Wall clock time and date at job start Mon Mar 30 2020 05:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50707 * 119.99821 * 2 1 4 4 N 1.46501 * 109.46809 * 125.00583 * 3 2 1 5 5 C 1.46492 * 120.00457 * 87.44450 * 4 3 2 6 6 C 1.50704 * 109.47114 * 264.42277 * 5 4 3 7 7 H 1.08002 * 119.99634 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00366 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99728 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00480 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47597 * 179.97438 * 10 8 6 12 12 H 1.48500 * 109.47230 * 300.00383 * 10 8 6 13 13 H 1.48510 * 109.46871 * 59.99793 * 10 8 6 14 14 C 1.34783 * 119.99494 * 267.44040 * 4 3 2 15 15 O 1.21272 * 120.00224 * 4.23747 * 14 4 3 16 16 C 1.50703 * 119.99747 * 184.23952 * 14 4 3 17 17 H 1.09007 * 109.47050 * 22.12173 * 16 14 4 18 18 C 1.52998 * 109.47132 * 262.12214 * 16 14 4 19 19 C 1.52996 * 109.47097 * 142.12050 * 16 14 4 20 20 H 1.08999 * 109.87080 * 59.29719 * 19 16 14 21 21 C 1.54102 * 109.88030 * 180.30485 * 19 16 14 22 22 C 1.54806 * 104.18811 * 121.45293 * 21 19 16 23 23 C 1.54994 * 102.09242 * 20.88309 * 22 21 19 24 24 O 1.43743 * 109.88130 * 298.29115 * 19 16 14 25 25 H 1.08003 * 120.00575 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.99848 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.00575 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46648 * 5.00353 * 3 2 1 29 29 H 1.08996 * 109.47033 * 245.00417 * 3 2 1 30 30 H 1.09001 * 109.47600 * 144.42186 * 5 4 3 31 31 H 1.09006 * 109.46893 * 24.41748 * 5 4 3 32 32 H 0.96997 * 120.00478 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.47189 * 181.23948 * 18 16 14 34 34 H 1.09002 * 109.47088 * 301.24046 * 18 16 14 35 35 H 1.09007 * 109.46841 * 61.23812 * 18 16 14 36 36 H 1.08993 * 110.48978 * 240.13629 * 21 19 16 37 37 H 1.09009 * 110.48197 * 2.64689 * 21 19 16 38 38 H 1.09000 * 110.90980 * 139.08091 * 22 21 19 39 39 H 1.09006 * 110.90968 * 262.65065 * 22 21 19 40 40 H 1.09003 * 110.62044 * 81.47600 * 23 22 21 41 41 H 1.09006 * 110.61624 * 204.31564 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3407 0.7746 0.9855 6 6 4.3538 -0.6460 1.4884 7 1 3.4492 -1.0892 1.8781 8 6 5.5204 -1.3799 1.4510 9 7 6.6217 -0.8403 0.9760 10 14 5.5368 -3.1404 2.0750 11 1 6.9018 -3.7058 1.9260 12 1 5.1453 -3.1616 3.5073 13 1 4.5758 -3.9537 1.2872 14 6 2.6104 1.8693 2.3065 15 8 1.4718 2.2608 2.4515 16 6 3.5967 1.9837 3.4402 17 1 4.6114 1.9653 3.0423 18 6 3.4052 0.8103 4.4031 19 6 3.3654 3.2990 4.1866 20 1 2.3481 3.3297 4.5768 21 6 4.3746 3.4293 5.3439 22 6 5.1346 4.7429 5.0385 23 6 4.1489 5.4762 4.0936 24 8 3.5823 4.4091 3.2996 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3584 2.1316 0.0896 29 1 2.6211 1.4027 -0.9314 30 1 5.0456 1.3714 1.5644 31 1 4.6286 0.7905 -0.0657 32 1 7.4424 -1.3566 0.9494 33 1 4.1036 0.9048 5.2346 34 1 2.3839 0.8159 4.7841 35 1 3.5915 -0.1259 3.8767 36 1 3.8533 3.5030 6.2982 37 1 5.0602 2.5818 5.3493 38 1 5.3000 5.3175 5.9499 39 1 6.0786 4.5378 4.5335 40 1 3.3707 5.9802 4.6668 41 1 4.6805 6.1879 3.4618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908341261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:53 Heat of formation + Delta-G solvation = -86.249824 kcal Electronic energy + Delta-G solvation = -21651.020580 eV Core-core repulsion = 18530.576828 eV Total energy + Delta-G solvation = -3120.443753 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.31383 -39.87628 -37.06046 -35.45102 -34.57732 -33.74119 -32.73440 -29.39221 -28.81586 -27.47894 -25.18852 -24.78201 -23.14597 -21.69378 -20.82226 -19.78669 -18.51222 -18.31460 -17.50017 -16.94738 -16.56328 -16.52457 -15.94434 -15.91167 -15.14665 -14.67890 -14.46309 -14.28236 -14.24545 -14.03099 -13.51050 -13.28282 -13.17068 -12.82791 -12.71140 -12.59862 -12.51870 -12.30336 -12.23760 -12.01413 -12.00078 -11.80660 -11.57230 -11.42779 -10.74084 -10.59786 -10.50486 -10.19859 -9.45157 -8.16266 -6.28675 1.31879 1.43433 1.44767 1.51864 1.85321 2.37971 2.53580 2.94334 3.13972 3.64706 3.71369 3.94154 4.02171 4.07610 4.14965 4.27542 4.28292 4.44485 4.46021 4.51592 4.66149 4.74236 4.82840 4.84592 4.87302 4.88374 4.97337 5.04229 5.09592 5.16173 5.24424 5.34268 5.35848 5.68050 5.73719 5.80923 5.92622 6.03682 6.10535 6.59567 6.85561 7.34895 7.46358 8.89758 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.014595 B = 0.007710 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.064777 B = 3630.812963 C = 4807.361143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.172 4.172 3 C 0.142 3.858 4 N -0.599 5.599 5 C 0.253 3.747 6 C -0.529 4.529 7 H 0.054 0.946 8 C 0.024 3.976 9 N -0.920 5.920 10 Si 0.949 3.051 11 H -0.284 1.284 12 H -0.267 1.267 13 H -0.276 1.276 14 C 0.526 3.474 15 O -0.595 6.595 16 C -0.102 4.102 17 H 0.088 0.912 18 C -0.131 4.131 19 C 0.094 3.906 20 H 0.063 0.937 21 C -0.148 4.148 22 C -0.147 4.147 23 C 0.036 3.964 24 O -0.406 6.406 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.027 0.973 31 H 0.018 0.982 32 H 0.267 0.733 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 7.128 7.151 10.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.191 4.191 3 C 0.019 3.981 4 N -0.328 5.328 5 C 0.133 3.867 6 C -0.567 4.567 7 H 0.073 0.927 8 C -0.176 4.176 9 N -0.560 5.560 10 Si 0.775 3.225 11 H -0.209 1.209 12 H -0.192 1.192 13 H -0.201 1.201 14 C 0.316 3.684 15 O -0.478 6.478 16 C -0.123 4.123 17 H 0.106 0.894 18 C -0.188 4.188 19 C 0.036 3.964 20 H 0.081 0.919 21 C -0.185 4.185 22 C -0.185 4.185 23 C -0.040 4.040 24 O -0.326 6.326 25 H 0.117 0.883 26 H 0.131 0.869 27 H 0.119 0.881 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.559 7.302 6.931 10.678 hybrid contribution 0.321 -1.111 -0.057 1.158 sum -3.238 6.191 6.874 9.801 Atomic orbital electron populations 1.23903 0.95137 1.02403 0.99777 1.23283 0.96624 0.98634 1.00544 1.20519 0.92368 0.95801 0.89382 1.48239 1.15757 1.57551 1.11264 1.19131 0.77793 0.93125 0.96700 1.21510 0.95512 0.97965 1.41757 0.92749 1.25578 0.95008 1.01732 0.95281 1.70009 1.00849 1.38658 1.46438 0.85739 0.77096 0.80339 0.79342 1.20893 1.19173 1.20122 1.20745 0.88203 0.75465 0.83974 1.90521 1.21830 1.52587 1.82842 1.21404 0.99319 0.96739 0.94840 0.89416 1.21676 1.02224 0.96461 0.98485 1.22626 0.99145 0.84908 0.89694 0.91939 1.23062 0.97896 0.99529 0.98013 1.23121 0.98640 0.95731 1.00978 1.23819 0.95769 0.90399 0.94038 1.88958 1.84117 1.24659 1.34874 0.88290 0.86928 0.88127 0.90826 0.89708 0.95565 0.96367 0.92440 0.89200 0.92564 0.92068 0.88262 0.89789 0.87309 0.90922 0.91108 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.62 14.32 67.79 0.97 -4.65 16 2 C -0.17 -6.50 9.85 25.65 0.25 -6.25 16 3 C 0.14 5.69 5.88 85.64 0.50 6.19 16 4 N -0.60 -27.09 2.45 -830.50 -2.04 -29.13 16 5 C 0.25 12.46 4.99 85.64 0.43 12.89 16 6 C -0.53 -27.11 8.01 25.60 0.21 -26.90 16 7 H 0.05 2.84 7.50 -2.91 -0.02 2.82 16 8 C 0.02 1.25 5.46 84.65 0.46 1.72 16 9 N -0.92 -50.29 13.29 21.45 0.28 -50.00 16 10 Si 0.95 41.21 29.54 68.60 2.03 43.23 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 13 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 14 C 0.53 23.76 6.29 87.66 0.55 24.31 16 15 O -0.60 -28.95 15.91 -3.01 -0.05 -29.00 16 16 C -0.10 -3.97 1.90 -11.54 -0.02 -3.99 16 17 H 0.09 3.73 5.70 -2.38 -0.01 3.71 16 18 C -0.13 -4.60 8.94 71.98 0.64 -3.96 16 19 C 0.09 3.15 2.68 30.97 0.08 3.23 16 20 H 0.06 2.19 7.86 -2.39 -0.02 2.17 16 21 C -0.15 -3.54 6.01 31.58 0.19 -3.35 16 22 C -0.15 -3.05 7.16 31.89 0.23 -2.82 16 23 C 0.04 0.87 7.72 72.66 0.56 1.43 16 24 O -0.41 -14.65 10.89 -148.98 -1.62 -16.27 16 25 H 0.10 3.05 7.84 -2.91 -0.02 3.03 16 26 H 0.11 3.10 8.06 -2.91 -0.02 3.08 16 27 H 0.10 4.11 8.06 -2.91 -0.02 4.09 16 28 H 0.07 2.93 7.06 -2.39 -0.02 2.91 16 29 H 0.08 3.16 7.90 -2.39 -0.02 3.14 16 30 H 0.03 1.37 5.88 -2.39 -0.01 1.35 16 31 H 0.02 0.95 7.86 -2.38 -0.02 0.93 16 32 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 33 H 0.09 2.56 6.51 -2.39 -0.02 2.54 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 2.47 6.41 -2.38 -0.02 2.46 16 36 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 2.04 6.51 -2.38 -0.02 2.03 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -63.19 332.90 4.65 -58.53 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 1.00 Total: 24.78 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: 5.06 Total: -2.15 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -1.75 Total: -79.14 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -1.67 Total: -45.26 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -63.19 4.65 -58.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908341261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.716 kcal (2) G-P(sol) polarization free energy of solvation -63.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds