Wall clock time and date at job start Mon Mar 30 2020 05:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34221 * 116.99958 * 2 1 4 4 O 1.20827 * 120.00210 * 359.97438 * 3 2 1 5 5 C 1.50708 * 120.00229 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.41174 * 2.39269 * 5 3 2 7 7 C 1.50348 * 110.36583 * 240.09106 * 5 3 2 8 8 H 1.08994 * 109.68809 * 322.08248 * 7 5 3 9 9 C 1.51004 * 125.52372 * 96.73389 * 7 5 3 10 10 C 1.56402 * 101.60241 * 156.09689 * 9 7 5 11 11 C 1.55939 * 105.79430 * 334.99312 * 10 9 7 12 12 C 1.50322 * 104.16202 * 352.48014 * 11 10 9 13 13 H 1.09000 * 110.00227 * 279.46123 * 12 11 10 14 14 C 1.50931 * 125.65515 * 145.16130 * 12 11 10 15 15 N 1.49626 * 110.36581 * 124.68565 * 5 3 2 16 16 C 1.46902 * 111.00050 * 4.18028 * 15 5 3 17 17 C 1.53002 * 109.46969 * 177.69980 * 16 15 5 18 18 C 1.50699 * 109.47249 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99864 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00029 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00024 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00072 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47113 * 89.99560 * 22 20 18 24 24 H 1.48497 * 109.47437 * 209.99738 * 22 20 18 25 25 H 1.48501 * 109.47050 * 329.99728 * 22 20 18 26 26 H 1.09001 * 109.46732 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46542 * 299.99933 * 1 2 3 28 28 H 1.08997 * 109.46975 * 60.00287 * 1 2 3 29 29 H 1.08997 * 110.99800 * 274.17513 * 9 7 5 30 30 H 1.08994 * 111.00547 * 38.01886 * 9 7 5 31 31 H 1.09001 * 110.17972 * 94.07118 * 10 9 7 32 32 H 1.08988 * 110.18455 * 215.90939 * 10 9 7 33 33 H 1.08995 * 110.49305 * 233.81305 * 11 10 9 34 34 H 1.09002 * 110.49432 * 111.14974 * 11 10 9 35 35 H 1.08998 * 110.84996 * 322.22997 * 14 12 11 36 36 H 1.08997 * 110.85018 * 85.86697 * 14 12 11 37 37 H 1.08998 * 109.47394 * 297.70018 * 16 15 5 38 38 H 1.09001 * 109.47239 * 57.70194 * 16 15 5 39 39 H 1.08998 * 109.47093 * 300.00223 * 17 16 15 40 40 H 1.09001 * 109.46965 * 60.00046 * 17 16 15 41 41 H 0.97001 * 120.00727 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9996 0.2755 -0.0417 7 6 4.0516 2.0044 1.2224 8 1 3.3763 2.8290 1.4501 9 6 4.5262 1.3558 2.5008 10 6 5.4458 2.4716 3.0971 11 6 5.9203 3.3251 1.8814 12 6 5.4254 2.5649 0.6827 13 1 6.1013 1.7395 0.4595 14 6 4.9350 3.1775 -0.6066 15 7 4.0451 2.0991 -1.1528 16 6 2.9146 2.6744 -1.8938 17 6 3.4433 3.5547 -3.0280 18 6 2.2837 4.1445 -3.7885 19 1 1.2708 3.9148 -3.4922 20 6 2.5157 4.9781 -4.8619 21 7 1.5037 5.4924 -5.5259 22 14 4.2675 5.3760 -5.3740 23 1 4.7319 4.3756 -6.3683 24 1 4.3109 6.7317 -5.9784 25 1 5.1526 5.3369 -4.1821 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.6887 1.1434 3.1653 30 1 5.0961 0.4506 2.2915 31 1 4.8815 3.0911 3.7942 32 1 6.3029 2.0238 3.5997 33 1 7.0079 3.3957 1.8660 34 1 5.4729 4.3186 1.9146 35 1 4.3674 4.0876 -0.4125 36 1 5.7664 3.3742 -1.2835 37 1 2.3067 1.8713 -2.3103 38 1 2.3070 3.2774 -1.2189 39 1 4.0513 4.3578 -2.6114 40 1 4.0509 2.9517 -3.7028 41 1 1.6669 6.0786 -6.2814 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191197275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:28 Heat of formation + Delta-G solvation = -66.301113 kcal Electronic energy + Delta-G solvation = -21562.445565 eV Core-core repulsion = 18442.866853 eV Total energy + Delta-G solvation = -3119.578712 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.29061 -39.44888 -36.63665 -35.52950 -33.08025 -31.20595 -30.58594 -28.05582 -27.96070 -26.37359 -24.28962 -22.58267 -21.25374 -20.24004 -20.02844 -19.51151 -17.45292 -16.84256 -16.47499 -16.22589 -15.55520 -15.01572 -14.76278 -14.17207 -14.11789 -13.83528 -13.49337 -13.08577 -12.91106 -12.48271 -12.32978 -12.04288 -11.93571 -11.73396 -11.38658 -11.29719 -11.12748 -10.91266 -10.76959 -10.63674 -10.49108 -10.45210 -10.22278 -9.84228 -9.75125 -9.66979 -9.15583 -8.50309 -7.96702 -6.00317 -3.98163 2.30912 2.82007 3.34443 3.40915 3.45254 3.87500 4.12167 4.48909 4.59823 4.69462 4.88115 4.98234 5.15219 5.17766 5.22094 5.27725 5.32299 5.33808 5.48382 5.55860 5.57193 5.62194 5.67589 5.84897 5.88276 5.94952 5.97664 6.03722 6.20589 6.24477 6.33624 6.37787 6.52624 6.86266 7.00450 7.07693 7.40652 7.55642 7.85196 7.92151 8.58390 9.04765 9.61664 11.13244 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.006487 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.431250 B = 4315.590422 C = 5610.885847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.450 3.550 4 O -0.490 6.490 5 C 0.093 3.907 6 H 0.112 0.888 7 C -0.129 4.129 8 H 0.086 0.914 9 C -0.103 4.103 10 C -0.120 4.120 11 C -0.106 4.106 12 C -0.111 4.111 13 H 0.085 0.915 14 C 0.054 3.946 15 N -0.498 5.498 16 C 0.038 3.962 17 C -0.006 4.006 18 C -0.518 4.518 19 H 0.070 0.930 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.881 3.119 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.265 1.265 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.017 0.983 40 H 0.018 0.982 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.928 -10.156 17.366 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.292 3.708 4 O -0.376 6.376 5 C -0.015 4.015 6 H 0.130 0.870 7 C -0.148 4.148 8 H 0.104 0.896 9 C -0.141 4.141 10 C -0.158 4.158 11 C -0.144 4.144 12 C -0.130 4.130 13 H 0.103 0.897 14 C -0.073 4.073 15 N -0.224 5.224 16 C -0.089 4.089 17 C -0.044 4.044 18 C -0.556 4.556 19 H 0.088 0.912 20 C -0.134 4.134 21 N -0.543 5.543 22 Si 0.709 3.291 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.117 0.883 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.891 -10.061 16.833 20.786 hybrid contribution -0.039 0.807 -0.038 0.808 sum 6.852 -9.255 16.795 20.363 Atomic orbital electron populations 1.23242 0.76673 1.03352 1.02706 1.86504 1.23231 1.33767 1.84181 1.24153 0.92245 0.81431 0.72979 1.90670 1.67207 1.35807 1.43888 1.21596 0.85785 1.01284 0.92867 0.87033 1.22447 0.98439 0.99811 0.94119 0.89604 1.21781 0.99011 0.98114 0.95204 1.22939 0.98872 0.96531 0.97439 1.21487 1.00681 0.98921 0.93325 1.22178 0.96062 1.00129 0.94592 0.89697 1.22453 0.96907 0.93613 0.94304 1.65966 1.18200 1.21488 1.16781 1.22935 0.91110 0.98343 0.96495 1.19574 0.97270 0.94242 0.93277 1.21057 0.93525 1.28026 1.13010 0.91152 1.24990 0.96951 0.95445 0.95984 1.69916 1.30605 1.33020 1.20795 0.86752 0.85664 0.77570 0.79160 1.20238 1.21470 1.18973 0.88347 0.92181 0.91563 0.91592 0.90812 0.91619 0.91503 0.91287 0.91346 0.92262 0.89360 0.92042 0.91224 0.96471 0.96372 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.39 10.57 -39.23 -0.41 -5.80 16 3 C 0.45 7.59 5.54 36.01 0.20 7.79 16 4 O -0.49 -9.74 13.14 -18.75 -0.25 -9.99 16 5 C 0.09 1.40 3.70 -68.66 -0.25 1.15 16 6 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 7 C -0.13 -1.64 2.18 -90.27 -0.20 -1.84 16 8 H 0.09 1.28 7.62 -51.93 -0.40 0.88 16 9 C -0.10 -0.99 6.72 -25.91 -0.17 -1.17 16 10 C -0.12 -1.04 6.95 -23.33 -0.16 -1.21 16 11 C -0.11 -1.06 6.69 -26.50 -0.18 -1.23 16 12 C -0.11 -1.35 2.81 -90.32 -0.25 -1.60 16 13 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 14 C 0.05 0.86 5.18 -3.06 -0.02 0.85 16 15 N -0.50 -8.95 5.37 -225.79 -1.21 -10.16 16 16 C 0.04 0.83 3.50 -3.82 -0.01 0.82 16 17 C -0.01 -0.15 3.91 -27.88 -0.11 -0.26 16 18 C -0.52 -15.47 9.66 -34.44 -0.33 -15.81 16 19 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 20 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 21 N -0.90 -28.68 13.96 55.43 0.77 -27.91 16 22 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 26 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 28 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.49 8.14 -51.94 -0.42 0.07 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.03 7.68 -51.93 -0.40 0.63 16 36 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.06 1.43 7.44 -51.93 -0.39 1.04 16 38 H 0.07 1.66 5.64 -51.93 -0.29 1.37 16 39 H 0.02 0.43 6.05 -51.93 -0.31 0.11 16 40 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 41 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 LS Contribution 320.11 15.07 4.82 4.82 Total: -1.00 -33.31 320.11 -8.31 -41.62 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.84 Total: -1.16 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.52 Total: -9.10 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.44 Total: -38.07 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.66 Total: -15.79 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.31 -8.31 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191197275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.682 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds