Wall clock time and date at job start Mon Mar 30 2020 04:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 120.00244 * 2 1 4 4 N 1.46907 * 109.47439 * 235.92062 * 3 2 1 5 5 C 1.46905 * 110.99671 * 62.28795 * 4 3 2 6 6 C 1.50708 * 109.46962 * 75.41330 * 5 4 3 7 7 H 1.08001 * 119.99766 * 355.71425 * 6 5 4 8 8 C 1.37876 * 120.00002 * 175.71730 * 6 5 4 9 9 N 1.31511 * 119.99765 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99955 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47273 * 59.99762 * 10 8 6 12 12 H 1.48497 * 109.47123 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47434 * 300.00054 * 10 8 6 14 14 C 1.46896 * 110.99975 * 298.33972 * 4 3 2 15 15 C 1.53005 * 109.47057 * 293.94842 * 14 4 3 16 16 H 1.09008 * 110.52162 * 59.29985 * 15 14 4 17 17 C 1.55055 * 110.58902 * 182.10204 * 15 14 4 18 18 C 1.55007 * 102.12536 * 155.10509 * 17 15 14 19 19 C 1.53388 * 103.82425 * 339.14962 * 18 17 15 20 20 C 1.53249 * 115.08936 * 227.51061 * 19 18 17 21 21 O 1.44331 * 85.28030 * 221.67143 * 20 19 18 22 22 C 1.44331 * 93.46264 * 23.64150 * 21 20 19 23 23 O 1.43059 * 108.31435 * 358.46578 * 19 18 17 24 24 H 1.07997 * 119.99965 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.99957 * 180.02562 * 1 2 3 26 26 H 1.08007 * 120.00012 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47040 * 355.92284 * 3 2 1 28 28 H 1.09005 * 109.47392 * 115.92253 * 3 2 1 29 29 H 1.08999 * 109.47166 * 195.41140 * 5 4 3 30 30 H 1.08995 * 109.47286 * 315.41956 * 5 4 3 31 31 H 0.97004 * 119.99777 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.47249 * 53.94650 * 14 4 3 33 33 H 1.08995 * 109.47134 * 173.95398 * 14 4 3 34 34 H 1.09001 * 110.87452 * 273.26813 * 17 15 14 35 35 H 1.09000 * 110.87107 * 36.74090 * 17 15 14 36 36 H 1.09005 * 110.55356 * 97.72947 * 18 17 15 37 37 H 1.08997 * 110.55933 * 220.41346 * 18 17 15 38 38 H 1.09007 * 113.90222 * 335.76165 * 20 19 18 39 39 H 1.09004 * 113.90655 * 107.58019 * 20 19 18 40 40 H 1.08993 * 113.90271 * 222.28049 * 22 21 20 41 41 H 1.08996 * 113.90535 * 90.44012 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9805 1.3411 -1.1472 5 6 2.2406 1.2766 -2.4147 6 6 1.5975 2.6116 -2.6894 7 1 1.6674 3.4049 -1.9600 8 6 0.9200 2.8200 -3.8720 9 7 0.8354 1.8541 -4.7604 10 14 0.1235 4.4749 -4.2128 11 1 1.1626 5.5358 -4.2028 12 1 -0.5368 4.4420 -5.5425 13 1 -0.8879 4.7629 -3.1644 14 6 3.9733 0.2618 -1.0616 15 6 4.8865 0.5031 0.1420 16 1 4.3043 0.5360 1.0630 17 6 5.9789 -0.5941 0.2263 18 6 7.1062 0.1280 1.0075 19 6 6.7944 1.6167 0.8085 20 6 7.9906 2.4818 0.3971 21 8 7.4619 3.4467 1.3312 22 6 6.7521 2.4487 2.0950 23 8 5.6389 1.7261 -0.0278 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3574 2.1322 -0.0731 28 1 2.6343 1.3951 0.9243 29 1 2.9278 1.0308 -3.2243 30 1 1.4697 0.5091 -2.3467 31 1 0.3584 2.0006 -5.5922 32 1 3.4621 -0.6936 -0.9440 33 1 4.5706 0.2445 -1.9732 34 1 5.6169 -1.4609 0.7793 35 1 6.3159 -0.8838 -0.7690 36 1 7.0668 -0.1331 2.0651 37 1 8.0815 -0.1203 0.5892 38 1 8.9560 2.0679 0.6884 39 1 7.9613 2.8106 -0.6418 40 1 5.7482 2.7516 2.3923 41 1 7.3323 2.0246 2.9145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930540753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:30 Heat of formation + Delta-G solvation = -21.532811 kcal Electronic energy + Delta-G solvation = -21168.675396 eV Core-core repulsion = 18051.037983 eV Total energy + Delta-G solvation = -3117.637412 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.01265 -38.30546 -36.77170 -32.80832 -32.33740 -32.10731 -30.16038 -27.47821 -26.71344 -26.40583 -24.64144 -22.72676 -21.12097 -20.82297 -19.89254 -18.75532 -16.81971 -16.53758 -16.22369 -15.93684 -15.40435 -14.90033 -14.76437 -14.26875 -13.98288 -13.84836 -13.57901 -13.45584 -12.84967 -12.42285 -12.15919 -12.07372 -11.69848 -11.42528 -11.18122 -11.05998 -10.92958 -10.71015 -10.65942 -10.46716 -10.40565 -10.34447 -9.84029 -9.77962 -9.48047 -9.14869 -8.76227 -8.33414 -7.15248 -5.94300 -3.94090 2.82427 3.39343 3.39755 3.42711 3.46979 3.89992 4.18543 4.46383 4.54376 4.67221 4.81478 5.04656 5.13281 5.24422 5.37532 5.40524 5.45217 5.47478 5.49235 5.58020 5.62120 5.65659 5.71632 5.86205 5.94546 5.95849 6.07902 6.09457 6.17297 6.36459 6.39597 6.65902 7.10151 7.12094 7.27991 7.32997 7.43556 7.89175 8.17381 8.27508 8.61860 9.12579 9.68941 11.16424 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.005267 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.881087 B = 5314.793206 C = 6024.762420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.184 4.184 3 C 0.087 3.913 4 N -0.519 5.519 5 C 0.191 3.809 6 C -0.498 4.498 7 H 0.061 0.939 8 C 0.054 3.946 9 N -0.902 5.902 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.058 3.942 15 C 0.082 3.918 16 H 0.069 0.931 17 C -0.152 4.152 18 C -0.147 4.147 19 C 0.037 3.963 20 C 0.043 3.957 21 O -0.374 6.374 22 C 0.021 3.979 23 O -0.311 6.311 24 H 0.098 0.902 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.027 0.973 30 H -0.001 1.001 31 H 0.260 0.740 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.117 -6.590 13.266 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.204 4.204 3 C -0.041 4.041 4 N -0.241 5.241 5 C 0.066 3.934 6 C -0.537 4.537 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.542 5.542 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.204 1.204 14 C -0.071 4.071 15 C 0.024 3.976 16 H 0.086 0.914 17 C -0.190 4.190 18 C -0.185 4.185 19 C -0.005 4.005 20 C -0.034 4.034 21 O -0.292 6.292 22 C -0.056 4.056 23 O -0.229 6.229 24 H 0.116 0.884 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.017 0.983 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.269 -5.689 12.948 18.084 hybrid contribution -0.916 -0.399 -0.268 1.034 sum 10.353 -6.088 12.680 17.466 Atomic orbital electron populations 1.23728 0.96057 1.01205 1.00807 1.23622 0.96775 0.99950 1.00029 1.21315 0.94684 0.94173 0.93970 1.62398 1.15337 1.42288 1.04100 1.19778 0.92104 0.97067 0.84418 1.21106 1.31896 0.98135 1.02537 0.92073 1.24953 0.96707 0.96839 0.96120 1.69947 1.43238 1.32248 1.08743 0.86594 0.79482 0.84387 0.77142 1.20188 1.21469 1.20371 1.22123 0.94238 0.93845 0.96871 1.23374 0.92338 0.82763 0.99134 0.91357 1.23215 0.95664 0.98655 1.01440 1.22883 1.00047 0.94227 1.01308 1.24535 0.89454 0.94731 0.91741 1.24184 0.95198 0.87566 0.96407 1.89741 1.68130 1.27464 1.43871 1.24513 0.98251 0.88153 0.94706 1.89112 1.33028 1.38000 1.62781 0.88411 0.89647 0.88617 0.89834 0.92113 0.95451 0.98334 0.93043 0.94088 0.90597 0.90321 0.90153 0.90372 0.90093 0.89352 0.88169 0.88573 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 14.29 29.02 0.41 -2.66 16 2 C -0.18 -3.22 7.47 -36.03 -0.27 -3.49 16 3 C 0.09 1.67 5.48 -4.97 -0.03 1.64 16 4 N -0.52 -11.29 4.59 -237.51 -1.09 -12.38 16 5 C 0.19 5.02 4.63 -4.97 -0.02 5.00 16 6 C -0.50 -14.30 8.70 -34.44 -0.30 -14.60 16 7 H 0.06 1.76 7.60 -52.49 -0.40 1.37 16 8 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 10 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.06 1.03 4.51 -3.82 -0.02 1.01 16 15 C 0.08 1.20 3.18 -25.64 -0.08 1.12 16 16 H 0.07 0.97 6.56 -51.92 -0.34 0.63 16 17 C -0.15 -1.65 6.60 -24.58 -0.16 -1.82 16 18 C -0.15 -1.40 6.48 -25.47 -0.16 -1.56 16 19 C 0.04 0.47 1.57 -90.15 -0.14 0.33 16 20 C 0.04 0.52 8.63 37.25 0.32 0.84 16 21 O -0.37 -5.59 12.46 -42.37 -0.53 -6.11 16 22 C 0.02 0.25 8.63 37.26 0.32 0.57 16 23 O -0.31 -5.30 10.96 -42.37 -0.46 -5.77 16 24 H 0.10 1.72 7.84 -52.49 -0.41 1.31 16 25 H 0.09 1.29 8.06 -52.49 -0.42 0.86 16 26 H 0.10 1.54 6.72 -52.48 -0.35 1.18 16 27 H 0.08 1.77 7.06 -51.93 -0.37 1.40 16 28 H 0.06 1.04 6.40 -51.93 -0.33 0.70 16 29 H 0.03 0.78 7.74 -51.93 -0.40 0.38 16 30 H 0.00 -0.03 6.71 -51.93 -0.35 -0.38 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.04 0.68 6.22 -51.93 -0.32 0.36 16 33 H 0.08 1.42 7.83 -51.93 -0.41 1.02 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.88 8.05 -51.93 -0.42 0.47 16 36 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 37 H 0.08 0.65 7.94 -51.93 -0.41 0.23 16 38 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 LS Contribution 329.29 15.07 4.96 4.96 Total: -1.00 -32.53 329.29 -8.22 -40.74 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.59 Total: -0.06 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -0.23 Total: -12.15 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: -0.35 Total: -38.85 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.99 Total: -11.88 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.53 -8.22 -40.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930540753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.211 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds