Wall clock time and date at job start Mon Mar 30 2020 05:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46680 * 2 1 4 4 C 1.50693 * 109.47230 * 119.99977 * 2 1 3 5 5 H 1.07998 * 120.00591 * 120.00375 * 4 2 1 6 6 C 1.37885 * 120.00094 * 300.00508 * 4 2 1 7 7 N 1.31513 * 120.00232 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99872 * 359.97438 * 6 4 2 9 9 H 1.48509 * 109.46902 * 90.00389 * 8 6 4 10 10 H 1.48492 * 109.47230 * 210.00060 * 8 6 4 11 11 H 1.48501 * 109.47240 * 330.00747 * 8 6 4 12 12 C 1.50697 * 109.47363 * 240.00087 * 2 1 3 13 13 O 1.21272 * 120.00101 * 274.94895 * 12 2 1 14 14 N 1.34779 * 119.99848 * 94.94550 * 12 2 1 15 15 C 1.48094 * 127.00615 * 354.89026 * 14 12 2 16 16 C 1.54895 * 103.23793 * 219.62097 * 15 14 12 17 17 C 1.54556 * 102.98288 * 322.52968 * 16 15 14 18 18 C 1.53003 * 112.74438 * 143.78361 * 17 16 15 19 19 O 1.42903 * 109.46907 * 61.78131 * 18 17 16 20 20 C 1.54339 * 108.60759 * 268.42038 * 17 16 15 21 21 C 1.55065 * 103.90907 * 87.22192 * 20 17 16 22 22 C 1.55045 * 102.10891 * 40.12515 * 21 20 17 23 23 C 1.47380 * 127.00826 * 174.86209 * 14 12 2 24 24 H 1.09008 * 111.75876 * 32.09381 * 23 14 12 25 25 H 1.09007 * 109.47365 * 65.20723 * 1 2 3 26 26 H 1.09002 * 109.47262 * 185.20428 * 1 2 3 27 27 H 1.08999 * 109.47639 * 305.20762 * 1 2 3 28 28 H 0.97002 * 120.00315 * 180.02562 * 7 6 4 29 29 H 1.08994 * 110.66314 * 338.05660 * 15 14 12 30 30 H 1.08997 * 110.66446 * 101.18206 * 15 14 12 31 31 H 1.09000 * 110.71850 * 204.15446 * 16 15 14 32 32 H 1.09005 * 110.71535 * 80.90586 * 16 15 14 33 33 H 1.09001 * 109.47214 * 181.78487 * 18 17 16 34 34 H 1.09000 * 109.47084 * 301.78476 * 18 17 16 35 35 H 0.96703 * 113.99453 * 179.97438 * 19 18 17 36 36 H 1.08999 * 110.54711 * 205.82769 * 20 17 16 37 37 H 1.09005 * 110.54018 * 328.47991 * 20 17 16 38 38 H 1.09002 * 110.89869 * 158.32962 * 21 20 17 39 39 H 1.08994 * 110.90444 * 281.88580 * 21 20 17 40 40 H 1.09000 * 110.53271 * 78.65092 * 22 21 20 41 41 H 1.09006 * 110.53251 * 201.26533 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 2.1371 -0.8596 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8023 0.8743 2.6993 10 1 0.9769 1.9953 3.9070 11 1 0.8488 2.1772 1.4922 12 6 2.0323 -0.7104 -1.2304 13 8 2.1491 -1.9174 -1.2285 14 7 2.3519 -0.0041 -2.3330 15 6 2.1720 1.4508 -2.5428 16 6 1.7017 1.5413 -4.0159 17 6 2.5316 0.4398 -4.7136 18 6 1.7512 -0.2806 -5.8149 19 8 1.3878 0.6556 -6.8316 20 6 3.8350 1.0698 -5.2487 21 6 4.8135 0.9774 -4.0493 22 6 4.4883 -0.4242 -3.4716 23 6 2.9520 -0.5223 -3.5754 24 1 2.6338 -1.5442 -3.7822 25 1 -0.3634 0.4310 -0.9330 26 1 -0.3634 -1.0234 0.0932 27 1 -0.3634 0.5925 0.8396 28 1 1.9024 -0.5285 4.4376 29 1 1.4098 1.8450 -1.8708 30 1 3.1160 1.9785 -2.4073 31 1 1.9319 2.5209 -4.4347 32 1 0.6355 1.3284 -4.0940 33 1 2.3731 -1.0641 -6.2479 34 1 0.8504 -0.7245 -5.3910 35 1 0.8896 0.2673 -7.5638 36 1 4.2150 0.5004 -6.0969 37 1 3.6695 2.1097 -5.5307 38 1 5.8486 1.0283 -4.3871 39 1 4.6063 1.7580 -3.3174 40 1 4.9624 -1.2032 -4.0686 41 1 4.8085 -0.4929 -2.4319 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924129096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:06 Heat of formation + Delta-G solvation = -83.150860 kcal Electronic energy + Delta-G solvation = -21816.255560 eV Core-core repulsion = 18695.946188 eV Total energy + Delta-G solvation = -3120.309372 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.72394 -38.10836 -36.49708 -33.97748 -33.57955 -31.48789 -31.14264 -29.00583 -27.31086 -25.17380 -24.61422 -23.21187 -21.97945 -20.69875 -18.84364 -18.41642 -17.32048 -16.88985 -16.36934 -15.90107 -15.08301 -14.98395 -14.71376 -14.13062 -13.81386 -13.51063 -13.29134 -12.82796 -12.72799 -12.45166 -12.25587 -12.05962 -11.89707 -11.48137 -11.38438 -11.18967 -10.94840 -10.85739 -10.76659 -10.60981 -10.55029 -10.32450 -10.26129 -10.02770 -9.65399 -9.15201 -8.68690 -8.57610 -8.14616 -6.07463 -4.07559 3.23886 3.30352 3.35772 3.48350 3.56110 3.92141 4.36791 4.46217 4.52816 4.73849 5.03295 5.08418 5.21912 5.22950 5.25586 5.33952 5.39236 5.47055 5.58292 5.66803 5.75195 5.80090 5.90504 5.92709 5.98686 6.02825 6.13148 6.18545 6.21579 6.34740 6.36343 6.40108 6.50110 6.66081 6.90898 7.18331 7.42936 7.57041 8.16166 8.51633 9.04514 9.09207 9.51215 11.05565 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029211 B = 0.005625 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.320482 B = 4976.569364 C = 5188.629615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.002 3.998 3 H 0.043 0.957 4 C -0.503 4.503 5 H 0.085 0.915 6 C 0.072 3.928 7 N -0.895 5.895 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.552 3.448 13 O -0.536 6.536 14 N -0.626 5.626 15 C 0.097 3.903 16 C -0.113 4.113 17 C -0.073 4.073 18 C 0.096 3.904 19 O -0.569 6.569 20 C -0.101 4.101 21 C -0.129 4.129 22 C -0.133 4.133 23 C 0.142 3.858 24 H 0.086 0.914 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.265 0.735 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.377 0.623 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.230 6.722 -19.869 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.019 4.019 3 H 0.061 0.939 4 C -0.541 4.541 5 H 0.103 0.897 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.192 1.192 12 C 0.344 3.656 13 O -0.411 6.411 14 N -0.362 5.362 15 C -0.026 4.026 16 C -0.152 4.152 17 C -0.074 4.074 18 C 0.019 3.981 19 O -0.374 6.374 20 C -0.139 4.139 21 C -0.166 4.166 22 C -0.172 4.172 23 C 0.037 3.963 24 H 0.104 0.896 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.223 0.777 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.582 6.382 -19.124 20.169 hybrid contribution -0.903 0.379 -0.104 0.984 sum -0.320 6.761 -19.228 20.384 Atomic orbital electron populations 1.22059 0.96995 1.01987 0.98856 1.19286 0.93372 0.97188 0.92073 0.93874 1.20807 1.32349 1.13625 0.87327 0.89694 1.24948 0.95733 0.96649 0.95655 1.69878 1.45387 1.40145 0.97886 0.86892 0.80826 0.83730 0.77027 1.20443 1.22229 1.19209 1.21050 0.75024 0.87250 0.82283 1.90579 1.53242 1.14723 1.82525 1.49082 1.64238 1.08532 1.14394 1.22584 1.01202 0.82660 0.96139 1.22706 0.99753 0.98280 0.94420 1.22066 0.96020 0.95783 0.93549 1.22052 0.97537 0.90453 0.88103 1.86471 1.77567 1.38428 1.34904 1.22408 0.93411 1.00697 0.97370 1.22702 0.98811 0.97553 0.97540 1.22772 0.95157 0.97091 1.02139 1.21964 0.92849 0.97611 0.83872 0.89624 0.94912 0.91957 0.93391 0.92498 0.89966 0.91052 0.90128 0.91078 0.93410 0.93407 0.77710 0.91662 0.91170 0.91614 0.90922 0.91196 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.58 37.16 0.32 -2.78 16 2 C 0.00 0.06 1.65 -92.93 -0.15 -0.09 16 3 H 0.04 0.99 6.01 -51.93 -0.31 0.68 16 4 C -0.50 -14.70 8.90 -34.44 -0.31 -15.00 16 5 H 0.09 2.82 7.50 -52.49 -0.39 2.42 16 6 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 7 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 8 Si 0.89 21.53 24.32 -169.99 -4.13 17.39 16 9 H -0.28 -6.58 6.92 56.52 0.39 -6.19 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.27 -6.01 6.53 56.52 0.37 -5.64 16 12 C 0.55 12.64 6.87 -10.99 -0.08 12.56 16 13 O -0.54 -14.19 16.44 5.56 0.09 -14.10 16 14 N -0.63 -11.16 2.85 -161.14 -0.46 -11.61 16 15 C 0.10 1.40 6.10 -2.17 -0.01 1.38 16 16 C -0.11 -1.36 5.93 -24.91 -0.15 -1.51 16 17 C -0.07 -0.86 0.81 -152.01 -0.12 -0.99 16 18 C 0.10 0.99 5.93 37.16 0.22 1.21 16 19 O -0.57 -5.36 13.22 -35.23 -0.47 -5.82 16 20 C -0.10 -1.06 5.58 -24.94 -0.14 -1.20 16 21 C -0.13 -1.44 6.44 -24.56 -0.16 -1.60 16 22 C -0.13 -1.82 6.42 -24.97 -0.16 -1.98 16 23 C 0.14 2.11 3.42 -65.79 -0.22 1.88 16 24 H 0.09 1.37 7.74 -51.92 -0.40 0.97 16 25 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 26 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.05 1.06 3.42 -51.93 -0.18 0.88 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.08 1.20 7.09 -51.93 -0.37 0.83 16 30 H 0.07 0.95 5.93 -51.93 -0.31 0.64 16 31 H 0.08 0.85 7.43 -51.93 -0.39 0.46 16 32 H 0.07 0.88 7.98 -51.93 -0.41 0.46 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.38 1.89 9.12 45.56 0.42 2.31 16 36 H 0.06 0.64 7.98 -51.93 -0.41 0.23 16 37 H 0.07 0.70 7.46 -51.93 -0.39 0.32 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.84 5.96 -51.93 -0.31 0.53 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.23 8.07 -51.93 -0.42 0.82 16 LS Contribution 312.27 15.07 4.71 4.71 Total: -1.00 -34.19 312.27 -6.14 -40.33 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.59 Total: 2.18 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.06 Total: -6.11 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.31 Total: -38.58 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.37 Total: -19.93 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.13 Total: 17.39 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.19 -6.14 -40.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924129096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.820 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds