Wall clock time and date at job start Mon Mar 30 2020 04:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 120.00109 * 2 1 4 4 N 1.46901 * 109.47155 * 125.39107 * 3 2 1 5 5 C 1.46896 * 110.99709 * 171.96834 * 4 3 2 6 6 C 1.50700 * 109.47239 * 295.03246 * 5 4 3 7 7 H 1.08006 * 119.99762 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00153 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00378 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00019 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47256 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47619 * 119.99458 * 10 8 6 13 13 H 1.48506 * 109.46915 * 239.99273 * 10 8 6 14 14 C 1.46901 * 110.99860 * 295.92161 * 4 3 2 15 15 C 1.52999 * 109.47038 * 163.54667 * 14 4 3 16 16 H 1.09002 * 110.35819 * 309.35913 * 15 14 4 17 17 C 1.54941 * 110.40340 * 187.02986 * 15 14 4 18 18 C 1.55055 * 101.20069 * 203.28601 * 17 15 14 19 19 H 1.08995 * 113.23038 * 155.68387 * 18 17 15 20 20 C 1.53989 * 108.68723 * 282.35182 * 18 17 15 21 21 O 1.43857 * 107.06607 * 102.85236 * 20 18 17 22 22 C 1.44410 * 106.48873 * 29.82993 * 21 20 18 23 23 C 1.54914 * 103.57404 * 318.47294 * 22 21 20 24 24 H 1.09001 * 112.43762 * 156.81553 * 23 22 21 25 25 O 1.43144 * 108.85808 * 282.48671 * 23 22 21 26 26 H 1.08001 * 120.00133 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99746 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99746 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46890 * 245.39116 * 3 2 1 30 30 H 1.09003 * 109.46985 * 5.38909 * 3 2 1 31 31 H 1.09004 * 109.47412 * 55.03492 * 5 4 3 32 32 H 1.09007 * 109.47326 * 175.03404 * 5 4 3 33 33 H 0.96998 * 120.00791 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.46867 * 283.54050 * 14 4 3 35 35 H 1.08999 * 109.47481 * 43.54581 * 14 4 3 36 36 H 1.09000 * 111.07813 * 321.26711 * 17 15 14 37 37 H 1.09004 * 111.07567 * 85.26766 * 17 15 14 38 38 H 1.09004 * 109.91310 * 222.20587 * 20 18 17 39 39 H 1.08997 * 109.91642 * 343.29860 * 20 18 17 40 40 H 1.09002 * 110.60714 * 76.99437 * 22 21 20 41 41 H 1.09004 * 110.60381 * 199.79621 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0031 1.3281 1.1291 5 6 3.8881 2.4981 1.0536 6 6 4.7632 2.3880 -0.1683 7 1 4.6713 1.5341 -0.8232 8 6 5.6818 3.3770 -0.4498 9 7 5.7940 4.4166 0.3479 10 14 6.7659 3.2409 -1.9648 11 1 6.4458 1.9861 -2.6916 12 1 6.5219 4.4046 -2.8544 13 1 8.1926 3.2236 -1.5527 14 6 2.2865 1.2917 2.4110 15 6 3.2588 0.9072 3.5279 16 1 3.8120 0.0081 3.2563 17 6 2.4946 0.6900 4.8582 18 6 3.6224 0.9269 5.8956 19 1 3.2502 1.2359 6.8723 20 6 4.5099 -0.3301 5.9553 21 8 5.7099 -0.0351 5.2186 22 6 5.9306 1.3863 5.3470 23 6 4.5128 1.9901 5.1888 24 1 4.4271 2.9761 5.6457 25 8 4.1624 1.9909 3.8009 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 2.6158 1.4057 -0.9343 30 1 1.3592 2.1313 0.0965 31 1 3.2869 3.4050 0.9895 32 1 4.5133 2.5389 1.9457 33 1 6.4400 5.1125 0.1497 34 1 1.8645 2.2749 2.6192 35 1 1.4843 0.5557 2.3581 36 1 1.6949 1.4214 4.9748 37 1 2.1063 -0.3263 4.9258 38 1 4.7576 -0.5608 6.9914 39 1 3.9900 -1.1736 5.5013 40 1 6.3413 1.6237 6.3283 41 1 6.5927 1.7444 4.5586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930541189.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:39 Heat of formation + Delta-G solvation = -56.282347 kcal Electronic energy + Delta-G solvation = -21550.543851 eV Core-core repulsion = 18431.399586 eV Total energy + Delta-G solvation = -3119.144265 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.58815 -37.43741 -36.13092 -33.14838 -32.51312 -32.10560 -30.22285 -28.17091 -26.79466 -25.76735 -23.70522 -22.54380 -20.98284 -20.58891 -20.05985 -19.20268 -17.02886 -16.38187 -16.04815 -15.45658 -15.19317 -14.87744 -14.71899 -14.15306 -13.67430 -13.59300 -13.52377 -13.31712 -12.61157 -12.33718 -11.94889 -11.75229 -11.44997 -11.35672 -11.20875 -11.00703 -10.81637 -10.80851 -10.71883 -10.68158 -10.45162 -10.15728 -9.74194 -9.69263 -9.15525 -8.89078 -8.78646 -8.27531 -7.16104 -5.89436 -3.89255 2.65187 3.37631 3.44862 3.49808 3.97373 4.06242 4.39058 4.51829 4.77177 4.82638 5.00026 5.08130 5.28444 5.37331 5.45663 5.47152 5.53206 5.60746 5.61738 5.68990 5.73984 5.80960 5.86447 5.97799 6.03333 6.08386 6.13138 6.24058 6.44808 6.58008 6.63611 6.96386 7.00603 7.07671 7.47871 7.55245 7.63792 7.92839 8.32297 8.39877 8.69086 9.19050 9.72908 11.21131 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.007299 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.488968 B = 3834.982483 C = 5346.275147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.122 4.122 3 C 0.082 3.918 4 N -0.530 5.530 5 C 0.186 3.814 6 C -0.505 4.505 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.058 3.942 15 C 0.093 3.907 16 H 0.079 0.921 17 C -0.145 4.145 18 C -0.158 4.158 19 H 0.103 0.897 20 C 0.051 3.949 21 O -0.368 6.368 22 C 0.029 3.971 23 C 0.048 3.952 24 H 0.104 0.896 25 O -0.336 6.336 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.023 0.977 31 H -0.016 1.016 32 H 0.067 0.933 33 H 0.258 0.742 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.373 -7.413 11.348 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.141 4.141 3 C -0.046 4.046 4 N -0.255 5.255 5 C 0.062 3.938 6 C -0.544 4.544 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.720 3.280 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.211 1.211 14 C -0.071 4.071 15 C 0.036 3.964 16 H 0.097 0.903 17 C -0.183 4.183 18 C -0.177 4.177 19 H 0.121 0.879 20 C -0.026 4.026 21 O -0.287 6.287 22 C -0.047 4.047 23 C -0.010 4.010 24 H 0.122 0.878 25 O -0.255 6.255 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.041 0.959 31 H 0.002 0.998 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.753 -7.670 11.051 15.051 hybrid contribution -0.080 0.779 -0.397 0.878 sum -6.833 -6.891 10.654 14.411 Atomic orbital electron populations 1.23713 0.96002 1.01013 1.05189 1.23213 0.95365 0.99679 0.95809 1.21191 0.93847 0.92191 0.97334 1.62153 1.18190 1.46238 0.98879 1.20009 0.90713 0.83932 0.99148 1.21249 1.18818 1.05738 1.08577 0.92132 1.24947 0.97339 0.95449 0.96790 1.69989 1.36055 1.10086 1.37374 0.86537 0.80524 0.77799 0.83107 1.19769 1.21288 1.21111 1.22149 0.94718 0.99454 0.90772 1.23038 0.89675 0.90943 0.92792 0.90269 1.23342 0.97655 1.02557 0.94722 1.24001 0.97050 0.96522 1.00123 0.87907 1.23210 0.86127 0.97042 0.96247 1.89000 1.42551 1.23869 1.73256 1.24082 0.97923 0.81015 1.01729 1.24159 0.93604 0.98462 0.84806 0.87812 1.88776 1.64873 1.50406 1.21442 0.89149 0.89173 0.87348 0.88708 0.95873 0.99831 0.91518 0.93256 0.95232 0.90946 0.90483 0.90057 0.92749 0.89558 0.92073 0.87479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.06 14.31 29.01 0.42 -2.64 16 2 C -0.12 -1.98 8.33 -36.03 -0.30 -2.28 16 3 C 0.08 1.64 5.25 -4.97 -0.03 1.61 16 4 N -0.53 -11.75 4.46 -237.51 -1.06 -12.81 16 5 C 0.19 5.02 4.49 -4.98 -0.02 5.00 16 6 C -0.51 -14.61 8.39 -34.44 -0.29 -14.90 16 7 H 0.06 1.74 7.08 -52.48 -0.37 1.37 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 10 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 14 C 0.06 1.07 4.69 -3.82 -0.02 1.06 16 15 C 0.09 1.62 3.04 -25.71 -0.08 1.54 16 16 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 17 C -0.14 -1.82 5.90 -24.62 -0.15 -1.96 16 18 C -0.16 -1.87 4.31 -87.61 -0.38 -2.25 16 19 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 20 C 0.05 0.62 6.79 37.67 0.26 0.88 16 21 O -0.37 -5.97 11.38 -36.19 -0.41 -6.38 16 22 C 0.03 0.44 7.33 38.17 0.28 0.72 16 23 C 0.05 0.73 4.73 -24.31 -0.11 0.61 16 24 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 25 O -0.34 -6.68 7.91 -36.19 -0.29 -6.97 16 26 H 0.09 1.06 8.06 -52.49 -0.42 0.64 16 27 H 0.09 1.22 7.84 -52.49 -0.41 0.81 16 28 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.09 2.08 6.60 -51.93 -0.34 1.74 16 30 H 0.02 0.46 7.79 -51.93 -0.40 0.06 16 31 H -0.02 -0.47 8.13 -51.93 -0.42 -0.90 16 32 H 0.07 1.93 5.19 -51.92 -0.27 1.66 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.03 0.58 8.05 -51.93 -0.42 0.16 16 35 H 0.07 1.17 6.79 -51.93 -0.35 0.82 16 36 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 37 H 0.08 0.86 7.70 -51.93 -0.40 0.46 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.99 7.41 -51.93 -0.38 0.61 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -32.19 324.74 -8.37 -40.57 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -6.71 Total: 1.10 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -0.52 Total: -11.09 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.32 Total: -39.35 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.70 Total: -13.35 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.19 -8.37 -40.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930541189.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.714 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds