Wall clock time and date at job start Mon Mar 30 2020 04:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 120.00244 * 2 1 4 4 N 1.46907 * 109.47439 * 235.92062 * 3 2 1 5 5 C 1.46905 * 110.99671 * 62.28795 * 4 3 2 6 6 C 1.50708 * 109.46962 * 75.41330 * 5 4 3 7 7 H 1.08001 * 119.99766 * 355.71425 * 6 5 4 8 8 C 1.37876 * 120.00002 * 175.71730 * 6 5 4 9 9 N 1.31511 * 119.99765 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99955 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47273 * 59.99762 * 10 8 6 12 12 H 1.48497 * 109.47123 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47434 * 300.00054 * 10 8 6 14 14 C 1.46896 * 110.99975 * 298.33972 * 4 3 2 15 15 C 1.53005 * 109.47057 * 293.94842 * 14 4 3 16 16 H 1.09008 * 110.52162 * 59.29985 * 15 14 4 17 17 C 1.55055 * 110.58902 * 182.10204 * 15 14 4 18 18 C 1.55007 * 102.12536 * 155.10509 * 17 15 14 19 19 C 1.53388 * 103.82425 * 339.14962 * 18 17 15 20 20 C 1.53249 * 115.08936 * 227.51061 * 19 18 17 21 21 O 1.44331 * 85.28030 * 221.67143 * 20 19 18 22 22 C 1.44331 * 93.46264 * 23.64150 * 21 20 19 23 23 O 1.43059 * 108.31435 * 358.46578 * 19 18 17 24 24 H 1.07997 * 119.99965 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.99957 * 180.02562 * 1 2 3 26 26 H 1.08007 * 120.00012 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47040 * 355.92284 * 3 2 1 28 28 H 1.09005 * 109.47392 * 115.92253 * 3 2 1 29 29 H 1.08999 * 109.47166 * 195.41140 * 5 4 3 30 30 H 1.08995 * 109.47286 * 315.41956 * 5 4 3 31 31 H 0.97004 * 119.99777 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.47249 * 53.94650 * 14 4 3 33 33 H 1.08995 * 109.47134 * 173.95398 * 14 4 3 34 34 H 1.09001 * 110.87452 * 273.26813 * 17 15 14 35 35 H 1.09000 * 110.87107 * 36.74090 * 17 15 14 36 36 H 1.09005 * 110.55356 * 97.72947 * 18 17 15 37 37 H 1.08997 * 110.55933 * 220.41346 * 18 17 15 38 38 H 1.09007 * 113.90222 * 335.76165 * 20 19 18 39 39 H 1.09004 * 113.90655 * 107.58019 * 20 19 18 40 40 H 1.08993 * 113.90271 * 222.28049 * 22 21 20 41 41 H 1.08996 * 113.90535 * 90.44012 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9805 1.3411 -1.1472 5 6 2.2406 1.2766 -2.4147 6 6 1.5975 2.6116 -2.6894 7 1 1.6674 3.4049 -1.9600 8 6 0.9200 2.8200 -3.8720 9 7 0.8354 1.8541 -4.7604 10 14 0.1235 4.4749 -4.2128 11 1 1.1626 5.5358 -4.2028 12 1 -0.5368 4.4420 -5.5425 13 1 -0.8879 4.7629 -3.1644 14 6 3.9733 0.2618 -1.0616 15 6 4.8865 0.5031 0.1420 16 1 4.3043 0.5360 1.0630 17 6 5.9789 -0.5941 0.2263 18 6 7.1062 0.1280 1.0075 19 6 6.7944 1.6167 0.8085 20 6 7.9906 2.4818 0.3971 21 8 7.4619 3.4467 1.3312 22 6 6.7521 2.4487 2.0950 23 8 5.6389 1.7261 -0.0278 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3574 2.1322 -0.0731 28 1 2.6343 1.3951 0.9243 29 1 2.9278 1.0308 -3.2243 30 1 1.4697 0.5091 -2.3467 31 1 0.3584 2.0006 -5.5922 32 1 3.4621 -0.6936 -0.9440 33 1 4.5706 0.2445 -1.9732 34 1 5.6169 -1.4609 0.7793 35 1 6.3159 -0.8838 -0.7690 36 1 7.0668 -0.1331 2.0651 37 1 8.0815 -0.1203 0.5892 38 1 8.9560 2.0679 0.6884 39 1 7.9613 2.8106 -0.6418 40 1 5.7482 2.7516 2.3923 41 1 7.3323 2.0246 2.9145 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930540753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:30 Heat of formation + Delta-G solvation = -44.811553 kcal Electronic energy + Delta-G solvation = -21169.684838 eV Core-core repulsion = 18051.037983 eV Total energy + Delta-G solvation = -3118.646854 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.98686 -39.61150 -38.16724 -34.87273 -33.81410 -33.13819 -31.49093 -29.20932 -27.82470 -27.61025 -26.28933 -24.08185 -22.51291 -22.21377 -20.85204 -20.23172 -18.38041 -17.87568 -17.50480 -17.10413 -16.65274 -16.53803 -16.15222 -15.91630 -15.40296 -15.13445 -14.57208 -14.46220 -14.40549 -14.07450 -13.49262 -13.14617 -13.10134 -12.96855 -12.66292 -12.56044 -12.51440 -12.34237 -12.28618 -12.05177 -11.77932 -11.49072 -11.28334 -11.18924 -10.80246 -10.59440 -10.51004 -10.18328 -8.87987 -8.17280 -6.25998 1.38421 1.41501 1.43148 1.49750 2.40602 2.45179 2.94229 3.13878 3.29975 3.34127 3.72183 3.78794 3.99844 4.05218 4.16221 4.22657 4.32498 4.43814 4.46914 4.50834 4.56302 4.65564 4.66788 4.78060 4.91222 4.95199 4.96456 5.04455 5.09382 5.11863 5.19409 5.21247 5.25087 5.32369 5.66217 5.70044 5.89822 6.08147 6.15378 6.45015 6.68278 6.88406 7.42233 8.92512 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.005267 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.881087 B = 5314.793206 C = 6024.762420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.191 4.191 3 C 0.091 3.909 4 N -0.536 5.536 5 C 0.210 3.790 6 C -0.517 4.517 7 H 0.052 0.948 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.274 1.274 12 H -0.280 1.280 13 H -0.268 1.268 14 C 0.059 3.941 15 C 0.083 3.917 16 H 0.075 0.925 17 C -0.145 4.145 18 C -0.135 4.135 19 C 0.025 3.975 20 C 0.042 3.958 21 O -0.413 6.413 22 C 0.023 3.977 23 O -0.358 6.358 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.056 0.944 28 H 0.084 0.916 29 H -0.006 1.006 30 H -0.018 1.018 31 H 0.263 0.737 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.034 -7.577 15.064 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.211 4.211 3 C -0.037 4.037 4 N -0.258 5.258 5 C 0.084 3.916 6 C -0.555 4.555 7 H 0.071 0.929 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.199 1.199 12 H -0.205 1.205 13 H -0.192 1.192 14 C -0.070 4.070 15 C 0.026 3.974 16 H 0.093 0.907 17 C -0.183 4.183 18 C -0.172 4.172 19 C -0.016 4.016 20 C -0.034 4.034 21 O -0.333 6.333 22 C -0.053 4.053 23 O -0.277 6.277 24 H 0.104 0.896 25 H 0.128 0.872 26 H 0.134 0.866 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.012 0.988 30 H -0.001 1.001 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.146 0.854 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.197 -6.687 14.771 20.290 hybrid contribution -1.176 -0.080 -0.814 1.432 sum 11.021 -6.767 13.957 19.028 Atomic orbital electron populations 1.23901 0.96119 1.01889 0.99919 1.23612 0.96990 0.99701 1.00749 1.21237 0.94303 0.94378 0.93784 1.62255 1.15869 1.44805 1.02907 1.19359 0.90969 0.95409 0.85872 1.21398 1.32422 0.98969 1.02711 0.92936 1.25805 0.97133 1.00617 0.95821 1.70063 1.43913 1.34270 1.09167 0.85546 0.78637 0.79639 0.77455 1.19943 1.20529 1.19246 1.22180 0.93612 0.93267 0.97908 1.23354 0.92939 0.83905 0.97226 0.90686 1.23199 0.94759 0.98227 1.02089 1.22890 1.00297 0.91122 1.02901 1.24742 0.88189 0.97219 0.91451 1.24416 0.96835 0.86877 0.95287 1.89697 1.68915 1.29603 1.45059 1.24708 0.98117 0.87198 0.95296 1.89059 1.34954 1.39366 1.64344 0.89590 0.87173 0.86606 0.92576 0.89779 0.98781 1.00080 0.92796 0.92649 0.92639 0.87710 0.90621 0.87633 0.88003 0.85360 0.90020 0.89948 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.03 14.29 67.79 0.97 -5.06 16 2 C -0.19 -6.56 7.47 25.65 0.19 -6.37 16 3 C 0.09 3.52 5.48 85.55 0.47 3.99 16 4 N -0.54 -24.01 4.59 -905.34 -4.15 -28.17 16 5 C 0.21 11.50 4.63 85.56 0.40 11.90 16 6 C -0.52 -30.66 8.70 25.60 0.22 -30.43 16 7 H 0.05 3.13 7.60 -2.91 -0.02 3.11 16 8 C 0.00 0.23 5.46 84.65 0.46 0.69 16 9 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 10 Si 0.96 46.25 29.54 68.60 2.03 48.27 16 11 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 14 C 0.06 2.10 4.51 86.31 0.39 2.49 16 15 C 0.08 2.35 3.18 31.30 0.10 2.45 16 16 H 0.08 1.99 6.56 -2.38 -0.02 1.97 16 17 C -0.14 -2.74 6.60 31.98 0.21 -2.53 16 18 C -0.13 -2.03 6.48 31.41 0.20 -1.83 16 19 C 0.02 0.58 1.57 -10.49 -0.02 0.57 16 20 C 0.04 0.96 8.63 72.04 0.62 1.58 16 21 O -0.41 -12.08 12.46 -142.15 -1.77 -13.85 16 22 C 0.02 0.51 8.63 72.05 0.62 1.13 16 23 O -0.36 -12.19 10.96 -142.15 -1.56 -13.75 16 24 H 0.09 3.05 7.84 -2.91 -0.02 3.03 16 25 H 0.11 3.11 8.06 -2.91 -0.02 3.09 16 26 H 0.12 3.50 6.72 -2.91 -0.02 3.48 16 27 H 0.06 2.45 7.06 -2.39 -0.02 2.44 16 28 H 0.08 2.83 6.40 -2.38 -0.02 2.81 16 29 H -0.01 -0.36 7.74 -2.39 -0.02 -0.38 16 30 H -0.02 -1.05 6.71 -2.39 -0.02 -1.07 16 31 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.06 1.80 6.22 -2.39 -0.01 1.79 16 33 H 0.06 2.17 7.83 -2.39 -0.02 2.16 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.51 8.05 -2.39 -0.02 1.49 16 36 H 0.11 1.06 7.89 -2.38 -0.02 1.04 16 37 H 0.10 1.15 7.94 -2.39 -0.02 1.13 16 38 H 0.13 1.82 8.10 -2.38 -0.02 1.80 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.12 1.69 8.06 -2.39 -0.02 1.67 16 Total: -1.00 -73.42 329.29 0.66 -72.76 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.99 Total: 13.38 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 4.84 Total: -21.43 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -3.87 Total: -85.39 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -3.33 Total: -27.60 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -73.42 0.66 -72.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930540753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.949 kcal (2) G-P(sol) polarization free energy of solvation -73.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds