Wall clock time and date at job start Mon Mar 30 2020 05:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46680 * 2 1 4 4 C 1.50693 * 109.47230 * 119.99977 * 2 1 3 5 5 H 1.07998 * 120.00591 * 120.00375 * 4 2 1 6 6 C 1.37885 * 120.00094 * 300.00508 * 4 2 1 7 7 N 1.31513 * 120.00232 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99872 * 359.97438 * 6 4 2 9 9 H 1.48509 * 109.46902 * 90.00389 * 8 6 4 10 10 H 1.48492 * 109.47230 * 210.00060 * 8 6 4 11 11 H 1.48501 * 109.47240 * 330.00747 * 8 6 4 12 12 C 1.50697 * 109.47363 * 240.00087 * 2 1 3 13 13 O 1.21272 * 120.00101 * 274.94895 * 12 2 1 14 14 N 1.34779 * 119.99848 * 94.94550 * 12 2 1 15 15 C 1.48094 * 127.00615 * 354.89026 * 14 12 2 16 16 C 1.54895 * 103.23793 * 219.62097 * 15 14 12 17 17 C 1.54556 * 102.98288 * 322.52968 * 16 15 14 18 18 C 1.53003 * 112.74438 * 143.78361 * 17 16 15 19 19 O 1.42903 * 109.46907 * 61.78131 * 18 17 16 20 20 C 1.54339 * 108.60759 * 268.42038 * 17 16 15 21 21 C 1.55065 * 103.90907 * 87.22192 * 20 17 16 22 22 C 1.55045 * 102.10891 * 40.12515 * 21 20 17 23 23 C 1.47380 * 127.00826 * 174.86209 * 14 12 2 24 24 H 1.09008 * 111.75876 * 32.09381 * 23 14 12 25 25 H 1.09007 * 109.47365 * 65.20723 * 1 2 3 26 26 H 1.09002 * 109.47262 * 185.20428 * 1 2 3 27 27 H 1.08999 * 109.47639 * 305.20762 * 1 2 3 28 28 H 0.97002 * 120.00315 * 180.02562 * 7 6 4 29 29 H 1.08994 * 110.66314 * 338.05660 * 15 14 12 30 30 H 1.08997 * 110.66446 * 101.18206 * 15 14 12 31 31 H 1.09000 * 110.71850 * 204.15446 * 16 15 14 32 32 H 1.09005 * 110.71535 * 80.90586 * 16 15 14 33 33 H 1.09001 * 109.47214 * 181.78487 * 18 17 16 34 34 H 1.09000 * 109.47084 * 301.78476 * 18 17 16 35 35 H 0.96703 * 113.99453 * 179.97438 * 19 18 17 36 36 H 1.08999 * 110.54711 * 205.82769 * 20 17 16 37 37 H 1.09005 * 110.54018 * 328.47991 * 20 17 16 38 38 H 1.09002 * 110.89869 * 158.32962 * 21 20 17 39 39 H 1.08994 * 110.90444 * 281.88580 * 21 20 17 40 40 H 1.09000 * 110.53271 * 78.65092 * 22 21 20 41 41 H 1.09006 * 110.53251 * 201.26533 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 2.1371 -0.8596 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8023 0.8743 2.6993 10 1 0.9769 1.9953 3.9070 11 1 0.8488 2.1772 1.4922 12 6 2.0323 -0.7104 -1.2304 13 8 2.1491 -1.9174 -1.2285 14 7 2.3519 -0.0041 -2.3330 15 6 2.1720 1.4508 -2.5428 16 6 1.7017 1.5413 -4.0159 17 6 2.5316 0.4398 -4.7136 18 6 1.7512 -0.2806 -5.8149 19 8 1.3878 0.6556 -6.8316 20 6 3.8350 1.0698 -5.2487 21 6 4.8135 0.9774 -4.0493 22 6 4.4883 -0.4242 -3.4716 23 6 2.9520 -0.5223 -3.5754 24 1 2.6338 -1.5442 -3.7822 25 1 -0.3634 0.4310 -0.9330 26 1 -0.3634 -1.0234 0.0932 27 1 -0.3634 0.5925 0.8396 28 1 1.9024 -0.5285 4.4376 29 1 1.4098 1.8450 -1.8708 30 1 3.1160 1.9785 -2.4073 31 1 1.9319 2.5209 -4.4347 32 1 0.6355 1.3284 -4.0940 33 1 2.3731 -1.0641 -6.2479 34 1 0.8504 -0.7245 -5.3910 35 1 0.8896 0.2673 -7.5638 36 1 4.2150 0.5004 -6.0969 37 1 3.6695 2.1097 -5.5307 38 1 5.8486 1.0283 -4.3871 39 1 4.6063 1.7580 -3.3174 40 1 4.9624 -1.2032 -4.0686 41 1 4.8085 -0.4929 -2.4319 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924129096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:06 Heat of formation + Delta-G solvation = -109.639384 kcal Electronic energy + Delta-G solvation = -21817.404188 eV Core-core repulsion = 18695.946188 eV Total energy + Delta-G solvation = -3121.458000 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.92053 -39.71677 -37.31568 -35.86740 -35.01582 -33.25202 -32.52359 -30.00012 -28.51770 -27.24040 -25.64907 -24.68146 -23.33294 -21.83414 -19.91585 -19.87556 -18.90678 -18.17672 -17.68808 -17.49339 -16.77862 -16.02689 -15.85678 -15.55784 -15.42412 -14.85718 -14.57110 -14.31383 -14.16765 -13.91762 -13.51344 -13.47491 -13.21504 -12.90265 -12.71869 -12.59914 -12.38743 -12.23456 -12.11469 -11.88809 -11.80794 -11.51434 -11.42502 -11.32740 -11.20925 -10.81654 -10.79092 -10.47148 -9.59381 -8.32149 -6.40374 1.31313 1.36788 1.48634 1.78023 2.06946 2.30927 3.01586 3.05586 3.50778 3.55342 3.80447 3.98230 4.06726 4.12390 4.30203 4.31920 4.36181 4.42442 4.45474 4.52839 4.60964 4.67184 4.68469 4.72582 4.77129 4.85890 4.89024 4.94320 5.08921 5.13509 5.15837 5.24165 5.35939 5.37246 5.44450 5.48270 5.58697 6.20896 6.56403 6.73790 6.93768 7.20189 7.38976 8.85681 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029211 B = 0.005625 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.320482 B = 4976.569364 C = 5188.629615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.002 3.998 3 H 0.064 0.936 4 C -0.519 4.519 5 H 0.019 0.981 6 C 0.011 3.989 7 N -0.949 5.949 8 Si 0.958 3.042 9 H -0.263 1.263 10 H -0.293 1.293 11 H -0.228 1.228 12 C 0.547 3.453 13 O -0.591 6.591 14 N -0.621 5.621 15 C 0.086 3.914 16 C -0.104 4.104 17 C -0.068 4.068 18 C 0.101 3.899 19 O -0.575 6.575 20 C -0.091 4.091 21 C -0.121 4.121 22 C -0.135 4.135 23 C 0.131 3.869 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.269 0.731 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.397 0.603 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 10.318 -22.706 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 H 0.082 0.918 4 C -0.558 4.558 5 H 0.038 0.962 6 C -0.186 4.186 7 N -0.589 5.589 8 Si 0.782 3.218 9 H -0.188 1.188 10 H -0.221 1.221 11 H -0.151 1.151 12 C 0.338 3.662 13 O -0.471 6.471 14 N -0.355 5.355 15 C -0.035 4.035 16 C -0.142 4.142 17 C -0.069 4.069 18 C 0.023 3.977 19 O -0.383 6.383 20 C -0.129 4.129 21 C -0.158 4.158 22 C -0.174 4.174 23 C 0.027 3.973 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.246 0.754 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.542 10.019 -22.046 24.221 hybrid contribution -0.446 -0.847 0.731 1.205 sum -0.988 9.171 -21.315 23.225 Atomic orbital electron populations 1.21956 0.94854 1.01334 1.01232 1.19208 0.95076 0.97244 0.90450 0.91843 1.20922 1.32104 1.12332 0.90397 0.96210 1.25999 0.97232 1.00787 0.94618 1.70063 1.47349 1.42697 0.98775 0.85729 0.78731 0.79023 0.78343 1.18844 1.22068 1.15149 1.20824 0.75258 0.86641 0.83469 1.90544 1.55931 1.16951 1.83670 1.48970 1.62375 1.10315 1.13815 1.22946 1.02328 0.80078 0.98181 1.22696 0.99604 0.99503 0.92369 1.22039 0.97193 0.94865 0.92782 1.21894 0.97178 0.90521 0.88094 1.86403 1.78039 1.38504 1.35378 1.22377 0.91906 1.01605 0.96982 1.22676 1.00272 0.95156 0.97732 1.22756 0.94381 0.99808 1.00405 1.22230 0.93520 0.97702 0.83846 0.91619 0.90736 0.93970 0.92901 0.92181 0.89612 0.89606 0.87531 0.91156 0.92392 0.94295 0.75373 0.90590 0.89571 0.89827 0.91141 0.89939 0.94278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 8.58 71.98 0.62 -5.12 16 2 C 0.00 0.09 1.65 -12.29 -0.02 0.07 16 3 H 0.06 2.79 6.01 -2.39 -0.01 2.78 16 4 C -0.52 -31.86 8.90 25.60 0.23 -31.63 16 5 H 0.02 1.42 7.50 -2.91 -0.02 1.40 16 6 C 0.01 0.63 5.45 84.66 0.46 1.10 16 7 N -0.95 -61.39 13.96 21.45 0.30 -61.09 16 8 Si 0.96 43.52 24.32 68.60 1.67 45.19 16 9 H -0.26 -11.31 6.92 99.48 0.69 -10.62 16 10 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.23 -8.93 6.53 99.48 0.65 -8.28 16 12 C 0.55 25.77 6.87 87.66 0.60 26.38 16 13 O -0.59 -33.44 16.44 -3.00 -0.05 -33.49 16 14 N -0.62 -21.87 2.85 -782.12 -2.23 -24.10 16 15 C 0.09 2.23 6.10 86.72 0.53 2.76 16 16 C -0.10 -2.08 5.93 31.77 0.19 -1.89 16 17 C -0.07 -1.40 0.81 -50.57 -0.04 -1.44 16 18 C 0.10 1.79 5.93 71.98 0.43 2.22 16 19 O -0.58 -8.55 13.22 -148.98 -1.97 -10.52 16 20 C -0.09 -1.54 5.58 31.76 0.18 -1.36 16 21 C -0.12 -2.37 6.44 32.00 0.21 -2.17 16 22 C -0.13 -3.65 6.42 31.73 0.20 -3.45 16 23 C 0.13 3.83 3.42 45.90 0.16 3.98 16 24 H 0.07 2.16 7.74 -2.38 -0.02 2.15 16 25 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 2.16 3.42 -2.39 -0.01 2.15 16 28 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 29 H 0.09 2.17 7.09 -2.39 -0.02 2.15 16 30 H 0.09 2.01 5.93 -2.39 -0.01 1.99 16 31 H 0.11 1.67 7.43 -2.39 -0.02 1.65 16 32 H 0.07 1.46 7.98 -2.38 -0.02 1.44 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.40 2.50 9.12 -74.06 -0.68 1.82 16 36 H 0.08 1.17 7.98 -2.39 -0.02 1.15 16 37 H 0.09 1.26 7.46 -2.38 -0.02 1.25 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.42 5.96 -2.39 -0.01 1.41 16 40 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.04 1.33 8.07 -2.38 -0.02 1.31 16 Total: -1.00 -80.50 312.27 1.74 -78.76 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.28 Total: 15.80 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 3.74 Total: -10.56 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -1.93 Total: -85.18 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -2.02 Total: -44.01 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.67 Total: 45.19 kcal Total: -80.50 1.74 -78.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924129096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.879 kcal (2) G-P(sol) polarization free energy of solvation -80.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds