Wall clock time and date at job start Mon Mar 30 2020 05:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 120.00142 * 2 1 4 4 C 1.53002 * 109.47460 * 125.00101 * 3 2 1 5 5 O 1.42904 * 109.44590 * 65.02960 * 4 3 2 6 6 C 1.53039 * 109.46349 * 185.00064 * 4 3 2 7 7 C 1.53189 * 109.31116 * 181.38432 * 6 4 3 8 8 N 1.46919 * 108.77568 * 305.36128 * 7 6 4 9 9 C 1.34781 * 120.63429 * 233.63182 * 8 7 6 10 10 O 1.21278 * 119.99448 * 355.28331 * 9 8 7 11 11 C 1.50697 * 120.00014 * 175.28565 * 9 8 7 12 12 H 1.08996 * 109.47435 * 35.25251 * 11 9 8 13 13 C 1.53002 * 109.47112 * 275.24972 * 11 9 8 14 14 C 1.50705 * 109.46810 * 155.25242 * 11 9 8 15 15 H 1.07996 * 120.00297 * 0.02562 * 14 11 9 16 16 C 1.37884 * 119.99673 * 179.97438 * 14 11 9 17 17 N 1.31507 * 119.99997 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99739 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.46619 * 90.00472 * 18 16 14 20 20 H 1.48494 * 109.47014 * 210.00425 * 18 16 14 21 21 H 1.48493 * 109.47395 * 330.00804 * 18 16 14 22 22 C 1.46928 * 118.73818 * 53.61476 * 8 7 6 23 23 C 1.53046 * 109.45433 * 305.06906 * 4 3 2 24 24 H 1.08002 * 120.00087 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.00294 * 179.97438 * 1 2 3 26 26 H 1.08000 * 120.00203 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47128 * 4.99870 * 3 2 1 28 28 H 1.08999 * 109.46936 * 244.99586 * 3 2 1 29 29 H 0.96696 * 114.00229 * 299.96621 * 5 4 3 30 30 H 1.08999 * 109.49572 * 61.43192 * 6 4 3 31 31 H 1.09003 * 109.49201 * 301.33623 * 6 4 3 32 32 H 1.08998 * 109.59062 * 65.15380 * 7 6 4 33 33 H 1.09004 * 109.58228 * 185.58030 * 7 6 4 34 34 H 1.08996 * 109.47235 * 304.89649 * 13 11 9 35 35 H 1.09004 * 109.46401 * 64.89248 * 13 11 9 36 36 H 1.08995 * 109.47231 * 184.88977 * 13 11 9 37 37 H 0.97005 * 119.99995 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.58851 * 186.60139 * 22 8 7 39 39 H 1.08995 * 109.58952 * 66.17826 * 22 8 7 40 40 H 1.08993 * 109.49748 * 298.56339 * 23 4 3 41 41 H 1.09004 * 109.49818 * 58.66598 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 8 4.0298 0.3226 1.0037 6 6 3.7092 2.7050 1.2550 7 6 4.7064 2.7179 2.4178 8 7 4.0046 2.3240 3.6470 9 6 4.0533 3.1034 4.7455 10 8 4.7493 4.0966 4.7538 11 6 3.2431 2.7407 5.9633 12 1 3.2066 1.6562 6.0656 13 6 1.8219 3.2868 5.8115 14 6 3.8832 3.3397 7.1891 15 1 4.7861 3.9249 7.0956 16 6 3.3154 3.1415 8.4299 17 7 2.2157 2.4294 8.5436 18 14 4.1092 3.8834 9.9494 19 1 3.5526 5.2397 10.1864 20 1 3.8291 3.0209 11.1253 21 1 5.5767 3.9796 9.7444 22 6 3.2483 1.0644 3.6559 23 6 2.2673 1.0700 2.4792 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 3.6735 -0.5746 0.9487 30 1 2.9533 3.4737 1.4154 31 1 4.2364 2.9017 0.3214 32 1 5.5128 2.0130 2.2155 33 1 5.1162 3.7210 2.5366 34 1 1.8631 4.3594 5.6223 35 1 1.3289 2.7892 4.9763 36 1 1.2614 3.1006 6.7275 37 1 1.8165 2.2897 9.4166 38 1 2.6960 0.9763 4.5915 39 1 3.9357 0.2246 3.5546 40 1 1.5250 1.8540 2.6280 41 1 1.7683 0.1029 2.4169 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924440441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:27 Heat of formation + Delta-G solvation = -97.115300 kcal Electronic energy + Delta-G solvation = -21464.925992 eV Core-core repulsion = 18344.011077 eV Total energy + Delta-G solvation = -3120.914915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36679 -39.68716 -36.54172 -35.86532 -35.05749 -33.20507 -32.08068 -31.69929 -28.54849 -27.27760 -25.30861 -24.39941 -23.45041 -21.48487 -20.48162 -19.86716 -18.44223 -17.85738 -17.42812 -16.98933 -16.31789 -16.13792 -16.07432 -15.59915 -14.94529 -14.80655 -14.74157 -14.42558 -13.95577 -13.77113 -13.57793 -13.20337 -12.99211 -12.81801 -12.78306 -12.63948 -12.56679 -12.27002 -12.19856 -12.12552 -12.03764 -11.99639 -11.19392 -11.11747 -10.93999 -10.60111 -10.21704 -10.05241 -9.48855 -8.16192 -6.27010 1.40007 1.40930 1.45349 1.52342 1.89877 2.20964 2.46204 3.12709 3.32827 3.66313 3.74268 3.89417 4.04544 4.16365 4.29110 4.34148 4.40832 4.51335 4.62340 4.66556 4.76649 4.80698 4.85223 4.89174 4.92214 5.01164 5.03095 5.09657 5.11666 5.17504 5.35971 5.43225 5.67633 5.74499 5.80267 5.93430 5.94963 6.19551 6.60684 6.79110 6.93541 7.37522 7.49502 8.89344 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.031138 B = 0.004854 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.011899 B = 5766.839170 C = 6271.633003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 C -0.112 4.112 4 C 0.149 3.851 5 O -0.564 6.564 6 C -0.114 4.114 7 C 0.114 3.886 8 N -0.615 5.615 9 C 0.518 3.482 10 O -0.594 6.594 11 C 0.030 3.970 12 H 0.044 0.956 13 C -0.115 4.115 14 C -0.530 4.530 15 H 0.041 0.959 16 C 0.023 3.977 17 N -0.908 5.908 18 Si 0.955 3.045 19 H -0.276 1.276 20 H -0.271 1.271 21 H -0.279 1.279 22 C 0.107 3.893 23 C -0.149 4.149 24 H 0.093 0.907 25 H 0.107 0.893 26 H 0.124 0.876 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.387 0.613 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.016 0.984 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.266 0.734 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 -8.167 -18.036 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.179 4.179 3 C -0.150 4.150 4 C 0.109 3.891 5 O -0.372 6.372 6 C -0.152 4.152 7 C -0.009 4.009 8 N -0.349 5.349 9 C 0.310 3.690 10 O -0.475 6.475 11 C 0.009 3.991 12 H 0.062 0.938 13 C -0.173 4.173 14 C -0.569 4.569 15 H 0.059 0.941 16 C -0.177 4.177 17 N -0.547 5.547 18 Si 0.781 3.219 19 H -0.201 1.201 20 H -0.196 1.196 21 H -0.204 1.204 22 C -0.015 4.015 23 C -0.187 4.187 24 H 0.112 0.888 25 H 0.125 0.875 26 H 0.142 0.858 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.237 0.763 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.751 -7.208 -17.886 19.645 hybrid contribution 0.051 0.106 1.026 1.033 sum -3.701 -7.101 -16.860 18.665 Atomic orbital electron populations 1.24009 0.96092 1.02403 1.00474 1.22908 0.96167 0.98320 1.00475 1.21375 0.98253 0.96842 0.98505 1.20949 0.87341 0.88118 0.92727 1.86534 1.35840 1.19075 1.95745 1.21891 0.98985 0.95890 0.98474 1.21446 0.95284 1.00527 0.83627 1.48273 1.51781 1.22991 1.11814 1.21706 0.80646 0.81744 0.84938 1.90480 1.43410 1.29940 1.83628 1.18797 0.93304 0.97640 0.89406 0.93841 1.21501 0.96636 0.97604 1.01600 1.21235 1.10456 1.33146 0.92030 0.94081 1.25562 0.95494 0.95404 1.01206 1.69923 1.19975 1.39884 1.24921 0.85602 0.78628 0.78610 0.79087 1.20122 1.19599 1.20404 1.21828 0.94524 0.85020 1.00122 1.22572 0.97761 1.04087 0.94292 0.88845 0.87455 0.85796 0.90697 0.89615 0.76314 0.90780 0.88657 0.91154 0.91869 0.96462 0.93643 0.90559 0.92439 0.90162 0.90540 0.91421 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 14.32 67.79 0.97 -1.51 16 2 C -0.16 -2.03 7.57 25.66 0.19 -1.83 16 3 C -0.11 -1.68 4.96 29.85 0.15 -1.53 16 4 C 0.15 2.91 0.73 -10.76 -0.01 2.90 16 5 O -0.56 -10.69 11.70 -148.98 -1.74 -12.43 16 6 C -0.11 -2.73 5.11 30.67 0.16 -2.57 16 7 C 0.11 3.68 6.18 86.36 0.53 4.21 16 8 N -0.62 -23.20 2.97 -818.92 -2.43 -25.63 16 9 C 0.52 25.44 6.80 87.66 0.60 26.04 16 10 O -0.59 -33.56 15.24 -3.02 -0.05 -33.61 16 11 C 0.03 1.54 1.80 -12.28 -0.02 1.52 16 12 H 0.04 2.27 6.28 -2.39 -0.02 2.26 16 13 C -0.12 -5.56 8.92 71.98 0.64 -4.92 16 14 C -0.53 -31.49 8.33 25.60 0.21 -31.28 16 15 H 0.04 2.62 7.02 -2.91 -0.02 2.60 16 16 C 0.02 1.29 5.29 84.66 0.45 1.73 16 17 N -0.91 -51.00 11.29 21.45 0.24 -50.76 16 18 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 22 C 0.11 3.23 6.02 86.36 0.52 3.75 16 23 C -0.15 -3.29 4.79 30.68 0.15 -3.14 16 24 H 0.09 1.24 7.84 -2.91 -0.02 1.22 16 25 H 0.11 1.15 8.06 -2.91 -0.02 1.13 16 26 H 0.12 1.15 7.22 -2.91 -0.02 1.13 16 27 H 0.07 1.16 7.79 -2.39 -0.02 1.14 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.39 4.52 7.75 -74.06 -0.57 3.94 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 2.20 7.81 -2.39 -0.02 2.18 16 33 H 0.06 2.33 7.03 -2.39 -0.02 2.31 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.04 1.83 7.86 -2.38 -0.02 1.81 16 36 H 0.08 3.98 5.95 -2.39 -0.01 3.97 16 37 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 38 H 0.08 2.72 5.15 -2.39 -0.01 2.71 16 39 H 0.08 2.12 7.81 -2.39 -0.02 2.10 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.10 1.75 7.02 -2.38 -0.02 1.74 16 Total: -1.00 -70.04 322.52 3.03 -67.02 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.44 Total: 14.69 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 4.54 Total: -6.63 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -2.19 Total: -76.39 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -1.79 Total: -46.04 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -70.04 3.03 -67.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924440441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.098 kcal (2) G-P(sol) polarization free energy of solvation -70.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds