Wall clock time and date at job start Mon Mar 30 2020 05:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 120.00142 * 2 1 4 4 C 1.53002 * 109.47460 * 125.00101 * 3 2 1 5 5 O 1.42904 * 109.44590 * 65.02960 * 4 3 2 6 6 C 1.53039 * 109.46349 * 185.00064 * 4 3 2 7 7 C 1.53189 * 109.31116 * 181.38432 * 6 4 3 8 8 N 1.46919 * 108.77568 * 305.36128 * 7 6 4 9 9 C 1.34781 * 120.63429 * 233.63182 * 8 7 6 10 10 O 1.21278 * 119.99448 * 355.28331 * 9 8 7 11 11 C 1.50697 * 120.00014 * 175.28565 * 9 8 7 12 12 H 1.08996 * 109.47435 * 35.25251 * 11 9 8 13 13 C 1.53002 * 109.47112 * 275.24972 * 11 9 8 14 14 C 1.50705 * 109.46810 * 155.25242 * 11 9 8 15 15 H 1.07996 * 120.00297 * 0.02562 * 14 11 9 16 16 C 1.37884 * 119.99673 * 179.97438 * 14 11 9 17 17 N 1.31507 * 119.99997 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99739 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.46619 * 90.00472 * 18 16 14 20 20 H 1.48494 * 109.47014 * 210.00425 * 18 16 14 21 21 H 1.48493 * 109.47395 * 330.00804 * 18 16 14 22 22 C 1.46928 * 118.73818 * 53.61476 * 8 7 6 23 23 C 1.53046 * 109.45433 * 305.06906 * 4 3 2 24 24 H 1.08002 * 120.00087 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.00294 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00203 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47128 * 4.99870 * 3 2 1 28 28 H 1.08999 * 109.46936 * 244.99586 * 3 2 1 29 29 H 0.96696 * 114.00229 * 299.96621 * 5 4 3 30 30 H 1.08999 * 109.49572 * 61.43192 * 6 4 3 31 31 H 1.09003 * 109.49201 * 301.33623 * 6 4 3 32 32 H 1.08998 * 109.59062 * 65.15380 * 7 6 4 33 33 H 1.09004 * 109.58228 * 185.58030 * 7 6 4 34 34 H 1.08996 * 109.47235 * 304.89649 * 13 11 9 35 35 H 1.09004 * 109.46401 * 64.89248 * 13 11 9 36 36 H 1.08995 * 109.47231 * 184.88977 * 13 11 9 37 37 H 0.97005 * 119.99995 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.58851 * 186.60139 * 22 8 7 39 39 H 1.08995 * 109.58952 * 66.17826 * 22 8 7 40 40 H 1.08993 * 109.49748 * 298.56339 * 23 4 3 41 41 H 1.09004 * 109.49818 * 58.66598 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 8 4.0298 0.3226 1.0037 6 6 3.7092 2.7050 1.2550 7 6 4.7064 2.7179 2.4178 8 7 4.0046 2.3240 3.6470 9 6 4.0533 3.1034 4.7455 10 8 4.7493 4.0966 4.7538 11 6 3.2431 2.7407 5.9633 12 1 3.2066 1.6562 6.0656 13 6 1.8219 3.2868 5.8115 14 6 3.8832 3.3397 7.1891 15 1 4.7861 3.9249 7.0956 16 6 3.3154 3.1415 8.4299 17 7 2.2157 2.4294 8.5436 18 14 4.1092 3.8834 9.9494 19 1 3.5526 5.2397 10.1864 20 1 3.8291 3.0209 11.1253 21 1 5.5767 3.9796 9.7444 22 6 3.2483 1.0644 3.6559 23 6 2.2673 1.0700 2.4792 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 3.6735 -0.5746 0.9487 30 1 2.9533 3.4737 1.4154 31 1 4.2364 2.9017 0.3214 32 1 5.5128 2.0130 2.2155 33 1 5.1162 3.7210 2.5366 34 1 1.8631 4.3594 5.6223 35 1 1.3289 2.7892 4.9763 36 1 1.2614 3.1006 6.7275 37 1 1.8165 2.2897 9.4166 38 1 2.6960 0.9763 4.5915 39 1 3.9357 0.2246 3.5546 40 1 1.5250 1.8540 2.6280 41 1 1.7683 0.1029 2.4169 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924440441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:27 Heat of formation + Delta-G solvation = -75.725407 kcal Electronic energy + Delta-G solvation = -21463.998457 eV Core-core repulsion = 18344.011077 eV Total energy + Delta-G solvation = -3119.987380 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.04307 -38.25664 -35.16892 -34.35030 -33.80634 -31.74889 -30.81680 -30.04707 -27.54626 -25.15508 -23.88456 -23.19568 -21.89189 -20.26993 -19.84464 -18.35925 -16.60941 -16.40520 -16.05709 -15.45268 -15.17653 -14.85785 -14.44655 -14.27896 -13.95071 -13.44517 -13.18172 -12.92883 -12.86174 -12.53440 -12.10550 -11.78984 -11.64057 -11.43298 -11.38174 -11.10529 -11.05048 -10.94939 -10.61185 -10.59009 -10.27542 -10.26711 -10.06750 -9.96500 -9.37728 -8.94578 -8.54262 -8.24171 -7.95863 -6.01660 -4.04802 2.04354 3.35069 3.40529 3.46894 3.73566 3.77151 4.17839 4.48311 4.50480 4.75037 4.78021 4.94361 5.05020 5.28479 5.31290 5.40567 5.53979 5.57879 5.68391 5.70521 5.77639 5.87216 5.96588 5.99937 6.10754 6.21216 6.35311 6.38520 6.46292 6.52404 6.67223 6.88765 7.00998 7.20295 7.46848 7.60914 7.79116 8.01771 8.16553 8.43894 9.01518 9.28697 9.60082 11.05490 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.031138 B = 0.004854 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.011899 B = 5766.839170 C = 6271.633003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C -0.120 4.120 4 C 0.141 3.859 5 O -0.553 6.553 6 C -0.118 4.118 7 C 0.116 3.884 8 N -0.624 5.624 9 C 0.523 3.477 10 O -0.550 6.550 11 C 0.031 3.969 12 H 0.047 0.953 13 C -0.130 4.130 14 C -0.498 4.498 15 H 0.069 0.931 16 C 0.059 3.941 17 N -0.896 5.896 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.114 3.886 23 C -0.157 4.157 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.370 0.630 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.029 0.971 35 H 0.012 0.988 36 H 0.095 0.905 37 H 0.261 0.739 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.543 -6.726 -16.733 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.174 4.174 3 C -0.158 4.158 4 C 0.101 3.899 5 O -0.359 6.359 6 C -0.156 4.156 7 C -0.007 4.007 8 N -0.360 5.360 9 C 0.315 3.685 10 O -0.426 6.426 11 C 0.010 3.990 12 H 0.065 0.935 13 C -0.188 4.188 14 C -0.536 4.536 15 H 0.087 0.913 16 C -0.142 4.142 17 N -0.536 5.536 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.010 4.010 23 C -0.196 4.196 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.218 0.782 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.049 0.951 35 H 0.031 0.969 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.879 -5.707 -16.544 17.736 hybrid contribution -0.216 -0.270 0.665 0.749 sum -3.096 -5.977 -15.880 17.247 Atomic orbital electron populations 1.23863 0.95912 1.01934 1.00971 1.22836 0.96120 0.98270 1.00123 1.21489 0.98755 0.96070 0.99474 1.21115 0.87308 0.89040 0.92482 1.86565 1.35538 1.17981 1.95794 1.21909 0.99756 0.94427 0.99526 1.21301 0.94156 1.01713 0.83550 1.48310 1.52382 1.22920 1.12395 1.22002 0.80932 0.81644 0.83968 1.90512 1.41543 1.27884 1.82666 1.18884 0.92503 0.98224 0.89416 0.93480 1.21698 0.97455 0.98264 1.01349 1.21112 1.10551 1.32145 0.89837 0.91285 1.24931 0.95033 0.95218 0.98997 1.69859 1.19706 1.39987 1.24029 0.86459 0.79913 0.78967 0.81929 1.20630 1.21282 1.19796 1.21618 0.93858 0.86345 0.99161 1.22613 0.98788 1.02866 0.95320 0.88545 0.88501 0.87438 0.90587 0.90276 0.78240 0.90476 0.90688 0.91738 0.89646 0.95139 0.96892 0.88632 0.92961 0.88406 0.91911 0.90599 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.51 14.32 29.02 0.42 -1.10 16 2 C -0.16 -1.26 7.57 -36.02 -0.27 -1.53 16 3 C -0.12 -1.10 4.96 -27.88 -0.14 -1.24 16 4 C 0.14 1.58 0.73 -90.57 -0.07 1.51 16 5 O -0.55 -6.17 11.70 -35.23 -0.41 -6.58 16 6 C -0.12 -1.52 5.11 -26.61 -0.14 -1.65 16 7 C 0.12 1.90 6.18 -3.72 -0.02 1.88 16 8 N -0.62 -11.79 2.97 -172.77 -0.51 -12.31 16 9 C 0.52 12.48 6.80 -10.98 -0.07 12.41 16 10 O -0.55 -14.88 15.24 5.56 0.08 -14.80 16 11 C 0.03 0.78 1.80 -92.92 -0.17 0.61 16 12 H 0.05 1.21 6.28 -51.93 -0.33 0.88 16 13 C -0.13 -3.09 8.92 37.16 0.33 -2.76 16 14 C -0.50 -14.34 8.33 -34.44 -0.29 -14.63 16 15 H 0.07 2.10 7.02 -52.49 -0.37 1.73 16 16 C 0.06 1.64 5.29 -17.82 -0.09 1.55 16 17 N -0.90 -25.17 11.29 55.43 0.63 -24.54 16 18 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.11 1.79 6.02 -3.71 -0.02 1.76 16 23 C -0.16 -1.94 4.79 -26.61 -0.13 -2.07 16 24 H 0.10 0.76 7.84 -52.49 -0.41 0.35 16 25 H 0.10 0.67 8.06 -52.48 -0.42 0.25 16 26 H 0.11 0.73 7.22 -52.49 -0.38 0.35 16 27 H 0.08 0.70 7.79 -51.93 -0.40 0.29 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.37 2.90 7.75 45.56 0.35 3.25 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.04 7.81 -51.93 -0.41 0.63 16 33 H 0.09 1.54 7.03 -51.93 -0.37 1.17 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.01 0.25 7.86 -51.93 -0.41 -0.16 16 36 H 0.10 2.48 5.95 -51.93 -0.31 2.17 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.10 1.69 5.15 -51.93 -0.27 1.43 16 39 H 0.06 0.93 7.81 -51.93 -0.41 0.52 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.79 7.02 -51.93 -0.36 0.42 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -31.91 322.52 -6.77 -38.69 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.73 Total: 2.99 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.66 Total: -5.26 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.11 Total: -36.85 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.33 Total: -21.38 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.91 -6.77 -38.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924440441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.039 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds