Wall clock time and date at job start Mon Mar 30 2020 05:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 119.99821 * 2 1 4 4 N 1.46501 * 109.46809 * 125.00583 * 3 2 1 5 5 C 1.46492 * 120.00457 * 87.44450 * 4 3 2 6 6 C 1.50704 * 109.47114 * 264.42277 * 5 4 3 7 7 H 1.08002 * 119.99634 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00366 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99728 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00480 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47597 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.47230 * 300.00383 * 10 8 6 13 13 H 1.48510 * 109.46871 * 59.99793 * 10 8 6 14 14 C 1.34783 * 119.99494 * 267.44040 * 4 3 2 15 15 O 1.21272 * 120.00224 * 4.23747 * 14 4 3 16 16 C 1.50703 * 119.99747 * 184.23952 * 14 4 3 17 17 H 1.09007 * 109.47050 * 22.12173 * 16 14 4 18 18 C 1.52998 * 109.47132 * 262.12214 * 16 14 4 19 19 C 1.52996 * 109.47097 * 142.12050 * 16 14 4 20 20 H 1.08999 * 109.87080 * 59.29719 * 19 16 14 21 21 C 1.54102 * 109.88030 * 180.30485 * 19 16 14 22 22 C 1.54806 * 104.18811 * 121.45293 * 21 19 16 23 23 C 1.54994 * 102.09242 * 20.88309 * 22 21 19 24 24 O 1.43743 * 109.88130 * 298.29115 * 19 16 14 25 25 H 1.08003 * 120.00575 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.99848 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.00575 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46648 * 5.00353 * 3 2 1 29 29 H 1.08996 * 109.47033 * 245.00417 * 3 2 1 30 30 H 1.09001 * 109.47600 * 144.42186 * 5 4 3 31 31 H 1.09006 * 109.46893 * 24.41748 * 5 4 3 32 32 H 0.96997 * 120.00478 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47189 * 181.23948 * 18 16 14 34 34 H 1.09002 * 109.47088 * 301.24046 * 18 16 14 35 35 H 1.09007 * 109.46841 * 61.23812 * 18 16 14 36 36 H 1.08993 * 110.48978 * 240.13629 * 21 19 16 37 37 H 1.09009 * 110.48197 * 2.64689 * 21 19 16 38 38 H 1.09000 * 110.90980 * 139.08091 * 22 21 19 39 39 H 1.09006 * 110.90968 * 262.65065 * 22 21 19 40 40 H 1.09003 * 110.62044 * 81.47600 * 23 22 21 41 41 H 1.09006 * 110.61624 * 204.31564 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3407 0.7746 0.9855 6 6 4.3538 -0.6460 1.4884 7 1 3.4492 -1.0892 1.8781 8 6 5.5204 -1.3799 1.4510 9 7 6.6217 -0.8403 0.9760 10 14 5.5368 -3.1404 2.0750 11 1 6.9018 -3.7058 1.9260 12 1 5.1453 -3.1616 3.5073 13 1 4.5758 -3.9537 1.2872 14 6 2.6104 1.8693 2.3065 15 8 1.4718 2.2608 2.4515 16 6 3.5967 1.9837 3.4402 17 1 4.6114 1.9653 3.0423 18 6 3.4052 0.8103 4.4031 19 6 3.3654 3.2990 4.1866 20 1 2.3481 3.3297 4.5768 21 6 4.3746 3.4293 5.3439 22 6 5.1346 4.7429 5.0385 23 6 4.1489 5.4762 4.0936 24 8 3.5823 4.4091 3.2996 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3584 2.1316 0.0896 29 1 2.6211 1.4027 -0.9314 30 1 5.0456 1.3714 1.5644 31 1 4.6286 0.7905 -0.0657 32 1 7.4424 -1.3566 0.9494 33 1 4.1036 0.9048 5.2346 34 1 2.3839 0.8159 4.7841 35 1 3.5915 -0.1259 3.8767 36 1 3.8533 3.5030 6.2982 37 1 5.0602 2.5818 5.3493 38 1 5.3000 5.3175 5.9499 39 1 6.0786 4.5378 4.5335 40 1 3.3707 5.9802 4.6668 41 1 4.6805 6.1879 3.4618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908341261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:53 Heat of formation + Delta-G solvation = -69.421789 kcal Electronic energy + Delta-G solvation = -21650.290862 eV Core-core repulsion = 18530.576828 eV Total energy + Delta-G solvation = -3119.714034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.81318 -38.44306 -35.32442 -33.83522 -32.89552 -32.04718 -31.60262 -27.77423 -27.31484 -25.87448 -23.70873 -22.94317 -22.00473 -20.43086 -19.33580 -18.13638 -16.78759 -16.48858 -15.97428 -15.71096 -15.17749 -14.87355 -14.41772 -14.26721 -13.59269 -13.47953 -13.03348 -12.83133 -12.62996 -12.27002 -11.85073 -11.76769 -11.52335 -11.39756 -11.30046 -11.12409 -10.94403 -10.86724 -10.71396 -10.70548 -10.65497 -10.27149 -10.01360 -9.65601 -9.31095 -9.06735 -8.68888 -8.48179 -7.63838 -6.16705 -4.22982 2.78760 3.23060 3.28731 3.31035 3.58174 4.07501 4.13402 4.34522 4.72705 4.94742 5.08131 5.15686 5.28101 5.40993 5.47759 5.53192 5.70563 5.77002 5.78562 5.85065 5.86856 5.95964 5.98888 6.10742 6.12012 6.20661 6.26100 6.41208 6.50158 6.60917 6.80510 6.85211 7.18339 7.20063 7.27799 7.33015 7.62192 7.79536 8.09633 8.42942 8.83070 9.15944 9.43969 10.89900 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014595 B = 0.007710 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.064777 B = 3630.812963 C = 4807.361143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C 0.146 3.854 4 N -0.594 5.594 5 C 0.237 3.763 6 C -0.531 4.531 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.892 3.108 11 H -0.286 1.286 12 H -0.275 1.275 13 H -0.276 1.276 14 C 0.534 3.466 15 O -0.573 6.573 16 C -0.104 4.104 17 H 0.106 0.894 18 C -0.138 4.138 19 C 0.093 3.907 20 H 0.073 0.927 21 C -0.152 4.152 22 C -0.155 4.155 23 C 0.045 3.955 24 O -0.367 6.367 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.265 0.735 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.865 7.151 5.588 9.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.165 4.165 3 C 0.023 3.977 4 N -0.324 5.324 5 C 0.117 3.883 6 C -0.570 4.570 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.719 3.281 11 H -0.212 1.212 12 H -0.200 1.200 13 H -0.202 1.202 14 C 0.323 3.677 15 O -0.453 6.453 16 C -0.125 4.125 17 H 0.124 0.876 18 C -0.196 4.196 19 C 0.035 3.965 20 H 0.091 0.909 21 C -0.190 4.190 22 C -0.193 4.193 23 C -0.032 4.032 24 O -0.286 6.286 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.134 0.866 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.270 7.320 5.371 9.650 hybrid contribution 0.308 -1.189 0.488 1.322 sum -2.962 6.131 5.859 8.983 Atomic orbital electron populations 1.23675 0.95956 1.00949 1.03310 1.23479 0.95868 0.99879 0.97239 1.20389 0.92485 0.95152 0.89706 1.48178 1.16080 1.57749 1.10386 1.19466 0.77005 0.93576 0.98233 1.21456 0.95807 0.97539 1.42160 0.92027 1.24920 0.95387 0.98285 0.95136 1.69912 1.00349 1.37265 1.45373 0.86653 0.77157 0.84682 0.79570 1.21201 1.20045 1.20201 1.20190 0.87921 0.76181 0.83448 1.90555 1.20820 1.51565 1.82405 1.21374 1.01434 0.94430 0.95256 0.87582 1.21737 1.01073 0.98519 0.98262 1.22652 0.98456 0.86307 0.89051 0.90892 1.23055 0.98619 0.98710 0.98600 1.23125 0.99675 0.96449 1.00029 1.23520 0.94906 0.91126 0.93630 1.89002 1.83508 1.23223 1.32911 0.89073 0.89228 0.86602 0.90776 0.90540 0.94316 0.94676 0.92535 0.92217 0.93046 0.89406 0.90843 0.89647 0.90622 0.90348 0.92658 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.38 14.32 29.02 0.42 -2.97 16 2 C -0.15 -2.76 9.85 -36.02 -0.35 -3.11 16 3 C 0.15 2.87 5.88 -5.19 -0.03 2.84 16 4 N -0.59 -13.09 2.45 -176.43 -0.43 -13.52 16 5 C 0.24 5.65 4.99 -5.20 -0.03 5.62 16 6 C -0.53 -13.39 8.01 -34.44 -0.28 -13.67 16 7 H 0.06 1.59 7.50 -52.49 -0.39 1.19 16 8 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -24.11 13.29 55.43 0.74 -23.38 16 10 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 C 0.53 11.83 6.29 -10.98 -0.07 11.76 16 15 O -0.57 -13.77 15.91 5.56 0.09 -13.68 16 16 C -0.10 -2.01 1.90 -91.77 -0.17 -2.18 16 17 H 0.11 2.19 5.70 -51.93 -0.30 1.90 16 18 C -0.14 -2.47 8.94 37.16 0.33 -2.14 16 19 C 0.09 1.59 2.68 -26.16 -0.07 1.52 16 20 H 0.07 1.30 7.86 -51.93 -0.41 0.89 16 21 C -0.15 -2.00 6.01 -25.20 -0.15 -2.15 16 22 C -0.16 -1.81 7.16 -24.73 -0.18 -1.98 16 23 C 0.05 0.59 7.72 38.21 0.29 0.88 16 24 O -0.37 -6.65 10.89 -35.23 -0.38 -7.04 16 25 H 0.09 1.48 7.84 -52.48 -0.41 1.07 16 26 H 0.09 1.35 8.06 -52.48 -0.42 0.92 16 27 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 28 H 0.07 1.46 7.06 -51.93 -0.37 1.09 16 29 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16 30 H 0.04 0.97 5.88 -51.93 -0.31 0.66 16 31 H 0.04 0.88 7.86 -51.93 -0.41 0.47 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.06 0.90 6.51 -51.93 -0.34 0.56 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.09 1.78 6.41 -51.93 -0.33 1.44 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.13 6.51 -51.92 -0.34 0.79 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -29.31 332.90 -6.90 -36.21 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.52 Total: 5.19 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.38 Total: -3.97 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.30 Total: -36.90 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.30 Total: -20.72 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.31 -6.90 -36.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908341261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.211 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds