Wall clock time and date at job start Mon Mar 30 2020 05:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50698 * 119.99492 * 2 1 4 4 N 1.46508 * 109.47215 * 124.99828 * 3 2 1 5 5 C 1.46504 * 119.99728 * 263.51048 * 4 3 2 6 6 C 1.50702 * 109.46855 * 275.09737 * 5 4 3 7 7 H 1.07992 * 120.00357 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99498 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00134 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99784 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47095 * 59.99817 * 10 8 6 12 12 H 1.48499 * 109.47195 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46964 * 300.00031 * 10 8 6 14 14 C 1.34774 * 119.99956 * 83.50583 * 4 3 2 15 15 O 1.21280 * 119.99878 * 4.59682 * 14 4 3 16 16 C 1.50698 * 119.99827 * 184.59243 * 14 4 3 17 17 H 1.08994 * 109.47283 * 315.47895 * 16 14 4 18 18 C 1.53002 * 109.46852 * 75.47609 * 16 14 4 19 19 C 1.52995 * 109.47222 * 195.47281 * 16 14 4 20 20 H 1.08998 * 109.82704 * 300.57249 * 19 16 14 21 21 C 1.54383 * 109.83334 * 179.58842 * 19 16 14 22 22 C 1.55304 * 102.25724 * 219.13094 * 21 19 16 23 23 C 1.54949 * 100.94096 * 34.13254 * 22 21 19 24 24 O 1.43241 * 109.82982 * 61.45595 * 19 16 14 25 25 H 1.07998 * 119.99717 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99997 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.00475 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47759 * 4.99942 * 3 2 1 29 29 H 1.09000 * 109.47063 * 244.99548 * 3 2 1 30 30 H 1.08994 * 109.47011 * 35.10063 * 5 4 3 31 31 H 1.09001 * 109.46651 * 155.09998 * 5 4 3 32 32 H 0.97000 * 120.00086 * 179.97438 * 9 8 6 33 33 H 1.09001 * 109.46977 * 186.59623 * 18 16 14 34 34 H 1.09005 * 109.47078 * 66.60120 * 18 16 14 35 35 H 1.09000 * 109.47198 * 306.60497 * 18 16 14 36 36 H 1.09002 * 110.84697 * 337.32896 * 21 19 16 37 37 H 1.09002 * 110.84557 * 100.94241 * 21 19 16 38 38 H 1.08992 * 111.12748 * 276.21864 * 22 21 19 39 39 H 1.08998 * 111.16292 * 152.06464 * 22 21 19 40 40 H 1.08992 * 110.31441 * 204.63929 * 23 22 21 41 41 H 1.09001 * 110.39072 * 82.51006 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3321 1.1315 5 6 2.6083 1.9926 2.3811 6 6 2.9078 3.4663 2.2834 7 1 3.3422 3.8704 1.3810 8 6 2.6282 4.2985 3.3465 9 7 2.0996 3.8063 4.4456 10 14 2.9987 6.1254 3.2252 11 1 2.2304 6.7125 2.0982 12 1 2.6093 6.7947 4.4923 13 1 4.4517 6.3210 2.9889 14 6 4.2040 0.7491 1.0228 15 8 4.5560 0.2756 -0.0367 16 6 5.1198 0.6858 2.2179 17 1 5.1262 1.6520 2.7224 18 6 4.6230 -0.3910 3.1847 19 6 6.5374 0.3420 1.7565 20 1 6.5359 -0.6190 1.2421 21 6 7.4852 0.2852 2.9738 22 6 8.7783 0.9398 2.4158 23 6 8.1810 1.9928 1.4485 24 8 7.0232 1.3630 0.8770 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8501 -0.9352 0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6213 1.4027 -0.9313 30 1 1.5417 1.8492 2.5538 31 1 3.1716 1.5614 3.2087 32 1 1.9032 4.3918 5.1937 33 1 5.2137 -0.3579 4.1002 34 1 4.7269 -1.3718 2.7206 35 1 3.5745 -0.2105 3.4219 36 1 7.0843 0.8652 3.8050 37 1 7.6708 -0.7464 3.2730 38 1 9.3862 0.2125 1.8778 39 1 9.3521 1.4170 3.2102 40 1 8.9004 2.2410 0.6684 41 1 7.8921 2.8903 1.9955 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908341260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:51 Heat of formation + Delta-G solvation = -88.495901 kcal Electronic energy + Delta-G solvation = -21559.537303 eV Core-core repulsion = 18438.996153 eV Total energy + Delta-G solvation = -3120.541150 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.33818 -39.87807 -37.04773 -35.49100 -34.69356 -33.69050 -32.76673 -29.39959 -29.01247 -27.30976 -25.48769 -24.51098 -22.86099 -21.96794 -20.95365 -19.63280 -18.66063 -18.15156 -17.49049 -17.26818 -16.69177 -16.30359 -16.07043 -15.82186 -15.45417 -14.51260 -14.50136 -14.22389 -14.01491 -13.94177 -13.52009 -13.33532 -13.09417 -12.94338 -12.82687 -12.55788 -12.50903 -12.37054 -12.25282 -12.11205 -12.01406 -11.94548 -11.65037 -11.61063 -10.71202 -10.57287 -10.41313 -10.22295 -9.45153 -8.21230 -6.35569 1.27886 1.39830 1.40194 1.48542 1.83857 2.36619 2.52587 2.97750 3.07886 3.58381 3.67271 3.84661 4.00057 4.07934 4.17538 4.20843 4.26878 4.40329 4.47700 4.55065 4.67233 4.77766 4.80961 4.82754 4.90298 4.93372 4.94126 5.01104 5.02568 5.10445 5.16342 5.28254 5.37209 5.62165 5.65116 5.74381 5.94809 6.06561 6.22474 6.59378 6.81903 7.31513 7.44782 8.83665 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.008542 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.774392 B = 3277.292422 C = 4801.472819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.177 4.177 3 C 0.142 3.858 4 N -0.599 5.599 5 C 0.251 3.749 6 C -0.552 4.552 7 H 0.043 0.957 8 C 0.026 3.974 9 N -0.914 5.914 10 Si 0.952 3.048 11 H -0.274 1.274 12 H -0.276 1.276 13 H -0.274 1.274 14 C 0.520 3.480 15 O -0.590 6.590 16 C -0.118 4.118 17 H 0.084 0.916 18 C -0.131 4.131 19 C 0.101 3.899 20 H 0.075 0.925 21 C -0.144 4.144 22 C -0.143 4.143 23 C 0.033 3.967 24 O -0.404 6.404 25 H 0.121 0.879 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.016 0.984 31 H 0.046 0.954 32 H 0.269 0.731 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.276 -7.279 -0.092 10.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.019 3.981 4 N -0.329 5.329 5 C 0.131 3.869 6 C -0.590 4.590 7 H 0.062 0.938 8 C -0.174 4.174 9 N -0.553 5.553 10 Si 0.777 3.223 11 H -0.200 1.200 12 H -0.201 1.201 13 H -0.200 1.200 14 C 0.309 3.691 15 O -0.472 6.472 16 C -0.140 4.140 17 H 0.102 0.898 18 C -0.188 4.188 19 C 0.043 3.957 20 H 0.093 0.907 21 C -0.181 4.181 22 C -0.180 4.180 23 C -0.044 4.044 24 O -0.324 6.324 25 H 0.139 0.861 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.274 -7.396 -0.637 10.394 hybrid contribution -0.147 1.297 0.026 1.306 sum 7.128 -6.099 -0.610 9.400 Atomic orbital electron populations 1.24019 0.94837 1.03085 0.98359 1.23153 0.96747 0.97795 1.01937 1.20420 0.91952 0.96148 0.89531 1.48230 1.14920 1.53954 1.15776 1.19188 0.95514 0.91092 0.81139 1.21643 1.42604 0.94178 1.00606 0.93847 1.25573 0.94484 1.02682 0.94707 1.69983 1.43133 1.37244 1.04953 0.85703 0.78717 0.80198 0.77644 1.19956 1.20063 1.19959 1.20861 0.81741 0.76571 0.89910 1.90549 1.75370 1.50390 1.30871 1.21703 0.94894 1.02449 0.94929 0.89768 1.21699 1.01801 0.96738 0.98600 1.22600 0.91163 0.91030 0.90913 0.90682 1.23228 0.94279 1.03939 0.96696 1.23237 0.97366 0.98024 0.99355 1.23622 0.87128 0.96127 0.97478 1.88545 1.46320 1.52326 1.45228 0.86069 0.87955 0.88279 0.90247 0.91834 0.96635 0.93632 0.92185 0.88972 0.91285 0.92717 0.90075 0.87297 0.89184 0.87715 0.88880 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.72 14.32 67.77 0.97 -3.75 16 2 C -0.18 -6.16 9.79 25.64 0.25 -5.91 16 3 C 0.14 5.84 5.84 85.63 0.50 6.34 16 4 N -0.60 -27.30 2.46 -830.48 -2.04 -29.34 16 5 C 0.25 12.45 4.57 85.63 0.39 12.84 16 6 C -0.55 -29.96 9.38 25.60 0.24 -29.72 16 7 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 8 C 0.03 1.41 5.46 84.66 0.46 1.87 16 9 N -0.91 -50.21 13.29 21.45 0.28 -49.93 16 10 Si 0.95 42.60 29.54 68.60 2.03 44.63 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 C 0.52 23.46 6.57 87.66 0.58 24.04 16 15 O -0.59 -29.06 15.38 4.23 0.07 -29.00 16 16 C -0.12 -4.50 1.51 -11.54 -0.02 -4.52 16 17 H 0.08 3.63 7.18 -2.39 -0.02 3.61 16 18 C -0.13 -4.04 8.42 71.98 0.61 -3.43 16 19 C 0.10 3.38 2.60 31.06 0.08 3.46 16 20 H 0.08 2.57 7.93 -2.39 -0.02 2.55 16 21 C -0.14 -3.36 5.58 31.85 0.18 -3.18 16 22 C -0.14 -2.92 7.16 32.05 0.23 -2.69 16 23 C 0.03 0.92 7.78 72.65 0.57 1.49 16 24 O -0.40 -15.68 10.42 -141.72 -1.48 -17.16 16 25 H 0.12 2.78 8.06 -2.91 -0.02 2.75 16 26 H 0.10 2.82 7.84 -2.91 -0.02 2.80 16 27 H 0.10 3.51 8.06 -2.91 -0.02 3.49 16 28 H 0.08 3.23 7.67 -2.39 -0.02 3.21 16 29 H 0.06 2.71 7.56 -2.39 -0.02 2.70 16 30 H 0.02 0.82 8.11 -2.39 -0.02 0.80 16 31 H 0.05 2.26 4.65 -2.39 -0.01 2.25 16 32 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 33 H 0.09 2.30 7.29 -2.39 -0.02 2.28 16 34 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.05 1.87 6.44 -2.39 -0.02 1.86 16 36 H 0.08 1.92 7.56 -2.39 -0.02 1.90 16 37 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -66.29 334.70 4.88 -61.41 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.99 Total: 22.55 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 5.03 Total: -3.16 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -1.76 Total: -79.27 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -1.41 Total: -46.16 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -66.29 4.88 -61.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908341260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.082 kcal (2) G-P(sol) polarization free energy of solvation -66.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds