Wall clock time and date at job start Mon Mar 30 2020 04:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 120.00109 * 2 1 4 4 N 1.46901 * 109.47155 * 125.39107 * 3 2 1 5 5 C 1.46896 * 110.99709 * 171.96834 * 4 3 2 6 6 C 1.50700 * 109.47239 * 295.03246 * 5 4 3 7 7 H 1.08006 * 119.99762 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00153 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00378 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00019 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47256 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47619 * 119.99458 * 10 8 6 13 13 H 1.48506 * 109.46915 * 239.99273 * 10 8 6 14 14 C 1.46901 * 110.99860 * 295.92161 * 4 3 2 15 15 C 1.52999 * 109.47038 * 163.54667 * 14 4 3 16 16 H 1.09002 * 110.35819 * 309.35913 * 15 14 4 17 17 C 1.54941 * 110.40340 * 187.02986 * 15 14 4 18 18 C 1.55055 * 101.20069 * 203.28601 * 17 15 14 19 19 H 1.08995 * 113.23038 * 155.68387 * 18 17 15 20 20 C 1.53989 * 108.68723 * 282.35182 * 18 17 15 21 21 O 1.43857 * 107.06607 * 102.85236 * 20 18 17 22 22 C 1.44410 * 106.48873 * 29.82993 * 21 20 18 23 23 C 1.54914 * 103.57404 * 318.47294 * 22 21 20 24 24 H 1.09001 * 112.43762 * 156.81553 * 23 22 21 25 25 O 1.43144 * 108.85808 * 282.48671 * 23 22 21 26 26 H 1.08001 * 120.00133 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99746 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99746 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46890 * 245.39116 * 3 2 1 30 30 H 1.09003 * 109.46985 * 5.38909 * 3 2 1 31 31 H 1.09004 * 109.47412 * 55.03492 * 5 4 3 32 32 H 1.09007 * 109.47326 * 175.03404 * 5 4 3 33 33 H 0.96998 * 120.00791 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.46867 * 283.54050 * 14 4 3 35 35 H 1.08999 * 109.47481 * 43.54581 * 14 4 3 36 36 H 1.09000 * 111.07813 * 321.26711 * 17 15 14 37 37 H 1.09004 * 111.07567 * 85.26766 * 17 15 14 38 38 H 1.09004 * 109.91310 * 222.20587 * 20 18 17 39 39 H 1.08997 * 109.91642 * 343.29860 * 20 18 17 40 40 H 1.09002 * 110.60714 * 76.99437 * 22 21 20 41 41 H 1.09004 * 110.60381 * 199.79621 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0031 1.3281 1.1291 5 6 3.8881 2.4981 1.0536 6 6 4.7632 2.3880 -0.1683 7 1 4.6713 1.5341 -0.8232 8 6 5.6818 3.3770 -0.4498 9 7 5.7940 4.4166 0.3479 10 14 6.7659 3.2409 -1.9648 11 1 6.4458 1.9861 -2.6916 12 1 6.5219 4.4046 -2.8544 13 1 8.1926 3.2236 -1.5527 14 6 2.2865 1.2917 2.4110 15 6 3.2588 0.9072 3.5279 16 1 3.8120 0.0081 3.2563 17 6 2.4946 0.6900 4.8582 18 6 3.6224 0.9269 5.8956 19 1 3.2502 1.2359 6.8723 20 6 4.5099 -0.3301 5.9553 21 8 5.7099 -0.0351 5.2186 22 6 5.9306 1.3863 5.3470 23 6 4.5128 1.9901 5.1888 24 1 4.4271 2.9761 5.6457 25 8 4.1624 1.9909 3.8009 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 2.6158 1.4057 -0.9343 30 1 1.3592 2.1313 0.0965 31 1 3.2869 3.4050 0.9895 32 1 4.5133 2.5389 1.9457 33 1 6.4400 5.1125 0.1497 34 1 1.8645 2.2749 2.6192 35 1 1.4843 0.5557 2.3581 36 1 1.6949 1.4214 4.9748 37 1 2.1063 -0.3263 4.9258 38 1 4.7576 -0.5608 6.9914 39 1 3.9900 -1.1736 5.5013 40 1 6.3413 1.6237 6.3283 41 1 6.5927 1.7444 4.5586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930541189.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:39 Heat of formation + Delta-G solvation = -79.301696 kcal Electronic energy + Delta-G solvation = -21551.542045 eV Core-core repulsion = 18431.399586 eV Total energy + Delta-G solvation = -3120.142459 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.75422 -38.97186 -37.50496 -34.99913 -34.00467 -33.50398 -31.60535 -29.57993 -28.60514 -27.06157 -25.44965 -23.91849 -22.48157 -21.68660 -21.53564 -20.54887 -18.54814 -18.20421 -17.27408 -16.79927 -16.72242 -16.42436 -16.14352 -15.72920 -15.11031 -15.08280 -14.71594 -14.63111 -14.15058 -14.01063 -13.52860 -13.28912 -12.87655 -12.76891 -12.68833 -12.58158 -12.43470 -12.28880 -12.04374 -11.96491 -11.90798 -11.79350 -11.50151 -11.14421 -10.85223 -10.57875 -10.16886 -10.15654 -8.99913 -8.15632 -6.24388 1.37666 1.39100 1.42832 1.52395 2.41119 2.81079 3.01597 3.15505 3.29420 3.36935 3.76781 3.92501 4.01822 4.07385 4.22966 4.23131 4.27913 4.34940 4.45595 4.56026 4.61927 4.66456 4.75708 4.80691 4.83337 4.86811 4.92908 4.94637 5.05384 5.10444 5.23708 5.31562 5.57294 5.67244 5.75420 5.91203 5.93116 6.14309 6.27412 6.47192 6.72263 6.93341 7.43161 8.95455 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.007299 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.488968 B = 3834.982483 C = 5346.275147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.147 4.147 3 C 0.085 3.915 4 N -0.539 5.539 5 C 0.206 3.794 6 C -0.523 4.523 7 H 0.057 0.943 8 C 0.001 3.999 9 N -0.931 5.931 10 Si 0.965 3.035 11 H -0.265 1.265 12 H -0.277 1.277 13 H -0.279 1.279 14 C 0.061 3.939 15 C 0.088 3.912 16 H 0.055 0.945 17 C -0.132 4.132 18 C -0.140 4.140 19 H 0.143 0.857 20 C 0.044 3.956 21 O -0.402 6.402 22 C 0.030 3.970 23 C 0.032 3.968 24 H 0.117 0.883 25 O -0.384 6.384 26 H 0.124 0.876 27 H 0.093 0.907 28 H 0.114 0.886 29 H 0.065 0.935 30 H 0.016 0.984 31 H -0.056 1.056 32 H 0.044 0.956 33 H 0.262 0.738 34 H 0.015 0.985 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.951 -9.118 12.458 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.165 4.165 3 C -0.043 4.043 4 N -0.263 5.263 5 C 0.080 3.920 6 C -0.562 4.562 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.571 5.571 10 Si 0.790 3.210 11 H -0.189 1.189 12 H -0.202 1.202 13 H -0.205 1.205 14 C -0.067 4.067 15 C 0.031 3.969 16 H 0.073 0.927 17 C -0.170 4.170 18 C -0.158 4.158 19 H 0.161 0.839 20 C -0.032 4.032 21 O -0.322 6.322 22 C -0.047 4.047 23 C -0.026 4.026 24 H 0.134 0.866 25 O -0.304 6.304 26 H 0.142 0.858 27 H 0.112 0.888 28 H 0.132 0.868 29 H 0.083 0.917 30 H 0.035 0.965 31 H -0.039 1.039 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.353 -9.394 12.169 17.495 hybrid contribution 0.334 1.308 -0.719 1.530 sum -8.018 -8.086 11.449 16.148 Atomic orbital electron populations 1.23974 0.94863 1.02730 1.00392 1.22873 0.96065 0.97485 1.00108 1.21123 0.93225 0.94648 0.95274 1.62084 1.19439 1.43349 1.01405 1.19572 0.90622 0.84210 0.97577 1.21557 1.19500 1.05811 1.09324 0.92487 1.25876 0.98752 0.94938 1.00122 1.70125 1.36853 1.10867 1.39288 0.85406 0.78330 0.78265 0.79042 1.18902 1.20218 1.20473 1.22256 0.95536 0.99508 0.89386 1.23047 0.89549 0.89347 0.94989 0.92697 1.23319 0.97561 1.04560 0.91566 1.24033 0.95731 0.94848 1.01196 0.83950 1.23482 0.84930 0.97351 0.97442 1.88952 1.44505 1.24159 1.74570 1.24055 0.97639 0.80860 1.02125 1.24469 0.94472 1.00385 0.83275 0.86561 1.88710 1.65794 1.51311 1.24595 0.85794 0.88823 0.86849 0.91719 0.96540 1.03851 0.93788 0.92964 0.96654 0.87966 0.89393 0.87222 0.89809 0.88912 0.88674 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.45 14.31 67.78 0.97 -3.48 16 2 C -0.15 -4.59 8.33 25.64 0.21 -4.37 16 3 C 0.08 3.51 5.25 85.56 0.45 3.96 16 4 N -0.54 -25.00 4.46 -905.35 -4.04 -29.04 16 5 C 0.21 11.86 4.49 85.56 0.38 12.24 16 6 C -0.52 -31.79 8.39 25.60 0.21 -31.57 16 7 H 0.06 3.42 7.08 -2.91 -0.02 3.39 16 8 C 0.00 0.05 5.46 84.65 0.46 0.51 16 9 N -0.93 -59.02 13.29 21.45 0.28 -58.74 16 10 Si 0.96 46.86 29.54 68.60 2.03 48.88 16 11 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 14 C 0.06 2.31 4.69 86.30 0.41 2.71 16 15 C 0.09 3.09 3.04 31.26 0.09 3.19 16 16 H 0.06 2.16 8.03 -2.39 -0.02 2.14 16 17 C -0.13 -2.98 5.90 31.96 0.19 -2.79 16 18 C -0.14 -2.90 4.31 -8.84 -0.04 -2.94 16 19 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 20 C 0.04 0.97 6.79 72.32 0.49 1.46 16 21 O -0.40 -13.00 11.38 -148.06 -1.68 -14.68 16 22 C 0.03 0.91 7.33 72.64 0.53 1.44 16 23 C 0.03 0.95 4.73 32.16 0.15 1.10 16 24 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 25 O -0.38 -16.01 7.91 -148.06 -1.17 -17.18 16 26 H 0.12 2.30 8.06 -2.91 -0.02 2.27 16 27 H 0.09 2.26 7.84 -2.91 -0.02 2.24 16 28 H 0.11 3.44 8.06 -2.91 -0.02 3.42 16 29 H 0.06 3.00 6.60 -2.39 -0.02 2.99 16 30 H 0.02 0.68 7.79 -2.39 -0.02 0.67 16 31 H -0.06 -3.57 8.13 -2.39 -0.02 -3.59 16 32 H 0.04 2.75 5.19 -2.38 -0.01 2.74 16 33 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.02 0.61 8.05 -2.39 -0.02 0.60 16 35 H 0.10 3.17 6.79 -2.39 -0.02 3.15 16 36 H 0.09 1.83 8.07 -2.39 -0.02 1.81 16 37 H 0.11 1.88 7.70 -2.39 -0.02 1.86 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.09 1.88 7.41 -2.39 -0.02 1.87 16 40 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -75.37 324.74 0.92 -74.45 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.99 Total: 14.85 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 4.52 Total: -18.54 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -3.76 Total: -87.78 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -2.86 Total: -31.87 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -75.37 0.92 -74.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930541189.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.853 kcal (2) G-P(sol) polarization free energy of solvation -75.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds