0.918 21 C -0.151 4.151 22 C -0.156 4.156 23 C 0.046 3.954 24 O -0.362 6.362 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.265 0.735 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.605 -6.829 -1.058 9.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.171 4.171 3 C 0.021 3.979 4 N -0.325 5.325 5 C 0.114 3.886 6 C -0.575 4.575 7 H 0.079 0.921 8 C -0.138 4.138 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.316 3.684 15 O -0.445 6.445 16 C -0.143 4.143 17 H 0.128 0.872 18 C -0.196 4.196 19 C 0.046 3.954 20 H 0.100 0.900 21 C -0.189 4.189 22 C -0.193 4.193 23 C -0.031 4.031 24 O -0.281 6.281 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.121 0.879 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.609 -6.944 -1.602 9.719 hybrid contribution 0.129 1.140 0.390 1.212 sum 6.738 -5.803 -1.212 8.975 Atomic orbital electron populations 1.23750 0.95775 1.01443 1.02436 1.23412 0.96019 0.99446 0.98220 1.20361 0.92219 0.94529 0.90744 1.48172 1.14213 1.54160 1.15906 1.19527 0.96785 0.92049 0.80219 1.21510 1.42244 0.92742 1.01000 0.92143 1.24926 0.94823 0.98935 0.95105 1.69913 1.42808 1.35860 1.04517 0.86596 0.78979 0.84799 0.77349 1.20129 1.21179 1.20109 1.20234 0.81666 0.77284 0.89180 1.90580 1.74955 1.49281 1.29724 1.21666 0.93973 1.02737 0.95945 0.87165 1.21730 1.02627 0.97180 0.98096 1.22518 0.91545 0.91926 0.89392 0.90030 1.23223 0.94932 1.01978 0.98724 1.23250 0.97798 0.98809 0.99475 1.23373 0.87851 0.95653 0.96247 1.88590 1.44494 1.51521 1.43519 0.89013 0.88493 0.87919 0.89853 0.90544 0.94978 0.93590 0.92553 0.91783 0.92769 0.90931 0.89963 0.90188 0.90717 0.90232 0.90302 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.95 14.32 29.01 0.42 -2.54 16 2 C -0.15 -2.63 9.79 -36.03 -0.35 -2.98 16 3 C 0.14 2.87 5.84 -5.19 -0.03 2.84 16 4 N -0.59 -13.06 2.46 -176.43 -0.43 -13.49 16 5 C 0.23 5.63 4.57 -5.19 -0.02 5.60 16 6 C -0.54 -14.23 9.38 -34.44 -0.32 -14.55 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 10 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 11 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.53 11.54 6.57 -10.99 -0.07 11.47 16 15 O -0.57 -13.47 15.38 -2.03 -0.03 -13.50 16 16 C -0.12 -2.29 1.51 -91.77 -0.14 -2.42 16 17 H 0.11 2.30 7.18 -51.93 -0.37 1.93 16 18 C -0.14 -2.19 8.42 37.16 0.31 -1.88 16 19 C 0.10 1.76 2.60 -26.01 -0.07 1.69 16 20 H 0.08 1.41 7.93 -51.93 -0.41 1.00 16 21 C -0.15 -1.93 5.58 -24.79 -0.14 -2.07 16 22 C -0.16 -1.80 7.16 -24.48 -0.18 -1.98 16 23 C 0.05 0.66 7.78 38.19 0.30 0.96 16 24 O -0.36 -6.93 10.42 -42.82 -0.45 -7.37 16 25 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 26 H 0.10 1.42 7.84 -52.49 -0.41 1.00 16 27 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.08 1.63 7.67 -51.93 -0.40 1.23 16 29 H 0.08 1.55 7.56 -51.93 -0.39 1.16 16 30 H 0.03 0.82 8.11 -51.93 -0.42 0.40 16 31 H 0.05 1.11 4.65 -51.93 -0.24 0.87 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.06 0.86 7.29 -51.93 -0.38 0.48 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.24 6.44 -51.93 -0.33 0.91 16 36 H 0.08 1.06 7.56 -51.93 -0.39 0.67 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -30.27 334.70 -7.23 -37.50 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.68 Total: 4.05 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -0.39 Total: -4.23 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.30 Total: -37.28 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.48 Total: -20.87 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.27 -7.23 -37.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908341260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.579 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds